Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:32:00 (2749772): wrapper (7.7.26015): starting
20:32:00 (2749772): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 20:32:00] Arguments: --nthreads 8
[2025-11-23 20:32:00] Threads: 8
[2025-11-23 20:32:00] Checking for CVMFS
[2025-11-23 20:32:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 20:32:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 20:32:01] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 20:32:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 20:32:03] 2.13.3.0 12085 25080 375460 153228 2 329 23325162 25181184 27381 16776704 0 139632079 99.591 144745681 22350 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-23 20:32:03] CVMFS is ok
[2025-11-23 20:32:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 20:32:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 20:32:03] Further information can be found at the LHC@home message board.
[2025-11-23 20:32:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 20:32:03] Checking for apptainer binary...
[2025-11-23 20:32:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 20:32:03] Running /usr/bin/apptainer --version
[2025-11-23 20:32:03] apptainer version 1.4.4-1.el9
[2025-11-23 20:32:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 20:32:03] c-16-38.aglt2.org
[2025-11-23 20:32:03] apptainer works
[2025-11-23 20:32:03] Set ATHENA_PROC_NUMBER=8
[2025-11-23 20:32:03] Set ATHENA_CORE_NUMBER=8
[2025-11-23 20:32:04] Starting ATLAS job with PandaID=6895353437
[2025-11-23 20:32:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 05:07:30]  *** The last 200 lines of the pilot log: ***
[2025-11-25 05:07:30] 2025-11-25 10:06:49,674 | INFO     | mean x: 1764006670.7733195
[2025-11-25 05:07:30] 2025-11-25 10:06:49,674 | INFO     | mean y: 2924797.1182907764
[2025-11-25 05:07:30] 2025-11-25 10:06:49,674 | INFO     | intersect: -8666106763.370762
[2025-11-25 05:07:30] 2025-11-25 10:06:49,681 | INFO     | chi2: 12.599960125952112
[2025-11-25 05:07:30] 2025-11-25 10:06:49,690 | INFO     | sum of square deviations: 2174082850354.3403
[2025-11-25 05:07:30] 2025-11-25 10:06:50,000 | INFO     | sum of deviations: 11433891802203.557
[2025-11-25 05:07:30] 2025-11-25 10:06:50,000 | INFO     | mean x: 1764006518.2805643
[2025-11-25 05:07:30] 2025-11-25 10:06:50,000 | INFO     | mean y: 2930739.101358412
[2025-11-25 05:07:30] 2025-11-25 10:06:50,000 | INFO     | intersect: -9274296053.389318
[2025-11-25 05:07:30] 2025-11-25 10:06:50,007 | INFO     | chi2: 9.341987098771671
[2025-11-25 05:07:30] 2025-11-25 10:06:50,011 | INFO     | current chi2=9.341987098771671 (change=25.857010614422503 %)
[2025-11-25 05:07:30] 2025-11-25 10:06:50,014 | INFO     | sum of square deviations: 2157089111621.3752
[2025-11-25 05:07:30] 2025-11-25 10:06:50,202 | INFO     | sum of deviations: 11683574184612.666
[2025-11-25 05:07:30] 2025-11-25 10:06:50,203 | INFO     | mean x: 1764006365.7857518
[2025-11-25 05:07:30] 2025-11-25 10:06:50,203 | INFO     | mean y: 2932975.7375589316
[2025-11-25 05:07:30] 2025-11-25 10:06:50,214 | INFO     | intersect: -9551563000.228586
[2025-11-25 05:07:30] 2025-11-25 10:06:50,217 | INFO     | chi2: 8.120996747084279
