Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:09:56 (23470): wrapper (7.7.26015): starting
11:09:56 (23470): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 11:09:56] Arguments: --nthreads 8
[2025-11-26 11:09:56] Threads: 8
[2025-11-26 11:09:56] Checking for CVMFS
[2025-11-26 11:09:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 11:09:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 11:09:58] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 11:09:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 11:09:59] 2.11.2.0 22385 285251 146916 153316 2 311 13349974 25165824 2372 130560 9 156854757 99.885 81685467 3037 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-26 11:09:59] CVMFS is ok
[2025-11-26 11:09:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 11:09:59] Checking for apptainer binary...
[2025-11-26 11:09:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 11:09:59] Running /usr/bin/apptainer --version
[2025-11-26 11:09:59] apptainer version 1.3.2-1.el7
[2025-11-26 11:09:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 11:10:09] cg-vwn497.simple-grid.lan
[2025-11-26 11:10:09] apptainer works
[2025-11-26 11:10:09] Set ATHENA_PROC_NUMBER=8
[2025-11-26 11:10:09] Set ATHENA_CORE_NUMBER=8
[2025-11-26 11:10:10] Starting ATLAS job with PandaID=6895344012
[2025-11-26 11:10:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 08:38:46]  *** The last 200 lines of the pilot log: ***
[2025-11-27 08:38:46] 2025-11-27 07:37:38,280 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 08:38:46] 2025-11-27 07:37:38,281 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2025-11-27 08:38:46] 2025-11-27 07:37:38,283 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-6895344012/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 08:38:46] 2025-11-27 07:37:38,283 | INFO     | extracted standard info from prmon json
[2025-11-27 08:38:46] 2025-11-27 07:37:38,283 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 08:38:46] 2025-11-27 07:37:38,283 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 08:38:46] 2025-11-27 07:37:38,311 | INFO     | fitting pss+swap vs Time
[2025-11-27 08:38:46] 2025-11-27 07:37:38,313 | INFO     | sum of square deviations: 623238716330.647
[2025-11-27 08:38:46] 2025-11-27 07:37:38,389 | INFO     | sum of deviations: 2361605326402.402
[2025-11-27 08:38:46] 2025-11-27 07:37:38,389 | INFO     | mean x: 1764190453.5736926
[2025-11-27 08:38:46] 2025-11-27 07:37:38,389 | INFO     | mean y: 2863863.7591125197
[2025-11-27 08:38:46] 2025-11-27 07:37:38,389 | INFO     | intersect: -6682089209.24212
[2025-11-27 08:38:46] 2025-11-27 07:37:38,391 | INFO     | chi2: 10.219866071610857
[2025-11-27 08:38:46] 2025-11-27 07:37:38,392 | INFO     | sum of square deviations: 615860656372.3602
[2025-11-27 08:38:46] 2025-11-27 07:37:38,461 | INFO     | sum of deviations: 2801660557044.317
[2025-11-27 08:38:46] 2025-11-27 07:37:38,462 | INFO     | mean x: 1764190301.0779634
[2025-11-27 08:38:46] 2025-11-27 07:37:38,462 | INFO     | mean y: 2872959.2211614954
[2025-11-27 08:38:46] 2025-11-27 07:37:38,462 | INFO     | intersect: -8022745060.875006
[2025-11-27 08:38:46] 2025-11-27 07:37:38,463 | INFO     | chi2: 6.7700622504444485
