Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
19:07:41 (45406): wrapper (7.7.26015): starting
19:07:41 (45406): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 19:07:41] Arguments: --nthreads 8
[2025-11-23 19:07:41] Threads: 8
[2025-11-23 19:07:41] Checking for CVMFS
[2025-11-23 19:07:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 19:07:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 19:07:41] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 19:07:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 19:07:42] 2.11.2.0 27562 330447 279908 153226 3 82 12050166 18432000 2827 130560 7 672230980 99.308 1127000094 26039 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-11-23 19:07:42] CVMFS is ok
[2025-11-23 19:07:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 19:07:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 19:07:42] Further information can be found at the LHC@home message board.
[2025-11-23 19:07:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 19:07:42] Checking for apptainer binary...
[2025-11-23 19:07:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 19:07:42] Running /usr/bin/apptainer --version
[2025-11-23 19:07:42] apptainer version 1.3.2-1.el7
[2025-11-23 19:07:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 19:07:43] c-9-30.aglt2.org
[2025-11-23 19:07:43] apptainer works
[2025-11-23 19:07:43] Set ATHENA_PROC_NUMBER=8
[2025-11-23 19:07:43] Set ATHENA_CORE_NUMBER=8
[2025-11-23 19:07:43] Starting ATLAS job with PandaID=6895353812
[2025-11-23 19:07:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 12:13:43]  *** The last 200 lines of the pilot log: ***
[2025-11-24 12:13:43] 2025-11-24 17:13:02,768 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 12:13:43] 2025-11-24 17:13:02,904 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-24 12:13:43] 2025-11-24 17:13:02,908 | INFO     | found 16 cores (8 cores per socket, 2 sockets) HT, CPU MHz: 2999.8970312500014
[2025-11-24 12:13:43] 2025-11-24 17:13:02,911 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6895353812/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 12:13:43] 2025-11-24 17:13:02,912 | INFO     | extracted standard info from prmon json
[2025-11-24 12:13:43] 2025-11-24 17:13:02,912 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 12:13:43] 2025-11-24 17:13:02,912 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 12:13:43] 2025-11-24 17:13:02,925 | INFO     | fitting pss+swap vs Time
[2025-11-24 12:13:43] 2025-11-24 17:13:02,926 | INFO     | sum of square deviations: 317586055520.4753
[2025-11-24 12:13:43] 2025-11-24 17:13:02,941 | INFO     | sum of deviations: 1675319328607.949
[2025-11-24 12:13:43] 2025-11-24 17:13:02,941 | INFO     | mean x: 1763973614.1200397
[2025-11-24 12:13:43] 2025-11-24 17:13:02,942 | INFO     | mean y: 2866201.215277778
[2025-11-24 12:13:43] 2025-11-24 17:13:02,942 | INFO     | intersect: -9302388357.416294
[2025-11-24 12:13:43] 2025-11-24 17:13:02,942 | INFO     | chi2: 4.609777881942716
[2025-11-24 12:13:43] 2025-11-24 17:13:02,943 | INFO     | sum of square deviations: 312883683553.54346
[2025-11-24 12:13:43] 2025-11-24 17:13:02,959 | INFO     | sum of deviations: 1941830089253.1726
[2025-11-24 12:13:43] 2025-11-24 17:13:02,959 | INFO     | mean x: 1763973461.6231306
[2025-11-24 12:13:43] 2025-11-24 17:13:02,959 | INFO     | mean y: 2874838.958125623