[2025-11-25 05:07:30] 2025-11-25 10:06:50,225 | INFO     | current chi2=8.120996747084279 (change=13.069921193189554 %)
[2025-11-25 05:07:30] 2025-11-25 10:06:50,225 | INFO     | right removable region: 1908
[2025-11-25 05:07:30] 2025-11-25 10:06:50,227 | INFO     | sum of square deviations: 2174079603934.3376
[2025-11-25 05:07:30] 2025-11-25 10:06:50,632 | INFO     | sum of deviations: 9996842499245.885
[2025-11-25 05:07:30] 2025-11-25 10:06:50,632 | INFO     | mean x: 1764006823.2805643
[2025-11-25 05:07:30] 2025-11-25 10:06:50,633 | INFO     | mean y: 2931681.929467085
[2025-11-25 05:07:30] 2025-11-25 10:06:50,633 | INFO     | intersect: -8108316106.798454
[2025-11-25 05:07:30] 2025-11-25 10:06:50,640 | INFO     | chi2: 8.566257360788255
[2025-11-25 05:07:30] 2025-11-25 10:06:50,640 | INFO     | current chi2=8.566257360788255 (change=32.01361531974731 %)
[2025-11-25 05:07:30] 2025-11-25 10:06:50,646 | INFO     | sum of square deviations: 2157083085293.078
[2025-11-25 05:07:30] 2025-11-25 10:06:50,860 | INFO     | sum of deviations: 9370098077996.615
[2025-11-25 05:07:30] 2025-11-25 10:06:50,860 | INFO     | mean x: 1764006975.787847
[2025-11-25 05:07:30] 2025-11-25 10:06:50,860 | INFO     | mean y: 2937304.25091671
[2025-11-25 05:07:30] 2025-11-25 10:06:50,860 | INFO     | intersect: -7659687508.903456
[2025-11-25 05:07:30] 2025-11-25 10:06:50,863 | INFO     | chi2: 6.003898968984274
[2025-11-25 05:07:30] 2025-11-25 10:06:50,863 | INFO     | current chi2=6.003898968984274 (change=29.912227521123608 %)
[2025-11-25 05:07:30] 2025-11-25 10:06:50,870 | INFO     | sum of square deviations: 2140175940420.0515
[2025-11-25 05:07:30] 2025-11-25 10:06:51,199 | INFO     | time since job start (117211s) is within the limit (172800.0s)
[2025-11-25 05:07:30] 2025-11-25 10:06:51,337 | INFO     | sum of deviations: 9054155916799.182
[2025-11-25 05:07:30] 2025-11-25 10:06:51,337 | INFO     | mean x: 1764007128.292542
[2025-11-25 05:07:30] 2025-11-25 10:06:51,349 | INFO     | mean y: 2940152.337184874
[2025-11-25 05:07:30] 2025-11-25 10:06:51,350 | INFO     | intersect: -7459808716.230655
[2025-11-25 05:07:30] 2025-11-25 10:06:51,363 | INFO     | chi2: 5.366999278473735
[2025-11-25 05:07:30] 2025-11-25 10:06:51,364 | INFO     | current chi2=5.366999278473735 (change=10.608101398786335 %)
[2025-11-25 05:07:30] 2025-11-25 10:06:51,364 | INFO     | left removable region: 30
[2025-11-25 05:07:30] 2025-11-25 10:06:51,366 | INFO     | sum of square deviations: 2053692956343.9983
[2025-11-25 05:07:30] 2025-11-25 10:06:51,679 | INFO     | sum of deviations: 9570960548837.738
[2025-11-25 05:07:30] 2025-11-25 10:06:51,680 | INFO     | mean x: 1764007250.2891374
[2025-11-25 05:07:30] 2025-11-25 10:06:51,680 | INFO     | mean y: 2951960.8844515444
[2025-11-25 05:07:30] 2025-11-25 10:06:51,680 | INFO     | intersect: -8217967212.1728325
[2025-11-25 05:07:30] 2025-11-25 10:06:51,682 | INFO     | chi2: 0.7755802399736941
[2025-11-25 05:07:30] 2025-11-25 10:06:51,683 | INFO     | current memory leak: 4.66 B/s (using 1878 data points, chi2=0.78)
[2025-11-25 05:07:30] 2025-11-25 10:06:51,685 | INFO     | could have reported an average CPU frequency of 2803 MHz (67 samples)
[2025-11-25 05:07:30] 2025-11-25 10:06:51,685 | INFO     | ..............................