[2025-11-27 08:38:46] 2025-11-27 07:37:38,463 | INFO     | current chi2=6.7700622504444485 (change=33.75586134880386 %)
[2025-11-27 08:38:46] 2025-11-27 07:37:38,465 | INFO     | sum of square deviations: 608541062626.5269
[2025-11-27 08:38:46] 2025-11-27 07:37:38,536 | INFO     | sum of deviations: 3263232030416.2666
[2025-11-27 08:38:46] 2025-11-27 07:37:38,536 | INFO     | mean x: 1764190148.5822685
[2025-11-27 08:38:46] 2025-11-27 07:37:38,536 | INFO     | mean y: 2882576.822683706
[2025-11-27 08:38:46] 2025-11-27 07:37:38,536 | INFO     | intersect: -9457385849.02658
[2025-11-27 08:38:46] 2025-11-27 07:37:38,538 | INFO     | chi2: 3.1112696243495823
[2025-11-27 08:38:46] 2025-11-27 07:37:38,538 | INFO     | current chi2=3.1112696243495823 (change=54.04370729168214 %)
[2025-11-27 08:38:46] 2025-11-27 07:37:38,539 | INFO     | sum of square deviations: 601279397655.3267
[2025-11-27 08:38:46] 2025-11-27 07:37:38,610 | INFO     | sum of deviations: 3323424397128.493
[2025-11-27 08:38:46] 2025-11-27 07:37:38,611 | INFO     | mean x: 1764189996.0834002
[2025-11-27 08:38:46] 2025-11-27 07:37:38,611 | INFO     | mean y: 2883838.033680834
[2025-11-27 08:38:46] 2025-11-27 07:37:38,611 | INFO     | intersect: -9748243669.439222
[2025-11-27 08:38:46] 2025-11-27 07:37:38,612 | INFO     | chi2: 2.9145399900656135
[2025-11-27 08:38:46] 2025-11-27 07:37:38,612 | INFO     | current chi2=2.9145399900656135 (change=6.323130362740439 %)
[2025-11-27 08:38:46] 2025-11-27 07:37:38,612 | INFO     | right removable region: 1246
[2025-11-27 08:38:46] 2025-11-27 07:37:38,614 | INFO     | sum of square deviations: 615859906561.5155
[2025-11-27 08:38:46] 2025-11-27 07:37:38,660 | INFO     | sum of deviations: 1998598636062.8623
[2025-11-27 08:38:46] 2025-11-27 07:37:38,660 | INFO     | mean x: 1764190606.0771677
[2025-11-27 08:38:46] 2025-11-27 07:37:38,660 | INFO     | mean y: 2871359.2283214
[2025-11-27 08:38:46] 2025-11-27 07:37:38,661 | INFO     | intersect: -5722308834.343112
[2025-11-27 08:38:46] 2025-11-27 07:37:38,662 | INFO     | chi2: 7.774509577985838
[2025-11-27 08:38:46] 2025-11-27 07:37:38,662 | INFO     | current chi2=7.774509577985838 (change=23.92748081521172 %)
[2025-11-27 08:38:46] 2025-11-27 07:37:38,662 | INFO     | left removable region: 10
[2025-11-27 08:38:46] 2025-11-27 07:37:38,664 | INFO     | sum of square deviations: 585507045743.7368
[2025-11-27 08:38:46] 2025-11-27 07:37:38,709 | INFO     | sum of deviations: 2847150884088.039
[2025-11-27 08:38:46] 2025-11-27 07:37:38,709 | INFO     | mean x: 1764190270.5865695
[2025-11-27 08:38:46] 2025-11-27 07:37:38,709 | INFO     | mean y: 2893719.3033980583
[2025-11-27 08:38:46] 2025-11-27 07:37:38,709 | INFO     | intersect: -8575851703.340901
[2025-11-27 08:38:46] 2025-11-27 07:37:38,711 | INFO     | chi2: 0.3222036502252537
[2025-11-27 08:38:46] 2025-11-27 07:37:38,711 | INFO     | current memory leak: 4.86 B/s (using 1236 data points, chi2=0.32)
[2025-11-27 08:38:46] 2025-11-27 07:37:38,712 | INFO     | could have reported an average CPU frequency of 2249 MHz (43 samples)
[2025-11-27 08:38:46] 2025-11-27 07:37:38,712 | INFO     | ..............................
