Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:25:17 (4188269): wrapper (7.7.26015): starting
08:25:17 (4188269): wrapper: running run_atlas (--nthreads 3)
[2025-11-27 08:25:17] Arguments: --nthreads 3
[2025-11-27 08:25:17] Threads: 3
[2025-11-27 08:25:17] Checking for CVMFS
[2025-11-27 08:25:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 08:25:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 08:25:17] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 08:25:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 08:25:18] 2.9.2.0 3991385 1460 63988 153352 3 81 31001883 36864001 0 130560 0 541274 99.982 54006 803 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-27 08:25:18] CVMFS is ok
[2025-11-27 08:25:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 08:25:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 08:25:18] Further information can be found at the LHC@home message board.
[2025-11-27 08:25:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 08:25:18] Checking for apptainer binary...
[2025-11-27 08:25:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 08:25:18] Running /usr/bin/apptainer --version
[2025-11-27 08:25:18] apptainer version 1.4.1-1.1
[2025-11-27 08:25:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 08:25:18] itA179
[2025-11-27 08:25:18] apptainer works
[2025-11-27 08:25:18] Set ATHENA_PROC_NUMBER=3
[2025-11-27 08:25:18] Set ATHENA_CORE_NUMBER=3
[2025-11-27 08:25:18] Starting ATLAS job with PandaID=6895353326
[2025-11-27 08:25:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
14:07:49 (42598): wrapper (7.7.26015): starting
14:07:49 (42598): wrapper: running run_atlas (--nthreads 3)
[2025-11-27 14:07:49] Arguments: --nthreads 3
[2025-11-27 14:07:49] Threads: 3
[2025-11-27 14:07:49] This job has been restarted, cleaning up previous attempt
[2025-11-27 14:07:49] Checking for CVMFS
[2025-11-27 14:07:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 14:07:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 14:07:50] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 14:07:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 14:07:50] 2.9.2.0 42724 0 30028 153364 4 1 31073373 36864001 0 130560 0 0 100.000 0 0 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-27 14:07:50] CVMFS is ok
[2025-11-27 14:07:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 14:07:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 14:07:50] Further information can be found at the LHC@home message board.
[2025-11-27 14:07:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 14:07:50] Checking for apptainer binary...
[2025-11-27 14:07:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 14:07:50] Running /usr/bin/apptainer --version
[2025-11-27 14:07:50] apptainer version 1.4.1-1.1
[2025-11-27 14:07:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 14:07:50] itA179
[2025-11-27 14:07:50] apptainer works
[2025-11-27 14:07:50] Set ATHENA_PROC_NUMBER=3
[2025-11-27 14:07:50] Set ATHENA_CORE_NUMBER=3
[2025-11-27 14:07:50] Starting ATLAS job with PandaID=6895353326
[2025-11-27 14:07:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 22:13:37]  *** The last 200 lines of the pilot log: ***
[2025-11-27 22:13:37] 2025-11-27 21:12:28,294 | INFO     | time since job start (29070s) is within the limit (172800.0s)
[2025-11-27 22:13:37] 2025-11-27 21:12:28,369 | INFO     | monitor loop #2215: job 0:6895353326 is in state 'finished'
[2025-11-27 22:13:37] 2025-11-27 21:12:28,370 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:13:37] 2025-11-27 21:12:28,540 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 22:13:37] 2025-11-27 21:12:28,541 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 3751.634083333333
[2025-11-27 22:13:37] 2025-11-27 21:12:28,542 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6895353326/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 22:13:37] 2025-11-27 21:12:28,542 | INFO     | extracted standard info from prmon json
[2025-11-27 22:13:37] 2025-11-27 21:12:28,542 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 22:13:37] 2025-11-27 21:12:28,542 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 22:13:37] 2025-11-27 21:12:28,545 | INFO     | fitting pss+swap vs Time