[2025-11-25 05:07:30] 2025-11-25 10:06:51,685 | INFO     | . Timing measurements:
[2025-11-25 05:07:30] 2025-11-25 10:06:51,685 | INFO     | . get job = 0 s
[2025-11-25 05:07:30] 2025-11-25 10:06:51,685 | INFO     | . initial setup = 8 s
[2025-11-25 05:07:30] 2025-11-25 10:06:51,686 | INFO     | . payload setup = 52 s
[2025-11-25 05:07:30] 2025-11-25 10:06:51,686 | INFO     | . stage-in = 0 s
[2025-11-25 05:07:30] 2025-11-25 10:06:51,686 | INFO     | . payload execution = 117053 s
[2025-11-25 05:07:30] 2025-11-25 10:06:51,686 | INFO     | . stage-out = 6 s
[2025-11-25 05:07:30] 2025-11-25 10:06:51,686 | INFO     | . log creation = 1 s
[2025-11-25 05:07:30] 2025-11-25 10:06:51,686 | INFO     | ..............................
[2025-11-25 05:07:30] 2025-11-25 10:06:51,806 | INFO     | 
[2025-11-25 05:07:30] 2025-11-25 10:06:51,807 | INFO     | job summary report
[2025-11-25 05:07:30] 2025-11-25 10:06:51,807 | INFO     | --------------------------------------------------
[2025-11-25 05:07:30] 2025-11-25 10:06:51,807 | INFO     | PanDA job id: 6895353437
[2025-11-25 05:07:30] 2025-11-25 10:06:51,807 | INFO     | task id: 47556137
[2025-11-25 05:07:30] 2025-11-25 10:06:51,807 | INFO     | errors: (none)
[2025-11-25 05:07:30] 2025-11-25 10:06:51,807 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 05:07:30] 2025-11-25 10:06:51,807 | INFO     | pilot state: finished 
[2025-11-25 05:07:30] 2025-11-25 10:06:51,807 | INFO     | transexitcode: 0
[2025-11-25 05:07:30] 2025-11-25 10:06:51,808 | INFO     | exeerrorcode: 0
[2025-11-25 05:07:30] 2025-11-25 10:06:51,808 | INFO     | exeerrordiag: 
[2025-11-25 05:07:30] 2025-11-25 10:06:51,808 | INFO     | exitcode: 0
[2025-11-25 05:07:30] 2025-11-25 10:06:51,808 | INFO     | exitmsg: OK
[2025-11-25 05:07:30] 2025-11-25 10:06:51,808 | INFO     | cpuconsumptiontime: 328486 s
[2025-11-25 05:07:30] 2025-11-25 10:06:51,808 | INFO     | nevents: 1000
[2025-11-25 05:07:30] 2025-11-25 10:06:51,808 | INFO     | neventsw: 0
[2025-11-25 05:07:30] 2025-11-25 10:06:51,808 | INFO     | pid: 2765911
[2025-11-25 05:07:30] 2025-11-25 10:06:51,808 | INFO     | pgrp: 2765911
[2025-11-25 05:07:30] 2025-11-25 10:06:51,809 | INFO     | corecount: 8
[2025-11-25 05:07:30] 2025-11-25 10:06:51,809 | INFO     | event service: False
[2025-11-25 05:07:30] 2025-11-25 10:06:51,809 | INFO     | sizes: {0: 2297979, 1: 2298664, 2: 2298664, 3: 2298891, 4: 2298891, 16: 2298919, 27: 2299075, 37: 2299365, 38: 2299393, 49: 2299421, 117107: 2375887, 117108: 23761
[2025-11-25 05:07:30] 2025-11-25 10:06:51,809 | INFO     | --------------------------------------------------
[2025-11-25 05:07:30] 2025-11-25 10:06:51,809 | INFO     | 
[2025-11-25 05:07:30] 2025-11-25 10:06:51,809 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-25 05:07:30] 2025-11-25 10:06:51,846 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 05:07:30] 2025-11-25 10:06:51,847 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 05:07:30] 2025-11-25 10:06:51,847 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 05:07:30] 2025-11-25 10:06:51,847 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 05:07:30] 2025-11-25 10:06:51,847 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 05:07:30] 2025-11-25 10:06:51,847 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 05:07:30] 2025-11-25 10:06:51,847 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 05:07:30] 2025-11-25 10:06:51,848 