[2025-11-27 08:38:46] 2025-11-27 07:37:38,712 | INFO     | . Timing measurements:
[2025-11-27 08:38:46] 2025-11-27 07:37:38,712 | INFO     | . get job = 0 s
[2025-11-27 08:38:46] 2025-11-27 07:37:38,712 | INFO     | . initial setup = 2 s
[2025-11-27 08:38:46] 2025-11-27 07:37:38,712 | INFO     | . payload setup = 13 s
[2025-11-27 08:38:46] 2025-11-27 07:37:38,712 | INFO     | . stage-in = 0 s
[2025-11-27 08:38:46] 2025-11-27 07:37:38,712 | INFO     | . payload execution = 76975 s
[2025-11-27 08:38:46] 2025-11-27 07:37:38,713 | INFO     | . stage-out = 5 s
[2025-11-27 08:38:46] 2025-11-27 07:37:38,713 | INFO     | . log creation = 2 s
[2025-11-27 08:38:46] 2025-11-27 07:37:38,713 | INFO     | ..............................
[2025-11-27 08:38:46] 2025-11-27 07:37:38,816 | INFO     | 
[2025-11-27 08:38:46] 2025-11-27 07:37:38,816 | INFO     | job summary report
[2025-11-27 08:38:46] 2025-11-27 07:37:38,816 | INFO     | --------------------------------------------------
[2025-11-27 08:38:46] 2025-11-27 07:37:38,816 | INFO     | PanDA job id: 6895344012
[2025-11-27 08:38:46] 2025-11-27 07:37:38,816 | INFO     | task id: 47556137
[2025-11-27 08:38:46] 2025-11-27 07:37:38,816 | INFO     | errors: (none)
[2025-11-27 08:38:46] 2025-11-27 07:37:38,816 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 08:38:46] 2025-11-27 07:37:38,817 | INFO     | pilot state: finished 
[2025-11-27 08:38:46] 2025-11-27 07:37:38,817 | INFO     | transexitcode: 0
[2025-11-27 08:38:46] 2025-11-27 07:37:38,817 | INFO     | exeerrorcode: 0
[2025-11-27 08:38:46] 2025-11-27 07:37:38,817 | INFO     | exeerrordiag: 
[2025-11-27 08:38:46] 2025-11-27 07:37:38,817 | INFO     | exitcode: 0
[2025-11-27 08:38:46] 2025-11-27 07:37:38,817 | INFO     | exitmsg: OK
[2025-11-27 08:38:46] 2025-11-27 07:37:38,817 | INFO     | cpuconsumptiontime: 286654 s
[2025-11-27 08:38:46] 2025-11-27 07:37:38,817 | INFO     | nevents: 1000
[2025-11-27 08:38:46] 2025-11-27 07:37:38,817 | INFO     | neventsw: 0
[2025-11-27 08:38:46] 2025-11-27 07:37:38,817 | INFO     | pid: 1475
[2025-11-27 08:38:46] 2025-11-27 07:37:38,817 | INFO     | pgrp: 1475
[2025-11-27 08:38:46] 2025-11-27 07:37:38,817 | INFO     | corecount: 8
[2025-11-27 08:38:46] 2025-11-27 07:37:38,817 | INFO     | event service: False
[2025-11-27 08:38:46] 2025-11-27 07:37:38,818 | INFO     | sizes: {0: 2284043, 1: 2284242, 9: 2284504, 12: 2284532, 76993: 2342817, 76994: 2342816, 77000: 2352052, 77098: 2352242}
[2025-11-27 08:38:46] 2025-11-27 07:37:38,818 | INFO     | --------------------------------------------------
[2025-11-27 08:38:46] 2025-11-27 07:37:38,818 | INFO     | 
[2025-11-27 08:38:46] 2025-11-27 07:37:38,818 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-11-27 08:38:46] 2025-11-27 07:37:39,457 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 08:38:46] 2025-11-27 07:37:39,458 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 08:38:46] 2025-11-27 07:37:39,458 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 08:38:46] 2025-11-27 07:37:39,458 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 08:38:46] 2025-11-27 07:37:39,458 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 08:38:46] 2025-11-27 07:37:39,458 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 08:38:46] 2025-11-27 07:37:39,458 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 