[2025-11-24 12:13:43] 2025-11-24 17:13:02,959 | INFO     | intersect: -10944761373.710333
[2025-11-24 12:13:43] 2025-11-24 17:13:02,960 | INFO     | chi2: 2.4655693022986513
[2025-11-24 12:13:43] 2025-11-24 17:13:02,960 | INFO     | current chi2=2.4655693022986513 (change=46.51435784017479 %)
[2025-11-24 12:13:43] 2025-11-24 17:13:02,961 | INFO     | sum of square deviations: 308227963624.092
[2025-11-24 12:13:43] 2025-11-24 17:13:02,987 | INFO     | sum of deviations: 2032242894460.5564
[2025-11-24 12:13:43] 2025-11-24 17:13:02,987 | INFO     | mean x: 1763973309.1262524
[2025-11-24 12:13:43] 2025-11-24 17:13:02,987 | INFO     | mean y: 2877797.5511022042
[2025-11-24 12:13:43] 2025-11-24 17:13:02,987 | INFO     | intersect: -11627547233.78016
[2025-11-24 12:13:43] 2025-11-24 17:13:02,989 | INFO     | chi2: 2.11053132175831
[2025-11-24 12:13:43] 2025-11-24 17:13:02,989 | INFO     | current chi2=2.11053132175831 (change=14.399837806600654 %)
[2025-11-24 12:13:43] 2025-11-24 17:13:02,989 | INFO     | right removable region: 997
[2025-11-24 12:13:43] 2025-11-24 17:13:02,990 | INFO     | sum of square deviations: 312883424914.031
[2025-11-24 12:13:43] 2025-11-24 17:13:03,021 | INFO     | sum of deviations: 1447063498690.9297
[2025-11-24 12:13:43] 2025-11-24 17:13:03,022 | INFO     | mean x: 1763973766.6211367
[2025-11-24 12:13:43] 2025-11-24 17:13:03,022 | INFO     | mean y: 2873590.852442672
[2025-11-24 12:13:43] 2025-11-24 17:13:03,022 | INFO     | intersect: -8155379122.685056
[2025-11-24 12:13:43] 2025-11-24 17:13:03,023 | INFO     | chi2: 2.8561576231155232
[2025-11-24 12:13:43] 2025-11-24 17:13:03,024 | INFO     | current chi2=2.8561576231155232 (change=38.04131790593256 %)
[2025-11-24 12:13:43] 2025-11-24 17:13:03,025 | INFO     | sum of square deviations: 308227569321.57153
[2025-11-24 12:13:43] 2025-11-24 17:13:03,055 | INFO     | sum of deviations: 1387211872660.2185
[2025-11-24 12:13:43] 2025-11-24 17:13:03,055 | INFO     | mean x: 1763973919.1202404
[2025-11-24 12:13:43] 2025-11-24 17:13:03,056 | INFO     | mean y: 2875550.756513026
[2025-11-24 12:13:43] 2025-11-24 17:13:03,056 | INFO     | intersect: -7936081918.403655
[2025-11-24 12:13:43] 2025-11-24 17:13:03,057 | INFO     | chi2: 2.8176406451224922
[2025-11-24 12:13:43] 2025-11-24 17:13:03,057 | INFO     | current chi2=2.8176406451224922 (change=1.348559256019502 %)
[2025-11-24 12:13:43] 2025-11-24 17:13:03,057 | INFO     | left removable region: 20
[2025-11-24 12:13:43] 2025-11-24 17:13:03,059 | INFO     | sum of square deviations: 289177336018.3851
[2025-11-24 12:13:43] 2025-11-24 17:13:03,087 | INFO     | sum of deviations: 1638743722501.4773
[2025-11-24 12:13:43] 2025-11-24 17:13:03,088 | INFO     | mean x: 1763973888.627431
[2025-11-24 12:13:43] 2025-11-24 17:13:03,088 | INFO     | mean y: 2891783.4298874103
[2025-11-24 12:13:43] 2025-11-24 17:13:03,088 | INFO     | intersect: -9993400375.720993
[2025-11-24 12:13:43] 2025-11-24 17:13:03,089 | INFO     | chi2: 0.20778188513199597
[2025-11-24 12:13:43] 2025-11-24 17:13:03,090 | INFO     | current memory leak: 5.67 B/s (using 977 data points, chi2=0.21)
[2025-11-24 12:13:43] 2025-11-24 17:13:03,091 | INFO     | could have reported an average CPU frequency of 2999 MHz (37 samples)
[2025-11-24 12:13:43] 2025-11-24 17:13:03,091 | INFO     | ..............................