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 05:07:30] 2025-11-25 10:06:51,848 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 05:07:30] 2025-11-25 10:06:51,848 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 05:07:30] 2025-11-25 10:06:51,848 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 05:07:30] 2025-11-25 10:06:51,848 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 05:07:30] 2025-11-25 10:06:51,848 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 05:07:30] 2025-11-25 10:06:51,848 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 05:07:30] 2025-11-25 10:06:51,849 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 05:07:30] 2025-11-25 10:06:51,849 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 05:07:30] 2025-11-25 10:06:51,849 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 05:07:30] 2025-11-25 10:06:51,849 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 05:07:30] 2025-11-25 10:06:51,853 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 05:07:30] 2025-11-25 10:06:51,853 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 05:07:30] 2025-11-25 10:06:51,854 | INFO     | job 6895353437 has completed (purged errors)
[2025-11-25 05:07:30] 2025-11-25 10:06:51,854 | INFO     | overall cleanup function is called
[2025-11-25 05:07:30] 2025-11-25 10:06:52,898 | INFO     | --- collectZombieJob: --- 10, [2765911]
[2025-11-25 05:07:30] 2025-11-25 10:06:52,898 | INFO     | zombie collector waiting for pid 2765911
[2025-11-25 05:07:30] 2025-11-25 10:06:52,898 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 05:07:30] 2025-11-25 10:06:52,898 | INFO     | collected zombie processes
[2025-11-25 05:07:30] 2025-11-25 10:06:52,898 | INFO     | will attempt to kill all subprocesses of pid=2765911
[2025-11-25 05:07:30] 2025-11-25 10:06:55,865 | INFO     | PID=2754540 has CPU usage=23.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-25 05:07:30] 2025-11-25 10:06:55,885 | INFO     | .. there are 50 such processes running
[2025-11-25 05:07:30] 2025-11-25 10:06:56,135 | INFO     | process IDs to be killed: [2765911] (in reverse order)
[2025-11-25 05:07:30] 2025-11-25 10:06:56,390 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 05:07:30] 2025-11-25 10:06:56,390 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 05:07:30] 2025-11-25 10:06:56,408 | INFO     | did not find any defunct processes belonging to 2765911
[2025-11-25 05:07:30] 2025-11-25 10:06:56,425 | INFO     | did not find any defunct processes belonging to 2765911
[2025-11-25 05:07:30] 2025-11-25 10:06:56,427 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 05:07:30] 2025-11-25 10:06:56,427 | INFO     | ready for new job
[2025-11-25 05:07:30] 2025-11-25 10:06:56,427 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 05:07:30] 2025-11-25 10:06:56,435 | INFO     | ***************************************
[2025-11-25 05:07:30] 2025-11-25 10:06:56,435 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 05:07:30] 2025-11-25 10:06:56,435 | INFO     | ***************************************
[2025-11-25 05:07:30] 2025-11-25 10:06:56,435 | INFO     | 
[2025-11-25 05:07:30] 2025-11-25 10:06:56,438 | INFO     | architecture information:
[2025-11-25 05:07:30] 2025-11-25 10:06:56,438 | INFO     | executing command: cat /etc/os-release
[2025-11-25 05:07:30] 2025-11-25 10:06:56,457 | INFO     | cat /etc/os-release:
[2025-11-25 05:07:30] NAME="CentOS Linux"
