Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:52:40 (467315): wrapper (7.7.26015): starting
01:52:40 (467315): wrapper: running run_atlas (--nthreads 3)
[2025-11-24 01:52:40] Arguments: --nthreads 3
[2025-11-24 01:52:40] Threads: 3
[2025-11-24 01:52:40] Checking for CVMFS
[2025-11-24 01:52:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 01:52:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 01:52:40] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 01:52:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 01:52:40] 2.9.2.0 154488 67 58144 153227 0 88 34930736 36864001 0 130560 0 939070 100.000 1302 1243 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-24 01:52:40] CVMFS is ok
[2025-11-24 01:52:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 01:52:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 01:52:40] Further information can be found at the LHC@home message board.
[2025-11-24 01:52:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 01:52:40] Checking for apptainer binary...
[2025-11-24 01:52:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 01:52:40] Running /usr/bin/apptainer --version
[2025-11-24 01:52:40] apptainer version 1.4.1-1.1
[2025-11-24 01:52:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 01:52:41] thA335
[2025-11-24 01:52:41] apptainer works
[2025-11-24 01:52:41] Set ATHENA_PROC_NUMBER=3
[2025-11-24 01:52:41] Set ATHENA_CORE_NUMBER=3
[2025-11-24 01:52:41] Starting ATLAS job with PandaID=6893845808
[2025-11-24 01:52:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 01:56:58]  *** The last 200 lines of the pilot log: ***
[2025-11-24 01:56:58] NAME="CentOS Linux"
[2025-11-24 01:56:58] VERSION="7 (Core)"
[2025-11-24 01:56:58] ID="centos"
[2025-11-24 01:56:58] ID_LIKE="rhel fedora"
[2025-11-24 01:56:58] VERSION_ID="7"
[2025-11-24 01:56:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 01:56:58] ANSI_COLOR="0;31"
[2025-11-24 01:56:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 01:56:58] HOME_URL="https://www.centos.org/"
[2025-11-24 01:56:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 01:56:58] 
[2025-11-24 01:56:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 01:56:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 01:56:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 01:56:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 01:56:58] 
[2025-11-24 01:56:58] 2025-11-24 00:56:02,078 | INFO     | ***************************************
[2025-11-24 01:56:58] 2025-11-24 00:56:02,582 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-24 01:56:58] 2025-11-24 00:56:02,595 | INFO     | sufficient remaining disk space (827106263040 B)
[2025-11-24 01:56:58] 2025-11-24 00:56:02,595 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 01:56:58] 2025-11-24 00:56:02,595 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 01:56:58] 2025-11-24 00:56:02,595 | INFO     | update_server=False
[2025-11-24 01:56:58] 2025-11-24 00:56:02,595 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 01:56:58] 2025-11-24 00:56:02,595 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 01:56:58] 2025-11-24 00:56:02,595 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 01:56:58] 2025-11-24 00:56:02,683 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-24 01:56:58] 2025-11-24 00:56:02,683 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-24 01:56:58] 2025-11-24 00:56:02,686 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 01:56:58] 2025-11-24 00:56:02,686 | INFO     | will abort loop
[2025-11-24 01:56:58] 2025-11-24 00:56:03,149 | INFO     | all data control threads have been joined
[2025-11-24 01:56:58] 2025-11-24 00:56:03,348 | INFO     | all job control threads have been joined