[2025-11-24 12:13:43] 2025-11-24 17:13:03,091 | INFO     | . Timing measurements:
[2025-11-24 12:13:43] 2025-11-24 17:13:03,091 | INFO     | . get job = 0 s
[2025-11-24 12:13:43] 2025-11-24 17:13:03,092 | INFO     | . initial setup = 2 s
[2025-11-24 12:13:43] 2025-11-24 17:13:03,092 | INFO     | . payload setup = 5 s
[2025-11-24 12:13:43] 2025-11-24 17:13:03,092 | INFO     | . stage-in = 0 s
[2025-11-24 12:13:43] 2025-11-24 17:13:03,092 | INFO     | . payload execution = 61474 s
[2025-11-24 12:13:43] 2025-11-24 17:13:03,092 | INFO     | . stage-out = 3 s
[2025-11-24 12:13:43] 2025-11-24 17:13:03,092 | INFO     | . log creation = 0 s
[2025-11-24 12:13:43] 2025-11-24 17:13:03,092 | INFO     | ..............................
[2025-11-24 12:13:43] 2025-11-24 17:13:03,238 | INFO     | 
[2025-11-24 12:13:43] 2025-11-24 17:13:03,239 | INFO     | job summary report
[2025-11-24 12:13:43] 2025-11-24 17:13:03,239 | INFO     | --------------------------------------------------
[2025-11-24 12:13:43] 2025-11-24 17:13:03,239 | INFO     | PanDA job id: 6895353812
[2025-11-24 12:13:43] 2025-11-24 17:13:03,239 | INFO     | task id: 47556137
[2025-11-24 12:13:43] 2025-11-24 17:13:03,239 | INFO     | errors: (none)
[2025-11-24 12:13:43] 2025-11-24 17:13:03,240 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 12:13:43] 2025-11-24 17:13:03,240 | INFO     | pilot state: finished 
[2025-11-24 12:13:43] 2025-11-24 17:13:03,240 | INFO     | transexitcode: 0
[2025-11-24 12:13:43] 2025-11-24 17:13:03,240 | INFO     | exeerrorcode: 0
[2025-11-24 12:13:43] 2025-11-24 17:13:03,240 | INFO     | exeerrordiag: 
[2025-11-24 12:13:43] 2025-11-24 17:13:03,240 | INFO     | exitcode: 0
[2025-11-24 12:13:43] 2025-11-24 17:13:03,241 | INFO     | exitmsg: OK
[2025-11-24 12:13:43] 2025-11-24 17:13:03,241 | INFO     | cpuconsumptiontime: 473508 s
[2025-11-24 12:13:43] 2025-11-24 17:13:03,241 | INFO     | nevents: 1000
[2025-11-24 12:13:43] 2025-11-24 17:13:03,241 | INFO     | neventsw: 0
[2025-11-24 12:13:43] 2025-11-24 17:13:03,241 | INFO     | pid: 9889
[2025-11-24 12:13:43] 2025-11-24 17:13:03,241 | INFO     | pgrp: 9889
[2025-11-24 12:13:43] 2025-11-24 17:13:03,241 | INFO     | corecount: 8
[2025-11-24 12:13:43] 2025-11-24 17:13:03,242 | INFO     | event service: False
[2025-11-24 12:13:43] 2025-11-24 17:13:03,242 | INFO     | sizes: {0: 2298580, 1: 2298835, 5: 2299097, 12: 2299153, 61483: 2351897, 61487: 2361866, 61494: 2362056}
[2025-11-24 12:13:43] 2025-11-24 17:13:03,242 | INFO     | --------------------------------------------------
[2025-11-24 12:13:43] 2025-11-24 17:13:03,242 | INFO     | 
[2025-11-24 12:13:43] 2025-11-24 17:13:03,242 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-24 12:13:43] 2025-11-24 17:13:03,261 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 12:13:43] 2025-11-24 17:13:03,261 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 12:13:43] 2025-11-24 17:13:03,261 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 12:13:43] 2025-11-24 17:13:03,261 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 12:13:43] 2025-11-24 17:13:03,262 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 12:13:43] 2025-11-24 17:13:03,262 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 12:13:43] 2025-11-24 17:13:03,262 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 12:13:43] 2025-11-24 17:13:03,262 