[2025-11-25 05:07:30] VERSION="7 (Core)"
[2025-11-25 05:07:30] ID="centos"
[2025-11-25 05:07:30] ID_LIKE="rhel fedora"
[2025-11-25 05:07:30] VERSION_ID="7"
[2025-11-25 05:07:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 05:07:30] ANSI_COLOR="0;31"
[2025-11-25 05:07:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 05:07:30] HOME_URL="https://www.centos.org/"
[2025-11-25 05:07:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 05:07:30] 
[2025-11-25 05:07:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 05:07:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 05:07:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 05:07:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 05:07:30] 
[2025-11-25 05:07:30] 2025-11-25 10:06:56,458 | INFO     | ***************************************
[2025-11-25 05:07:30] 2025-11-25 10:06:56,963 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-25 05:07:30] 2025-11-25 10:06:56,991 | INFO     | sufficient remaining disk space (60306751488 B)
[2025-11-25 05:07:30] 2025-11-25 10:06:56,992 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 05:07:30] 2025-11-25 10:06:56,992 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 05:07:30] 2025-11-25 10:06:56,992 | INFO     | update_server=False
[2025-11-25 05:07:30] 2025-11-25 10:06:56,992 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 05:07:30] 2025-11-25 10:06:56,993 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 05:07:30] 2025-11-25 10:06:57,115 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 05:07:30] 2025-11-25 10:06:57,115 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 05:07:30] 2025-11-25 10:06:57,116 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 05:07:30] 2025-11-25 10:06:57,116 | INFO     | will abort loop
[2025-11-25 05:07:30] 2025-11-25 10:06:57,180 | INFO     | all payload control threads have been joined
[2025-11-25 05:07:30] 2025-11-25 10:06:57,463 | INFO     | all job control threads have been joined
[2025-11-25 05:07:30] 2025-11-25 10:06:57,657 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 05:07:30] 2025-11-25 10:06:57,980 | INFO     | all data control threads have been joined
[2025-11-25 05:07:30] 2025-11-25 10:06:57,998 | INFO     | [job] retrieve thread has finished
[2025-11-25 05:07:30] 2025-11-25 10:06:58,009 | INFO     | [job] queue monitor thread has finished
[2025-11-25 05:07:30] 2025-11-25 10:06:58,121 | INFO     | [job] job monitor thread has finished
[2025-11-25 05:07:30] 2025-11-25 10:06:58,186 | INFO     | [payload] control thread has finished
[2025-11-25 05:07:30] 2025-11-25 10:06:58,374 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 05:07:30] 2025-11-25 10:06:58,438 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 05:07:30] 2025-11-25 10:06:58,470 | INFO     | [job] control thread has finished
[2025-11-25 05:07:30] 2025-11-25 10:06:58,673 | INFO     | [job] validate thread has finished
[2025-11-25 05:07:30] 2025-11-25 10:06:58,863 | INFO     | [payload] failed_post thread has finished
[2025-11-25 05:07:30] 2025-11-25 10:06:58,987 | INFO     | [data] control thread has finished
[2025-11-25 05:07:30] 2025-11-25 10:06:59,051 | INFO     | [data] copytool_in thread has finished
[2025-11-25 05:07:30] 2025-11-25 10:06:59,239 | INFO     | [payload] validate_post thread has finished