[2025-11-24 01:56:58] 2025-11-24 00:56:03,391 | INFO     | all payload control threads have been joined
[2025-11-24 01:56:58] 2025-11-24 00:56:03,601 | INFO     | [job] queue monitor thread has finished
[2025-11-24 01:56:58] 2025-11-24 00:56:03,602 | INFO     | [job] retrieve thread has finished
[2025-11-24 01:56:58] 2025-11-24 00:56:03,692 | INFO     | [job] job monitor thread has finished
[2025-11-24 01:56:58] 2025-11-24 00:56:03,699 | INFO     | [payload] validate_post thread has finished
[2025-11-24 01:56:58] 2025-11-24 00:56:03,909 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 01:56:58] 2025-11-24 00:56:04,155 | INFO     | [data] control thread has finished
[2025-11-24 01:56:58] 2025-11-24 00:56:04,197 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 01:56:58] 2025-11-24 00:56:04,355 | INFO     | [job] control thread has finished
[2025-11-24 01:56:58] 2025-11-24 00:56:04,377 | INFO     | [job] validate thread has finished
[2025-11-24 01:56:58] 2025-11-24 00:56:04,396 | INFO     | [payload] control thread has finished
[2025-11-24 01:56:58] 2025-11-24 00:56:04,468 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 01:56:58] 2025-11-24 00:56:04,481 | INFO     | [payload] failed_post thread has finished
[2025-11-24 01:56:58] 2025-11-24 00:56:04,513 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 01:56:58] 2025-11-24 00:56:04,602 | INFO     | [data] copytool_out thread has finished
[2025-11-24 01:56:58] 2025-11-24 00:56:04,617 | INFO     | [data] copytool_in thread has finished
[2025-11-24 01:56:58] 2025-11-24 00:56:05,056 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 01:56:58] 2025-11-24 00:56:09,064 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 01:56:58] 2025-11-24 00:56:32,936 | INFO     | PID=471046 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-24 01:56:58] 2025-11-24 00:56:32,936 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 01:56:58] 2025-11-24 00:56:32,936 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 01:56:58] 2025-11-24 00:56:32,936 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 01:56:58] 2025-11-24 00:56:52,111 | INFO     | [monitor] cgroup control has ended
[2025-11-24 01:56:58] 2025-11-24 00:56:52,938 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139661911185216)>', '<ExcThread(monitor, started 139661171214080)>']
[2025-11-24 01:56:58] 2025-11-24 00:56:53,043 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 01:56:58] 2025-11-24 00:56:53,043 | INFO     | [monitor] control thread has ended
[2025-11-24 01:56:58] 2025-11-24 00:56:57,959 | INFO     | all workflow threads have been joined
[2025-11-24 01:56:58] 2025-11-24 00:56:57,959 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 01:56:58] 2025-11-24 00:56:57,960 | INFO     | traces error code: 0
[2025-11-24 01:56:58] 2025-11-24 00:56:57,960 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 01:56:58] 2025-11-24 00:56:58,007 [wrapper] ==== pilot stdout END ====
[2025-11-24 01:56:58] 2025-11-24 00:56:58,010 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 01:56:58] 2025-11-24 00:56:58,012 [wrapper] pilotpid: 471046
[2025-11-24 01:56:58] 2025-11-24 00:56:58,015 [wrapper] Pilot exit status: 0
[2025-11-24 01:56:58] 2025-11-24 00:56:58,021 [wrapper] pandaids: 6893845808
[2025-11-24 01:56:58] 2025-11-24 00:56:58,039 [wrapper] cleanup supervisor_pilot  471052 471047
[2025-11-24 01:56:58] 2025-11-24 00:56:58,042 [wrapper] Test setup, not cleaning
[2025-11-24 01:56:58] 2025-11-24 00:56:58,044 [wrapper] apfmon messages muted
[2025-11-24 01:56:58] 2025-11-24 00:56:58,047 [wrapper] ==== wrapper stdout END ====
[2025-11-24 01:56:58] 2025-11-24 00:56:58,050 [wrapper] ==== wrapper stderr END ====
[2025-11-24 01:56:58]  *** Error codes and diagnostics ***
[2025-11-24 01:56:58]     "exeErrorCode": 65,