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 12:13:43] 2025-11-24 17:13:03,262 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 12:13:43] 2025-11-24 17:13:03,262 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 12:13:43] 2025-11-24 17:13:03,263 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 12:13:43] 2025-11-24 17:13:03,263 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 12:13:43] 2025-11-24 17:13:03,263 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 12:13:43] 2025-11-24 17:13:03,263 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 12:13:43] 2025-11-24 17:13:03,263 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 12:13:43] 2025-11-24 17:13:03,263 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 12:13:43] 2025-11-24 17:13:03,264 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 12:13:43] 2025-11-24 17:13:03,264 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 12:13:43] 2025-11-24 17:13:03,264 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 12:13:43] 2025-11-24 17:13:03,264 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 12:13:43] 2025-11-24 17:13:03,264 | INFO     | job 6895353812 has completed (purged errors)
[2025-11-24 12:13:43] 2025-11-24 17:13:03,265 | INFO     | overall cleanup function is called
[2025-11-24 12:13:43] 2025-11-24 17:13:04,277 | INFO     | --- collectZombieJob: --- 10, [9889]
[2025-11-24 12:13:43] 2025-11-24 17:13:04,278 | INFO     | zombie collector waiting for pid 9889
[2025-11-24 12:13:43] 2025-11-24 17:13:04,278 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 12:13:43] 2025-11-24 17:13:04,278 | INFO     | collected zombie processes
[2025-11-24 12:13:43] 2025-11-24 17:13:04,278 | INFO     | will attempt to kill all subprocesses of pid=9889
[2025-11-24 12:13:43] 2025-11-24 17:13:04,601 | INFO     | process IDs to be killed: [9889] (in reverse order)
[2025-11-24 12:13:43] 2025-11-24 17:13:04,695 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 12:13:43] 2025-11-24 17:13:04,695 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 12:13:43] 2025-11-24 17:13:04,707 | INFO     | did not find any defunct processes belonging to 9889
[2025-11-24 12:13:43] 2025-11-24 17:13:04,717 | INFO     | did not find any defunct processes belonging to 9889
[2025-11-24 12:13:43] 2025-11-24 17:13:04,719 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 12:13:43] 2025-11-24 17:13:04,719 | INFO     | ready for new job
[2025-11-24 12:13:43] 2025-11-24 17:13:04,719 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 12:13:43] 2025-11-24 17:13:04,724 | INFO     | ***************************************
[2025-11-24 12:13:43] 2025-11-24 17:13:04,724 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 12:13:43] 2025-11-24 17:13:04,725 | INFO     | ***************************************
[2025-11-24 12:13:43] 2025-11-24 17:13:04,725 | INFO     | 
[2025-11-24 12:13:43] 2025-11-24 17:13:04,727 | INFO     | architecture information:
[2025-11-24 12:13:43] 2025-11-24 17:13:04,727 | INFO     | executing command: cat /etc/os-release
[2025-11-24 12:13:43] 2025-11-24 17:13:04,740 | INFO     | cat /etc/os-release:
[2025-11-24 12:13:43] NAME="CentOS Linux"
[2025-11-24 12:13:43] VERSION="7 (Core)"
[2025-11-24 12:13:43] ID="centos"
[2025-11-24 12:13:43] ID_LIKE="rhel fedora"
[2025-11-24 12:13:43] VERSION_ID="7"