[2025-11-27 22:13:37] 2025-11-27 21:12:28,545 | INFO     | sum of square deviations: 33653609598.0
[2025-11-27 22:13:37] 2025-11-27 21:12:28,547 | INFO     | sum of deviations: 204950813034.00006
[2025-11-27 22:13:37] 2025-11-27 21:12:28,547 | INFO     | mean x: 1764263415.0
[2025-11-27 22:13:37] 2025-11-27 21:12:28,547 | INFO     | mean y: 2203488.6624737945
[2025-11-27 22:13:37] 2025-11-27 21:12:28,547 | INFO     | intersect: -10742178039.192423
[2025-11-27 22:13:37] 2025-11-27 21:12:28,548 | INFO     | chi2: 4.044965550198345
[2025-11-27 22:13:37] 2025-11-27 21:12:28,548 | INFO     | sum of square deviations: 32606371358.0
[2025-11-27 22:13:37] 2025-11-27 21:12:28,549 | INFO     | sum of deviations: 277842450927.49994
[2025-11-27 22:13:37] 2025-11-27 21:12:28,549 | INFO     | mean x: 1764263262.5
[2025-11-27 22:13:37] 2025-11-27 21:12:28,550 | INFO     | mean y: 2214055.9512711866
[2025-11-27 22:13:37] 2025-11-27 21:12:28,550 | INFO     | intersect: -15031265859.748682
[2025-11-27 22:13:37] 2025-11-27 21:12:28,550 | INFO     | chi2: 2.2546624693867736
[2025-11-27 22:13:37] 2025-11-27 21:12:28,550 | INFO     | current chi2=2.2546624693867736 (change=44.26003283819769 %)
[2025-11-27 22:13:37] 2025-11-27 21:12:28,550 | INFO     | sum of square deviations: 31581087018.0
[2025-11-27 22:13:37] 2025-11-27 21:12:28,552 | INFO     | sum of deviations: 271689158185.99997
[2025-11-27 22:13:37] 2025-11-27 21:12:28,552 | INFO     | mean x: 1764263110.0
[2025-11-27 22:13:37] 2025-11-27 21:12:28,552 | INFO     | mean y: 2213140.7537473235
[2025-11-27 22:13:37] 2025-11-27 21:12:28,552 | INFO     | intersect: -15175578519.847233
[2025-11-27 22:13:37] 2025-11-27 21:12:28,552 | INFO     | chi2: 2.254592255934403
[2025-11-27 22:13:37] 2025-11-27 21:12:28,552 | INFO     | current chi2=2.254592255934403 (change=0.0031141447255986308 %)
[2025-11-27 22:13:37] 2025-11-27 21:12:28,552 | INFO     | right removable region: 466
[2025-11-27 22:13:37] 2025-11-27 21:12:28,552 | INFO     | sum of square deviations: 32606371358.0
[2025-11-27 22:13:37] 2025-11-27 21:12:28,554 | INFO     | sum of deviations: 106502916450.00003
[2025-11-27 22:13:37] 2025-11-27 21:12:28,554 | INFO     | mean x: 1764263567.5
[2025-11-27 22:13:37] 2025-11-27 21:12:28,554 | INFO     | mean y: 2217803.3898305083
[2025-11-27 22:13:37] 2025-11-27 21:12:28,554 | INFO     | intersect: -5760435552.3669815
[2025-11-27 22:13:37] 2025-11-27 21:12:28,554 | INFO     | chi2: 2.0197016126796097
[2025-11-27 22:13:37] 2025-11-27 21:12:28,554 | INFO     | current chi2=2.0197016126796097 (change=50.06875614600541 %)
[2025-11-27 22:13:37] 2025-11-27 21:12:28,555 | INFO     | sum of square deviations: 31581087018.0
[2025-11-27 22:13:37] 2025-11-27 21:12:28,557 | INFO     | sum of deviations: 83408739362.99998
[2025-11-27 22:13:37] 2025-11-27 21:12:28,557 | INFO     | mean x: 1764263720.0
[2025-11-27 22:13:37] 2025-11-27 21:12:28,557 | INFO     | mean y: 2221223.9036402567
[2025-11-27 22:13:37] 2025-11-27 21:12:28,557 | INFO     | intersect: -4657371801.035752
[2025-11-27 22:13:37] 2025-11-27 21:12:28,557 | INFO     | chi2: 1.8614421867889357
[2025-11-27 22:13:37] 2025-11-27 21:12:28,557 | INFO     | current chi2=1.8614421867889357 (change=7.835782518423877 %)
[2025-11-27 22:13:37] 2025-11-27 21:12:28,557 | INFO     | left removable region: 20
[2025-11-27 22:13:37] 2025-11-27 21:12:28,557 | INFO     | sum of square deviations: 27509380907.5
[2025-11-27 22:13:37] 2025-11-27 21:12:28,559 | INFO     | sum of deviations: 134754156878.99998
[2025-11-27 22:13:37] 2025-11-27 21:12:28,559 | INFO     | mean x: 1764263689.5
[2025-11-27 22:13:37] 2025-11-27 21:12:28,559 | INFO     | mean y: 2233831.8295964124
[2025-11-27 22:13:37] 2025-11-27 21:12:28,559 | INFO     | intersect: -8639976866.775757
[2025-11-27 22:13:37] 2025-11-27 21:12:28,559 | INFO     | chi2: 0.047122240948919245
[2025-11-27 22:13:37] 2025-11-27 21:12:28,559 | INFO     | current memory leak: 4.90 B/s (using 446 data points, chi2=0.05)
[2025-11-27 22:13:37] 2025-11-27 21:12:28,559 | INFO     | could have reported an average CPU frequency of 3935 MHz (20 samples)
[2025-11-27 22:13:37] 2025-11-27 21:12:28,559 | INFO     | ..............................