08:38:46] 2025-11-27 07:37:39,458 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 08:38:46] 2025-11-27 07:37:39,458 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 08:38:46] 2025-11-27 07:37:39,458 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 08:38:46] 2025-11-27 07:37:39,458 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 08:38:46] 2025-11-27 07:37:39,458 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 08:38:46] 2025-11-27 07:37:39,458 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 08:38:46] 2025-11-27 07:37:39,458 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 08:38:46] 2025-11-27 07:37:39,459 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 08:38:46] 2025-11-27 07:37:39,459 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 08:38:46] 2025-11-27 07:37:39,459 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 08:38:46] 2025-11-27 07:37:39,459 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 08:38:46] 2025-11-27 07:37:39,459 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 08:38:46] 2025-11-27 07:37:39,459 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 08:38:46] 2025-11-27 07:37:39,459 | INFO     | job 6895344012 has completed (purged errors)
[2025-11-27 08:38:46] 2025-11-27 07:37:39,459 | INFO     | overall cleanup function is called
[2025-11-27 08:38:46] 2025-11-27 07:37:40,473 | INFO     | --- collectZombieJob: --- 10, [1475]
[2025-11-27 08:38:46] 2025-11-27 07:37:40,473 | INFO     | zombie collector waiting for pid 1475
[2025-11-27 08:38:46] 2025-11-27 07:37:40,473 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 08:38:46] 2025-11-27 07:37:40,473 | INFO     | collected zombie processes
[2025-11-27 08:38:46] 2025-11-27 07:37:40,473 | INFO     | will attempt to kill all subprocesses of pid=1475
[2025-11-27 08:38:46] 2025-11-27 07:37:40,583 | INFO     | process IDs to be killed: [1475] (in reverse order)
[2025-11-27 08:38:46] 2025-11-27 07:37:40,750 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 08:38:46] 2025-11-27 07:37:40,751 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 08:38:46] 2025-11-27 07:37:40,753 | INFO     | did not find any defunct processes belonging to 1475
[2025-11-27 08:38:46] 2025-11-27 07:37:40,755 | INFO     | did not find any defunct processes belonging to 1475
[2025-11-27 08:38:46] 2025-11-27 07:37:40,769 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 08:38:46] 2025-11-27 07:37:40,769 | INFO     | ready for new job
[2025-11-27 08:38:46] 2025-11-27 07:37:40,770 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 08:38:46] 2025-11-27 07:37:40,774 | INFO     | ***************************************
[2025-11-27 08:38:46] 2025-11-27 07:37:40,774 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 08:38:46] 2025-11-27 07:37:40,774 | INFO     | ***************************************
[2025-11-27 08:38:46] 2025-11-27 07:37:40,774 | INFO     | 
[2025-11-27 08:38:46] 2025-11-27 07:37:40,775 | INFO     | pilot is running in a VM
[2025-11-27 08:38:46] 2025-11-27 07:37:40,775 | INFO     | architecture information:
[2025-11-27 08:38:46] 2025-11-27 07:37:40,784 | INFO     | executing command: cat /etc/os-release
[2025-11-27 08:38:46] 2025-11-27 07:37:40,986 | INFO     | cat /etc/os-release:
[2025-11-27 08:38:46] NAME="CentOS Linux"