[2025-11-24 12:13:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 12:13:43] ANSI_COLOR="0;31"
[2025-11-24 12:13:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 12:13:43] HOME_URL="https://www.centos.org/"
[2025-11-24 12:13:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 12:13:43] 
[2025-11-24 12:13:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 12:13:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 12:13:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 12:13:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 12:13:43] 
[2025-11-24 12:13:43] 2025-11-24 17:13:04,740 | INFO     | ***************************************
[2025-11-24 12:13:43] 2025-11-24 17:13:05,243 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-24 12:13:43] 2025-11-24 17:13:05,262 | INFO     | sufficient remaining disk space (100296294400 B)
[2025-11-24 12:13:43] 2025-11-24 17:13:05,262 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 12:13:43] 2025-11-24 17:13:05,262 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 12:13:43] 2025-11-24 17:13:05,262 | INFO     | update_server=False
[2025-11-24 12:13:43] 2025-11-24 17:13:05,263 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 12:13:43] 2025-11-24 17:13:05,263 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 12:13:43] 2025-11-24 17:13:05,270 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-24 12:13:43] 2025-11-24 17:13:05,270 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-24 12:13:43] 2025-11-24 17:13:05,271 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 12:13:43] 2025-11-24 17:13:05,271 | INFO     | will abort loop
[2025-11-24 12:13:43] 2025-11-24 17:13:05,859 | INFO     | all payload control threads have been joined
[2025-11-24 12:13:43] 2025-11-24 17:13:06,263 | INFO     | [job] retrieve thread has finished
[2025-11-24 12:13:43] 2025-11-24 17:13:06,276 | INFO     | [job] job monitor thread has finished
[2025-11-24 12:13:43] 2025-11-24 17:13:06,310 | INFO     | [payload] validate_post thread has finished
[2025-11-24 12:13:43] 2025-11-24 17:13:06,352 | INFO     | all data control threads have been joined
[2025-11-24 12:13:43] 2025-11-24 17:13:06,486 | INFO     | [job] validate thread has finished
[2025-11-24 12:13:43] 2025-11-24 17:13:06,719 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 12:13:43] 2025-11-24 17:13:06,762 | INFO     | all job control threads have been joined
[2025-11-24 12:13:43] 2025-11-24 17:13:06,768 | INFO     | [data] copytool_in thread has finished
[2025-11-24 12:13:43] 2025-11-24 17:13:06,865 | INFO     | [payload] control thread has finished
[2025-11-24 12:13:43] 2025-11-24 17:13:07,070 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 12:13:43] 2025-11-24 17:13:07,100 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 12:13:43] 2025-11-24 17:13:07,269 | INFO     | [data] copytool_out thread has finished
[2025-11-24 12:13:43] 2025-11-24 17:13:07,353 | INFO     | [data] control thread has finished
[2025-11-24 12:13:43] 2025-11-24 17:13:07,619 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 12:13:43] 2025-11-24 17:13:07,621 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 12:13:43] 2025-11-24 17:13:07,767 | INFO     | [job] control thread has finished
[2025-11-24 12:13:43] 2025-11-24 17:13:07,773 | INFO     | [payload] failed_post thread has finished