[2025-11-24 01:56:58]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-24 01:56:58]     "pilotErrorCode": 1305,
[2025-11-24 01:56:58]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-24 01:56:58]  *** Listing of results directory ***
[2025-11-24 01:56:58] total 404068
[2025-11-24 01:56:58] -rw-r--r-- 1 boinc boinc    576529 Nov 20 11:06 pilot3.tar.gz
[2025-11-24 01:56:58] -rwx------ 1 boinc boinc     36292 Nov 20 11:21 runpilot2-wrapper.sh
[2025-11-24 01:56:58] -rw-r--r-- 1 boinc boinc      5112 Nov 20 11:23 queuedata.json
[2025-11-24 01:56:58] -rw-r--r-- 1 boinc boinc       100 Nov 24 01:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 01:56:58] -rwxr-xr-x 1 boinc boinc      7986 Nov 24 01:52 run_atlas
[2025-11-24 01:56:58] -rw-r--r-- 1 boinc boinc       105 Nov 24 01:52 job.xml
[2025-11-24 01:56:58] -rw-r--r-- 2 boinc boinc 409569689 Nov 24 01:52 EVNT.47493127._000212.pool.root.1
[2025-11-24 01:56:58] -rw-r--r-- 2 boinc boinc    590102 Nov 24 01:52 input.tar.gz
[2025-11-24 01:56:58] -rw-r--r-- 2 boinc boinc     15847 Nov 24 01:52 start_atlas.sh
[2025-11-24 01:56:58] drwxrwx--x 2 boinc boinc      4096 Nov 24 01:52 shared
[2025-11-24 01:56:58] -rw-r--r-- 1 boinc boinc         0 Nov 24 01:52 boinc_setup_complete
[2025-11-24 01:56:58] -rw-r--r-- 1 boinc boinc      6195 Nov 24 01:52 init_data.xml
[2025-11-24 01:56:58] -rw-r--r-- 1 boinc boinc         0 Nov 24 01:52 boinc_lockfile
[2025-11-24 01:56:58] -rw-r--r-- 1 boinc boinc      2786 Nov 24 01:52 pandaJob.out
[2025-11-24 01:56:58] -rw------- 1 boinc boinc    989786 Nov 24 01:52 agis_schedconf.cvmfs.json
[2025-11-24 01:56:58] -rw------- 1 boinc boinc   1526164 Nov 24 01:52 agis_ddmendpoints.agis.ALL.json
[2025-11-24 01:56:58] drwx------ 5 boinc boinc      4096 Nov 24 01:52 pilot3
[2025-11-24 01:56:58] -rw-r--r-- 1 boinc boinc       522 Nov 24 01:53 boinc_task_state.xml
[2025-11-24 01:56:58] -rw------- 1 boinc boinc       956 Nov 24 01:53 memory_monitor_summary.json
[2025-11-24 01:56:58] -rw------- 1 boinc boinc     55558 Nov 24 01:53 log.47523449._002119.job.log.tgz.1
[2025-11-24 01:56:58] -rw------- 1 boinc boinc        95 Nov 24 01:55 pilot_heartbeat.json
[2025-11-24 01:56:58] -rw------- 1 boinc boinc      8385 Nov 24 01:56 heartbeat.json
[2025-11-24 01:56:58] -rw-r--r-- 1 boinc boinc        22 Nov 24 01:56 wrapper_checkpoint.txt
[2025-11-24 01:56:58] -rw-r--r-- 1 boinc boinc      8192 Nov 24 01:56 boinc_mmap_file
[2025-11-24 01:56:58] -rw------- 1 boinc boinc      4937 Nov 24 01:56 pilotlog.txt
[2025-11-24 01:56:58] -rw------- 1 boinc boinc     91736 Nov 24 01:56 log.47523449._002119.job.log.1
[2025-11-24 01:56:58] -rw------- 1 boinc boinc       186 Nov 24 01:56 output.list
[2025-11-24 01:56:58] -rw-r--r-- 1 boinc boinc       620 Nov 24 01:56 runtime_log
[2025-11-24 01:56:58] -rw------- 1 boinc boinc    163840 Nov 24 01:56 result.tar.gz
[2025-11-24 01:56:58] -rw-r--r-- 1 boinc boinc      8744 Nov 24 01:56 runtime_log.err
[2025-11-24 01:56:58] -rw------- 1 boinc boinc       649 Nov 24 01:56 NDoMDmhyGg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmrOHKDmjbYM8n.diag
[2025-11-24 01:56:58] -rw-r--r-- 1 boinc boinc      9304 Nov 24 01:56 stderr.txt
[2025-11-24 01:56:58] No HITS result produced
[2025-11-24 01:56:58]  *** Contents of shared directory: ***
[2025-11-24 01:56:58] total 400732
[2025-11-24 01:56:58] -rw-r--r-- 2 boinc boinc 409569689 Nov 24 01:52 ATLAS.root_0
[2025-11-24 01:56:58] -rw-r--r-- 2 boinc boinc    590102 Nov 24 01:52 input.tar.gz
[2025-11-24 01:56:58] -rw-r--r-- 2 boinc boinc     15847 Nov 24 01:52 start_atlas.sh
[2025-11-24 01:56:58] -rw------- 1 boinc boinc    163840 Nov 24 01:56 result.tar.gz
01:56:59 (467315): run_atlas exited; CPU time 30.491773
01:56:59 (467315): called boinc_finish(0)

</stderr_txt>
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