[2025-11-27 08:38:46] VERSION="7 (Core)"
[2025-11-27 08:38:46] ID="centos"
[2025-11-27 08:38:46] ID_LIKE="rhel fedora"
[2025-11-27 08:38:46] VERSION_ID="7"
[2025-11-27 08:38:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 08:38:46] ANSI_COLOR="0;31"
[2025-11-27 08:38:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 08:38:46] HOME_URL="https://www.centos.org/"
[2025-11-27 08:38:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 08:38:46] 
[2025-11-27 08:38:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 08:38:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 08:38:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 08:38:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 08:38:46] 
[2025-11-27 08:38:46] 2025-11-27 07:37:40,987 | INFO     | ***************************************
[2025-11-27 08:38:46] 2025-11-27 07:37:41,490 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-11-27 08:38:46] 2025-11-27 07:37:41,708 | INFO     | sufficient remaining disk space (496162045952 B)
[2025-11-27 08:38:46] 2025-11-27 07:37:41,708 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 08:38:46] 2025-11-27 07:37:41,708 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 08:38:46] 2025-11-27 07:37:41,708 | INFO     | update_server=False
[2025-11-27 08:38:46] 2025-11-27 07:37:41,708 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 08:38:46] 2025-11-27 07:37:41,709 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 08:38:46] 2025-11-27 07:37:41,719 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 08:38:46] 2025-11-27 07:37:41,724 | INFO     | all job control threads have been joined
[2025-11-27 08:38:46] 2025-11-27 07:37:41,793 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 08:38:46] 2025-11-27 07:37:41,793 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 08:38:46] 2025-11-27 07:37:41,793 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 08:38:46] 2025-11-27 07:37:41,794 | INFO     | will abort loop
[2025-11-27 08:38:46] 2025-11-27 07:37:42,433 | INFO     | all data control threads have been joined
[2025-11-27 08:38:46] 2025-11-27 07:37:42,714 | INFO     | [job] retrieve thread has finished
[2025-11-27 08:38:46] 2025-11-27 07:37:42,730 | INFO     | [job] control thread has finished
[2025-11-27 08:38:46] 2025-11-27 07:37:42,736 | INFO     | [job] validate thread has finished
[2025-11-27 08:38:46] 2025-11-27 07:37:42,799 | INFO     | [job] job monitor thread has finished
[2025-11-27 08:38:46] 2025-11-27 07:37:42,842 | INFO     | [payload] failed_post thread has finished
[2025-11-27 08:38:46] 2025-11-27 07:37:42,844 | INFO     | [payload] validate_post thread has finished
[2025-11-27 08:38:46] 2025-11-27 07:37:42,967 | INFO     | all payload control threads have been joined
[2025-11-27 08:38:46] 2025-11-27 07:37:43,439 | INFO     | [data] control thread has finished
[2025-11-27 08:38:46] 2025-11-27 07:37:43,467 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 08:38:46] 2025-11-27 07:37:43,696 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 08:38:46] 2025-11-27 07:37:43,716 | INFO     | [data] copytool_out thread has finished
[2025-11-27 08:38:46] 2025-11-27 07:37:43,830 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 08:38:46] 2025-11-27 07:37:43,843 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 08:38:46] 2025-11-27 07:37:43,930 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 08:38:46] 2025-11-27 07:37:43,973 | INFO     | [payload] control thread has finished