[2025-11-24 12:13:43] 2025-11-24 17:13:08,256 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 12:13:43] 2025-11-24 17:13:09,262 | INFO     | [job] queue monitor thread has finished
[2025-11-24 12:13:43] 2025-11-24 17:13:11,077 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 12:13:43] 2025-11-24 17:13:35,023 | INFO     | PID=1355 has CPU usage=9.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-24 12:13:43] 2025-11-24 17:13:35,023 | INFO     | .. there are 4 such processes running
[2025-11-24 12:13:43] 2025-11-24 17:13:35,024 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 12:13:43] 2025-11-24 17:13:35,024 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 12:13:43] 2025-11-24 17:13:35,025 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 12:13:43] 2025-11-24 17:13:37,201 | INFO     | [monitor] cgroup control has ended
[2025-11-24 12:13:43] 2025-11-24 17:13:38,610 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140018780297024)>', '<ExcThread(monitor, started 140018198763264)>']
[2025-11-24 12:13:43] 2025-11-24 17:13:39,046 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 12:13:43] 2025-11-24 17:13:39,047 | INFO     | [monitor] control thread has ended
[2025-11-24 12:13:43] 2025-11-24 17:13:43,634 | INFO     | all workflow threads have been joined
[2025-11-24 12:13:43] 2025-11-24 17:13:43,635 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 12:13:43] 2025-11-24 17:13:43,635 | INFO     | traces error code: 0
[2025-11-24 12:13:43] 2025-11-24 17:13:43,635 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 12:13:43] 2025-11-24 17:13:43,735 [wrapper] ==== pilot stdout END ====
[2025-11-24 12:13:43] 2025-11-24 17:13:43,737 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 12:13:43] 2025-11-24 17:13:43,739 [wrapper] pilotpid: 1355
[2025-11-24 12:13:43] 2025-11-24 17:13:43,741 [wrapper] Pilot exit status: 0
[2025-11-24 12:13:43] 2025-11-24 17:13:43,751 [wrapper] pandaids: 6895353812
[2025-11-24 12:13:43] 2025-11-24 17:13:43,797 [wrapper] cleanup supervisor_pilot 43703 1356
[2025-11-24 12:13:43] 2025-11-24 17:13:43,800 [wrapper] Test setup, not cleaning
[2025-11-24 12:13:43] 2025-11-24 17:13:43,802 [wrapper] apfmon messages muted
[2025-11-24 12:13:43] 2025-11-24 17:13:43,804 [wrapper] ==== wrapper stdout END ====
[2025-11-24 12:13:43] 2025-11-24 17:13:43,806 [wrapper] ==== wrapper stderr END ====
[2025-11-24 12:13:43]  *** Error codes and diagnostics ***
[2025-11-24 12:13:43]     "exeErrorCode": 0,
[2025-11-24 12:13:43]     "exeErrorDiag": "",
[2025-11-24 12:13:43]     "pilotErrorCode": 0,
[2025-11-24 12:13:43]     "pilotErrorDiag": "",
[2025-11-24 12:13:43]  *** Listing of results directory ***
[2025-11-24 12:13:43] total 1325028
[2025-11-24 12:13:43] -rw-r--r-- 1 boincer umatlas    576529 Nov 22 23:55 pilot3.tar.gz
[2025-11-24 12:13:43] -rwx------ 1 boincer umatlas     36292 Nov 23 00:12 runpilot2-wrapper.sh
[2025-11-24 12:13:43] -rw-r--r-- 1 boincer umatlas      5112 Nov 23 00:12 queuedata.json
[2025-11-24 12:13:43] -rw-r--r-- 1 boincer umatlas       100 Nov 23 19:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 12:13:43] -rwxr-xr-x 1 boincer umatlas      7986 Nov 23 19:07 run_atlas
[2025-11-24 12:13:43] -rw-r--r-- 1 boincer umatlas       105 Nov 23 19:07 job.xml
[2025-11-24 12:13:43] -rw-r--r-- 2 boincer umatlas 413175303 Nov 23 19:07 EVNT.47483658._000624.pool.root.1