[2025-11-27 22:13:37] 2025-11-27 21:12:28,559 | INFO     | . Timing measurements:
[2025-11-27 22:13:37] 2025-11-27 21:12:28,559 | INFO     | . get job = 0 s
[2025-11-27 22:13:37] 2025-11-27 21:12:28,559 | INFO     | . initial setup = 1 s
[2025-11-27 22:13:37] 2025-11-27 21:12:28,559 | INFO     | . payload setup = 3 s
[2025-11-27 22:13:37] 2025-11-27 21:12:28,559 | INFO     | . stage-in = 0 s
[2025-11-27 22:13:37] 2025-11-27 21:12:28,559 | INFO     | . payload execution = 29045 s
[2025-11-27 22:13:37] 2025-11-27 21:12:28,559 | INFO     | . stage-out = 1 s
[2025-11-27 22:13:37] 2025-11-27 21:12:28,559 | INFO     | . log creation = 0 s
[2025-11-27 22:13:37] 2025-11-27 21:12:28,559 | INFO     | ..............................
[2025-11-27 22:13:37] 2025-11-27 21:12:28,589 | INFO     | 
[2025-11-27 22:13:37] 2025-11-27 21:12:28,589 | INFO     | job summary report
[2025-11-27 22:13:37] 2025-11-27 21:12:28,590 | INFO     | --------------------------------------------------
[2025-11-27 22:13:37] 2025-11-27 21:12:28,590 | INFO     | PanDA job id: 6895353326
[2025-11-27 22:13:37] 2025-11-27 21:12:28,590 | INFO     | task id: 47556137
[2025-11-27 22:13:37] 2025-11-27 21:12:28,590 | INFO     | errors: (none)
[2025-11-27 22:13:37] 2025-11-27 21:12:28,590 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 22:13:37] 2025-11-27 21:12:28,590 | INFO     | pilot state: finished 
[2025-11-27 22:13:37] 2025-11-27 21:12:28,590 | INFO     | transexitcode: 0
[2025-11-27 22:13:37] 2025-11-27 21:12:28,590 | INFO     | exeerrorcode: 0
[2025-11-27 22:13:37] 2025-11-27 21:12:28,590 | INFO     | exeerrordiag: 
[2025-11-27 22:13:37] 2025-11-27 21:12:28,590 | INFO     | exitcode: 0
[2025-11-27 22:13:37] 2025-11-27 21:12:28,590 | INFO     | exitmsg: OK
[2025-11-27 22:13:37] 2025-11-27 21:12:28,590 | INFO     | cpuconsumptiontime: 85818 s
[2025-11-27 22:13:37] 2025-11-27 21:12:28,590 | INFO     | nevents: 1000
[2025-11-27 22:13:37] 2025-11-27 21:12:28,590 | INFO     | neventsw: 0
[2025-11-27 22:13:37] 2025-11-27 21:12:28,590 | INFO     | pid: 53246
[2025-11-27 22:13:37] 2025-11-27 21:12:28,590 | INFO     | pgrp: 53246
[2025-11-27 22:13:37] 2025-11-27 21:12:28,590 | INFO     | corecount: 3
[2025-11-27 22:13:37] 2025-11-27 21:12:28,590 | INFO     | event service: False
[2025-11-27 22:13:37] 2025-11-27 21:12:28,590 | INFO     | sizes: {0: 2284318, 3: 2284580, 11: 2284608, 29052: 2323623, 29053: 2332623, 29055: 2332679, 29057: 2333053}
[2025-11-27 22:13:37] 2025-11-27 21:12:28,590 | INFO     | --------------------------------------------------
[2025-11-27 22:13:37] 2025-11-27 21:12:28,590 | INFO     | 
[2025-11-27 22:13:37] 2025-11-27 21:12:28,590 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-11-27 22:13:37] 2025-11-27 21:12:28,601 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 22:13:37] 2025-11-27 21:12:28,602 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 22:13:37] 2025-11-27 21:12:28,602 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 22:13:37] 2025-11-27 21:12:28,602 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 22:13:37] 2025-11-27 21:12:28,602 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 22:13:37] 2025-11-27 21:12:28,602 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 22:13:37] 2025-11-27 21:12:28,602 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 22:13:37] 2025-11-27 21:12:28,602 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 22:13:37] 2025-11-27 21:12:28,602 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 22:13:37] 2025-11-27 21:12:28,602 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 22:13:37] 2025-11-27 21:12:28,602 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 22:13:37] 2025-11-27 21:12:28,602 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 22:13:37] 2025-11-27 21:12:28,602 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 22:13:37] 2025-11-27 21:12:28,602 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 