[2025-11-27 08:38:46] 2025-11-27 07:37:44,122 | INFO     | [data] copytool_in thread has finished
[2025-11-27 08:38:46] 2025-11-27 07:37:44,836 | INFO     | [job] queue monitor thread has finished
[2025-11-27 08:38:46] 2025-11-27 07:37:45,728 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 08:38:46] 2025-11-27 07:38:11,221 | INFO     | PID=27351 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 08:38:46] 2025-11-27 07:38:11,221 | INFO     | .. there are 9 such processes running
[2025-11-27 08:38:46] 2025-11-27 07:38:11,222 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 08:38:46] 2025-11-27 07:38:11,222 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 08:38:46] 2025-11-27 07:38:11,222 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 08:38:46] 2025-11-27 07:38:35,931 | INFO     | [monitor] cgroup control has ended
[2025-11-27 08:38:46] 2025-11-27 07:38:37,180 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139791949424448)>', '<ExcThread(monitor, started 139791496627968)>']
[2025-11-27 08:38:46] 2025-11-27 07:38:37,375 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 08:38:46] 2025-11-27 07:38:37,375 | INFO     | [monitor] control thread has ended
[2025-11-27 08:38:46] 2025-11-27 07:38:42,206 | INFO     | all workflow threads have been joined
[2025-11-27 08:38:46] 2025-11-27 07:38:42,206 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 08:38:46] 2025-11-27 07:38:42,206 | INFO     | traces error code: 0
[2025-11-27 08:38:46] 2025-11-27 07:38:42,207 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 08:38:46] 2025-11-27 07:38:42,643 [wrapper] ==== pilot stdout END ====
[2025-11-27 08:38:46] 2025-11-27 07:38:42,705 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 08:38:46] 2025-11-27 07:38:42,815 [wrapper] pilotpid: 27351
[2025-11-27 08:38:46] 2025-11-27 07:38:42,904 [wrapper] Pilot exit status: 0
[2025-11-27 08:38:46] 2025-11-27 07:38:43,270 [wrapper] pandaids: 6895344012
[2025-11-27 08:38:46] 2025-11-27 07:38:43,683 [wrapper] cleanup supervisor_pilot 19233 27352
[2025-11-27 08:38:46] 2025-11-27 07:38:43,731 [wrapper] Test setup, not cleaning
[2025-11-27 08:38:46] 2025-11-27 07:38:43,787 [wrapper] apfmon messages muted
[2025-11-27 08:38:46] 2025-11-27 07:38:43,877 [wrapper] ==== wrapper stdout END ====
[2025-11-27 08:38:46] 2025-11-27 07:38:43,985 [wrapper] ==== wrapper stderr END ====
[2025-11-27 08:38:46]  *** Error codes and diagnostics ***
[2025-11-27 08:38:46]     "exeErrorCode": 0,
[2025-11-27 08:38:46]     "exeErrorDiag": "",
[2025-11-27 08:38:46]     "pilotErrorCode": 0,
[2025-11-27 08:38:46]     "pilotErrorDiag": "",
[2025-11-27 08:38:46]  *** Listing of results directory ***
[2025-11-27 08:38:46] total 1326432
[2025-11-27 08:38:46] -rw-r--r--. 1 boinc boinc    576529 Nov 22 16:48 pilot3.tar.gz
[2025-11-27 08:38:46] -rw-r--r--. 1 boinc boinc      5112 Nov 22 17:20 queuedata.json
[2025-11-27 08:38:46] -rwx------. 1 boinc boinc     36292 Nov 22 17:20 runpilot2-wrapper.sh
[2025-11-27 08:38:46] -rw-r--r--. 1 boinc boinc       100 Nov 26 11:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 08:38:46] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 11:09 run_atlas