[2025-11-25 05:07:30] 2025-11-25 10:06:59,283 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 05:07:30] 2025-11-25 10:06:59,294 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 05:07:30] 2025-11-25 10:06:59,667 | INFO     | [data] copytool_out thread has finished
[2025-11-25 05:07:30] 2025-11-25 10:07:00,111 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 05:07:30] 2025-11-25 10:07:01,502 | INFO     | [monitor] cgroup control has ended
[2025-11-25 05:07:30] 2025-11-25 10:07:04,126 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 05:07:30] 2025-11-25 10:07:05,836 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140627601704768)>', '<ExcThread(monitor, started 140626884552448)>']
[2025-11-25 05:07:30] 2025-11-25 10:07:10,862 | INFO     | all workflow threads have been joined
[2025-11-25 05:07:30] 2025-11-25 10:07:10,863 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 05:07:30] 2025-11-25 10:07:10,864 | INFO     | traces error code: 0
[2025-11-25 05:07:30] 2025-11-25 10:07:10,864 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 05:07:30] 2025-11-25 10:07:29,362 | INFO     | PID=2754540 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 05:07:30] 2025-11-25 10:07:29,363 | INFO     | .. there are 50 such processes running
[2025-11-25 05:07:30] 2025-11-25 10:07:29,364 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 05:07:30] 2025-11-25 10:07:29,364 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 05:07:30] 2025-11-25 10:07:29,364 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 05:07:30] 2025-11-25 10:07:29,364 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 05:07:30] 2025-11-25 10:07:29,364 | INFO     | [monitor] control thread has ended
[2025-11-25 05:07:30] 2025-11-25 10:07:29,961 [wrapper] ==== pilot stdout END ====
[2025-11-25 05:07:30] 2025-11-25 10:07:30,062 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 05:07:30] 2025-11-25 10:07:30,076 [wrapper] pilotpid: 2754540
[2025-11-25 05:07:30] 2025-11-25 10:07:30,078 [wrapper] Pilot exit status: 0
[2025-11-25 05:07:30] 2025-11-25 10:07:30,104 [wrapper] pandaids: 6895353437
[2025-11-25 05:07:30] 2025-11-25 10:07:30,192 [wrapper] cleanup supervisor_pilot 1844195 2754541
[2025-11-25 05:07:30] 2025-11-25 10:07:30,195 [wrapper] Test setup, not cleaning
[2025-11-25 05:07:30] 2025-11-25 10:07:30,199 [wrapper] apfmon messages muted
[2025-11-25 05:07:30] 2025-11-25 10:07:30,201 [wrapper] ==== wrapper stdout END ====
[2025-11-25 05:07:30] 2025-11-25 10:07:30,204 [wrapper] ==== wrapper stderr END ====
[2025-11-25 05:07:30]  *** Error codes and diagnostics ***
[2025-11-25 05:07:30]     "exeErrorCode": 0,
[2025-11-25 05:07:30]     "exeErrorDiag": "",
[2025-11-25 05:07:30]     "pilotErrorCode": 0,
[2025-11-25 05:07:30]     "pilotErrorDiag": "",
[2025-11-25 05:07:30]  *** Listing of results directory ***
[2025-11-25 05:07:30] total 1345592
[2025-11-25 05:07:30] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 23:55 pilot3.tar.gz
[2025-11-25 05:07:30] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 00:12 queuedata.json
[2025-11-25 05:07:30] -rwx------. 1 boincer umatlas     36292 Nov 23 00:13 runpilot2-wrapper.sh
[2025-11-25 05:07:30] -rw-r--r--. 1 boincer umatlas       100 Nov 23 20:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 05:07:30] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 23 20:31 run_atlas
[2025-11-25 05:07:30] -rw-r--r--. 1 boincer umatlas       105 Nov 23 20:31 job.xml
[2025-11-25 05:07:30] -rw-r--r--. 2 boincer umatlas 411230018 Nov 23 20:32 EVNT.47483658._000623.pool.root.1