22:13:37] 2025-11-27 21:12:28,602 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 22:13:37] 2025-11-27 21:12:28,602 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 22:13:37] 2025-11-27 21:12:28,602 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 22:13:37] 2025-11-27 21:12:28,602 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 22:13:37] 2025-11-27 21:12:28,602 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 22:13:37] 2025-11-27 21:12:28,602 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 22:13:37] 2025-11-27 21:12:28,602 | INFO     | job 6895353326 has completed (purged errors)
[2025-11-27 22:13:37] 2025-11-27 21:12:28,602 | INFO     | overall cleanup function is called
[2025-11-27 22:13:37] 2025-11-27 21:12:29,607 | INFO     | --- collectZombieJob: --- 10, [53246]
[2025-11-27 22:13:37] 2025-11-27 21:12:29,608 | INFO     | zombie collector waiting for pid 53246
[2025-11-27 22:13:37] 2025-11-27 21:12:29,608 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 22:13:37] 2025-11-27 21:12:29,608 | INFO     | collected zombie processes
[2025-11-27 22:13:37] 2025-11-27 21:12:29,608 | INFO     | will attempt to kill all subprocesses of pid=53246
[2025-11-27 22:13:37] 2025-11-27 21:12:29,652 | INFO     | process IDs to be killed: [53246] (in reverse order)
[2025-11-27 22:13:37] 2025-11-27 21:12:29,675 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 22:13:37] 2025-11-27 21:12:29,676 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 22:13:37] 2025-11-27 21:12:29,677 | INFO     | did not find any defunct processes belonging to 53246
[2025-11-27 22:13:37] 2025-11-27 21:12:29,678 | INFO     | did not find any defunct processes belonging to 53246
[2025-11-27 22:13:37] 2025-11-27 21:12:29,679 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 22:13:37] 2025-11-27 21:12:29,679 | INFO     | ready for new job
[2025-11-27 22:13:37] 2025-11-27 21:12:29,679 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 22:13:37] 2025-11-27 21:12:29,680 | INFO     | ***************************************
[2025-11-27 22:13:37] 2025-11-27 21:12:29,680 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 22:13:37] 2025-11-27 21:12:29,680 | INFO     | ***************************************
[2025-11-27 22:13:37] 2025-11-27 21:12:29,680 | INFO     | 
[2025-11-27 22:13:37] 2025-11-27 21:12:29,680 | INFO     | architecture information:
[2025-11-27 22:13:37] 2025-11-27 21:12:29,680 | INFO     | executing command: cat /etc/os-release
[2025-11-27 22:13:37] 2025-11-27 21:12:29,689 | INFO     | cat /etc/os-release:
[2025-11-27 22:13:37] NAME="CentOS Linux"
[2025-11-27 22:13:37] VERSION="7 (Core)"
[2025-11-27 22:13:37] ID="centos"
[2025-11-27 22:13:37] ID_LIKE="rhel fedora"
[2025-11-27 22:13:37] VERSION_ID="7"
[2025-11-27 22:13:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 22:13:37] ANSI_COLOR="0;31"
[2025-11-27 22:13:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 22:13:37] HOME_URL="https://www.centos.org/"
[2025-11-27 22:13:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 22:13:37] 
[2025-11-27 22:13:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 22:13:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 22:13:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 22:13:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 22:13:37] 
[2025-11-27 22:13:37] 2025-11-27 21:12:29,689 | INFO     | ***************************************
[2025-11-27 22:13:37] 2025-11-27 21:12:30,192 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-27 22:13:37] 2025-11-27 21:12:30,203 | INFO     | sufficient remaining disk space (125863723008 B)
[2025-11-27 22:13:37] 2025-11-27 21:12:30,204 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 22:13:37] 2025-11-27 21:12:30,204 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 22:13:37] 2025-11-27 21:12:30,204 | INFO     | update_server=False