[2025-11-24 12:13:43] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 19:07 start_atlas.sh
[2025-11-24 12:13:43] drwxrwx--x 2 boincer umatlas      4096 Nov 23 19:07 shared
[2025-11-24 12:13:43] -rw-r--r-- 2 boincer umatlas    590099 Nov 23 19:07 input.tar.gz
[2025-11-24 12:13:43] -rw-r--r-- 1 boincer umatlas         0 Nov 23 19:07 boinc_lockfile
[2025-11-24 12:13:43] -rw-r--r-- 1 boincer umatlas      2786 Nov 23 19:07 pandaJob.out
[2025-11-24 12:13:43] -rw------- 1 boincer umatlas        57 Nov 23 19:07 setup.sh.local
[2025-11-24 12:13:43] -rw------- 1 boincer umatlas    989786 Nov 23 19:07 agis_schedconf.cvmfs.json
[2025-11-24 12:13:43] drwx------ 5 boincer umatlas      4096 Nov 23 19:07 pilot3
[2025-11-24 12:13:43] -rw-r--r-- 1 boincer umatlas       533 Nov 24 11:59 boinc_task_state.xml
[2025-11-24 12:13:43] -rw-r--r-- 1 boincer umatlas      6037 Nov 24 12:09 init_data.xml
[2025-11-24 12:13:43] -rw------- 1 boincer umatlas 918623708 Nov 24 12:12 HITS.47556137._006200.pool.root.1
[2025-11-24 12:13:43] -rw------- 1 boincer umatlas      1061 Nov 24 12:12 memory_monitor_summary.json
[2025-11-24 12:13:43] -rw------- 1 boincer umatlas   1516227 Nov 24 12:12 agis_ddmendpoints.agis.ALL.json
[2025-11-24 12:13:43] -rw------- 1 boincer umatlas   2204534 Nov 24 12:12 log.47556137._006200.job.log.tgz.1
[2025-11-24 12:13:43] -rw------- 1 boincer umatlas      8647 Nov 24 12:13 heartbeat.json
[2025-11-24 12:13:43] -rw-r--r-- 1 boincer umatlas      8192 Nov 24 12:13 boinc_mmap_file
[2025-11-24 12:13:43] -rw-r--r-- 1 boincer umatlas        29 Nov 24 12:13 wrapper_checkpoint.txt
[2025-11-24 12:13:43] -rw------- 1 boincer umatlas        95 Nov 24 12:13 pilot_heartbeat.json
[2025-11-24 12:13:43] -rw------- 1 boincer umatlas      5007 Nov 24 12:13 pilotlog.txt
[2025-11-24 12:13:43] -rw------- 1 boincer umatlas   8349233 Nov 24 12:13 log.47556137._006200.job.log.1
[2025-11-24 12:13:43] -rw------- 1 boincer umatlas       353 Nov 24 12:13 output.list
[2025-11-24 12:13:43] -rw-r--r-- 1 boincer umatlas       620 Nov 24 12:13 runtime_log
[2025-11-24 12:13:43] -rw------- 1 boincer umatlas  10577920 Nov 24 12:13 result.tar.gz
[2025-11-24 12:13:43] -rw-r--r-- 1 boincer umatlas      9333 Nov 24 12:13 runtime_log.err
[2025-11-24 12:13:43] -rw------- 1 boincer umatlas       665 Nov 24 12:13 gewKDmhZHh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmkdKKDmbnPWJn.diag
[2025-11-24 12:13:43] -rw-r--r-- 1 boincer umatlas     21274 Nov 24 12:13 stderr.txt
[2025-11-24 12:13:43] HITS file was successfully produced:
[2025-11-24 12:13:43] -rw------- 1 boincer umatlas 918623708 Nov 24 12:12 shared/HITS.pool.root.1
[2025-11-24 12:13:43]  *** Contents of shared directory: ***
[2025-11-24 12:13:43] total 1311520
[2025-11-24 12:13:43] -rw-r--r-- 2 boincer umatlas 413175303 Nov 23 19:07 ATLAS.root_0
[2025-11-24 12:13:43] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 19:07 start_atlas.sh
[2025-11-24 12:13:43] -rw-r--r-- 2 boincer umatlas    590099 Nov 23 19:07 input.tar.gz
[2025-11-24 12:13:43] -rw------- 1 boincer umatlas 918623708 Nov 24 12:12 HITS.pool.root.1
[2025-11-24 12:13:43] -rw------- 1 boincer umatlas  10577920 Nov 24 12:13 result.tar.gz
12:13:45 (45406): run_atlas exited; CPU time 473949.048584
12:13:45 (45406): called boinc_finish(0)

</stderr_txt>
]]>

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