[2025-11-27 08:38:46] -rw-r--r--. 1 boinc boinc       105 Nov 26 11:09 job.xml
[2025-11-27 08:38:46] -rw-r--r--. 1 boinc boinc      6392 Nov 26 11:09 init_data.xml
[2025-11-27 08:38:46] -rw-r--r--. 2 boinc boinc 411816567 Nov 26 11:09 EVNT.47483658._000428.pool.root.1
[2025-11-27 08:38:46] -rw-r--r--. 2 boinc boinc     15847 Nov 26 11:09 start_atlas.sh
[2025-11-27 08:38:46] drwxrwx--x. 2 boinc boinc        68 Nov 26 11:09 shared
[2025-11-27 08:38:46] -rw-r--r--. 2 boinc boinc    590103 Nov 26 11:09 input.tar.gz
[2025-11-27 08:38:46] -rw-r--r--. 1 boinc boinc         0 Nov 26 11:09 boinc_lockfile
[2025-11-27 08:38:46] -rw-r--r--. 1 boinc boinc      2784 Nov 26 11:10 pandaJob.out
[2025-11-27 08:38:46] -rw-------. 1 boinc boinc    991827 Nov 26 11:12 agis_schedconf.cvmfs.json
[2025-11-27 08:38:46] drwx------. 5 boinc boinc      4096 Nov 26 11:12 pilot3
[2025-11-27 08:38:46] -rw-r--r--. 1 boinc boinc       533 Nov 27 08:21 boinc_task_state.xml
[2025-11-27 08:38:46] -rw-------. 1 boinc boinc 917153464 Nov 27 08:35 HITS.47556137._004239.pool.root.1
[2025-11-27 08:38:46] -rw-------. 1 boinc boinc      1032 Nov 27 08:35 memory_monitor_summary.json
[2025-11-27 08:38:46] -rw-------. 1 boinc boinc   1516240 Nov 27 08:35 agis_ddmendpoints.agis.ALL.json
[2025-11-27 08:38:46] -rw-------. 1 boinc boinc   2379574 Nov 27 08:35 log.47556137._004239.job.log.tgz.1
[2025-11-27 08:38:46] -rw-------. 1 boinc boinc        95 Nov 27 08:37 pilot_heartbeat.json
[2025-11-27 08:38:46] -rw-------. 1 boinc boinc      8624 Nov 27 08:37 heartbeat.json
[2025-11-27 08:38:46] -rw-r--r--. 1 boinc boinc        29 Nov 27 08:38 wrapper_checkpoint.txt
[2025-11-27 08:38:46] -rw-r--r--. 1 boinc boinc      8192 Nov 27 08:38 boinc_mmap_file
[2025-11-27 08:38:46] -rw-------. 1 boinc boinc      5071 Nov 27 08:38 pilotlog.txt
[2025-11-27 08:38:46] -rw-------. 1 boinc boinc  10316068 Nov 27 08:38 log.47556137._004239.job.log.1
[2025-11-27 08:38:46] -rw-------. 1 boinc boinc       353 Nov 27 08:38 output.list
[2025-11-27 08:38:46] -rw-r--r--. 1 boinc boinc       620 Nov 27 08:38 runtime_log
[2025-11-27 08:38:46] -rw-------. 1 boinc boinc  12718080 Nov 27 08:38 result.tar.gz
[2025-11-27 08:38:46] -rw-r--r--. 1 boinc boinc      8833 Nov 27 08:38 runtime_log.err
[2025-11-27 08:38:46] -rw-------. 1 boinc boinc       662 Nov 27 08:38 b4oMDmAX5g8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmbBIKDmFm8QMn.diag
[2025-11-27 08:38:46] -rw-r--r--. 1 boinc boinc     20929 Nov 27 08:38 stderr.txt
[2025-11-27 08:38:46] HITS file was successfully produced:
[2025-11-27 08:38:46] -rw-------. 1 boinc boinc 917153464 Nov 27 08:35 shared/HITS.pool.root.1
[2025-11-27 08:38:46]  *** Contents of shared directory: ***
[2025-11-27 08:38:46] total 1310844
[2025-11-27 08:38:46] -rw-r--r--. 2 boinc boinc 411816567 Nov 26 11:09 ATLAS.root_0
[2025-11-27 08:38:46] -rw-r--r--. 2 boinc boinc     15847 Nov 26 11:09 start_atlas.sh
[2025-11-27 08:38:46] -rw-r--r--. 2 boinc boinc    590103 Nov 26 11:09 input.tar.gz
[2025-11-27 08:38:46] -rw-------. 1 boinc boinc 917153464 Nov 27 08:35 HITS.pool.root.1
[2025-11-27 08:38:46] -rw-------. 1 boinc boinc  12718080 Nov 27 08:38 result.tar.gz
08:38:47 (23470): run_atlas exited; CPU time 287078.205896
08:38:47 (23470): called boinc_finish(0)

</stderr_txt>
]]>

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