[2025-11-25 05:07:30] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 20:32 start_atlas.sh
[2025-11-25 05:07:30] drwxrwx--x. 2 boincer umatlas      4096 Nov 23 20:32 shared
[2025-11-25 05:07:30] -rw-r--r--. 2 boincer umatlas    590100 Nov 23 20:32 input.tar.gz
[2025-11-25 05:07:30] -rw-r--r--. 1 boincer umatlas         0 Nov 23 20:32 boinc_lockfile
[2025-11-25 05:07:30] -rw-r--r--. 1 boincer umatlas      2786 Nov 23 20:32 pandaJob.out
[2025-11-25 05:07:30] -rw-------. 1 boincer umatlas        57 Nov 23 20:32 setup.sh.local
[2025-11-25 05:07:30] -rw-------. 1 boincer umatlas    989786 Nov 23 20:33 agis_schedconf.cvmfs.json
[2025-11-25 05:07:30] drwx------. 5 boincer umatlas      4096 Nov 23 20:33 pilot3
[2025-11-25 05:07:30] -rw-r--r--. 1 boincer umatlas       534 Nov 25 04:58 boinc_task_state.xml
[2025-11-25 05:07:30] -rw-r--r--. 1 boincer umatlas      6615 Nov 25 05:01 init_data.xml
[2025-11-25 05:07:30] -rw-------. 1 boincer umatlas 929971099 Nov 25 05:05 HITS.47556137._006188.pool.root.1
[2025-11-25 05:07:30] -rw-------. 1 boincer umatlas      1059 Nov 25 05:06 memory_monitor_summary.json
[2025-11-25 05:07:30] -rw-------. 1 boincer umatlas   1516240 Nov 25 05:06 agis_ddmendpoints.agis.ALL.json
[2025-11-25 05:07:30] -rw-------. 1 boincer umatlas   2746925 Nov 25 05:06 log.47556137._006188.job.log.tgz.1
[2025-11-25 05:07:30] -rw-------. 1 boincer umatlas      8617 Nov 25 05:06 heartbeat.json
[2025-11-25 05:07:30] -rw-------. 1 boincer umatlas        95 Nov 25 05:06 pilot_heartbeat.json
[2025-11-25 05:07:30] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 05:07 boinc_mmap_file
[2025-11-25 05:07:30] -rw-r--r--. 1 boincer umatlas        30 Nov 25 05:07 wrapper_checkpoint.txt
[2025-11-25 05:07:30] -rw-------. 1 boincer umatlas       823 Nov 25 05:07 pilotlog.txt
[2025-11-25 05:07:30] -rw-------. 1 boincer umatlas  13641746 Nov 25 05:07 log.47556137._006188.job.log.1
[2025-11-25 05:07:30] -rw-------. 1 boincer umatlas       353 Nov 25 05:07 output.list
[2025-11-25 05:07:30] -rw-r--r--. 1 boincer umatlas       620 Nov 25 05:07 runtime_log
[2025-11-25 05:07:30] -rw-------. 1 boincer umatlas  16404480 Nov 25 05:07 result.tar.gz
[2025-11-25 05:07:30] -rw-r--r--. 1 boincer umatlas      9339 Nov 25 05:07 runtime_log.err
[2025-11-25 05:07:30] -rw-------. 1 boincer umatlas       662 Nov 25 05:07 Fc4NDmgaHh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmBeKKDmLJeoIm.diag
[2025-11-25 05:07:30] -rw-r--r--. 1 boincer umatlas     21357 Nov 25 05:07 stderr.txt
[2025-11-25 05:07:30] HITS file was successfully produced:
[2025-11-25 05:07:30] -rw-------. 1 boincer umatlas 929971099 Nov 25 05:05 shared/HITS.pool.root.1
[2025-11-25 05:07:30]  *** Contents of shared directory: ***
[2025-11-25 05:07:30] total 1326392
[2025-11-25 05:07:30] -rw-r--r--. 2 boincer umatlas 411230018 Nov 23 20:32 ATLAS.root_0
[2025-11-25 05:07:30] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 20:32 start_atlas.sh
[2025-11-25 05:07:30] -rw-r--r--. 2 boincer umatlas    590100 Nov 23 20:32 input.tar.gz
[2025-11-25 05:07:30] -rw-------. 1 boincer umatlas 929971099 Nov 25 05:05 HITS.pool.root.1
[2025-11-25 05:07:30] -rw-------. 1 boincer umatlas  16404480 Nov 25 05:07 result.tar.gz
05:07:32 (2749772): run_atlas exited; CPU time 333605.853090
05:07:32 (2749772): called boinc_finish(0)

</stderr_txt>
]]>

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