[2025-11-27 22:13:37] 2025-11-27 21:12:30,204 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 22:13:37] 2025-11-27 21:12:30,204 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 22:13:37] 2025-11-27 21:12:30,204 | INFO     | aborting loop
[2025-11-27 22:13:37] 2025-11-27 21:12:30,204 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 22:13:37] 2025-11-27 21:12:30,204 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 22:13:37] 2025-11-27 21:12:30,204 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-27 22:13:37] 2025-11-27 21:12:30,205 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 22:13:37] 2025-11-27 21:12:30,205 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 22:13:37] 2025-11-27 21:12:30,205 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 22:13:37] 2025-11-27 21:12:30,598 | INFO     | all job control threads have been joined
[2025-11-27 22:13:37] 2025-11-27 21:12:30,598 | INFO     | all data control threads have been joined
[2025-11-27 22:13:37] 2025-11-27 21:12:31,209 | INFO     | [job] retrieve thread has finished
[2025-11-27 22:13:37] 2025-11-27 21:12:31,210 | INFO     | [job] job monitor thread has finished
[2025-11-27 22:13:37] 2025-11-27 21:12:31,210 | INFO     | [job] queue monitor thread has finished
[2025-11-27 22:13:37] 2025-11-27 21:12:31,419 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 22:13:37] 2025-11-27 21:12:31,604 | INFO     | [data] control thread has finished
[2025-11-27 22:13:37] 2025-11-27 21:12:31,604 | INFO     | all payload control threads have been joined
[2025-11-27 22:13:37] 2025-11-27 21:12:31,604 | INFO     | [job] control thread has finished
[2025-11-27 22:13:37] 2025-11-27 21:12:31,885 | INFO     | [payload] failed_post thread has finished
[2025-11-27 22:13:37] 2025-11-27 21:12:32,073 | INFO     | [data] copytool_in thread has finished
[2025-11-27 22:13:37] 2025-11-27 21:12:32,210 | INFO     | [data] copytool_out thread has finished
[2025-11-27 22:13:37] 2025-11-27 21:12:32,279 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 22:13:37] 2025-11-27 21:12:32,292 | INFO     | [job] validate thread has finished
[2025-11-27 22:13:37] 2025-11-27 21:12:32,368 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 22:13:37] 2025-11-27 21:12:32,457 | INFO     | [payload] validate_post thread has finished
[2025-11-27 22:13:37] 2025-11-27 21:12:32,584 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 22:13:37] 2025-11-27 21:12:32,610 | INFO     | [payload] control thread has finished
[2025-11-27 22:13:37] 2025-11-27 21:12:36,286 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 22:13:37] 2025-11-27 21:12:40,446 | INFO     | job.realtimelogging is not enabled
[2025-11-27 22:13:37] 2025-11-27 21:12:41,452 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 22:13:37] 2025-11-27 21:13:30,002 | INFO     | [monitor] cgroup control has ended
[2025-11-27 22:13:37] 2025-11-27 21:13:32,073 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140446769174336)>', '<ExcThread(monitor, started 140446286206720)>']
[2025-11-27 22:13:37] 2025-11-27 21:13:32,529 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 22:13:37] 2025-11-27 21:13:32,529 | INFO     | [monitor] control thread has ended
[2025-11-27 22:13:37] 2025-11-27 21:13:37,074 | INFO     | all workflow threads have been joined
[2025-11-27 22:13:37] 2025-11-27 21:13:37,074 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 22:13:37] 2025-11-27 21:13:37,074 | INFO     | traces error code: 0
[2025-11-27 22:13:37] 2025-11-27 21:13:37,074 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 22:13:37] 2025-11-27 21:13:37,125 [wrapper] ==== pilot stdout END ====
[2025-11-27 22:13:37] 2025-11-27 21:13:37,127 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 22:13:37] 2025-11-27 21:13:37,129 [wrapper] pilotpid: 46799
[2025-11-27 22:13:37] 2025-11-27 21:13:37,132 [wrapper] Pilot exit status: 0
[2025-11-27 22:13:37] 2025-11-27 21:13:37,139 [wrapper] pandaids: 6895353326 6895353326
[2025-11-27 22:13:37] 2025-11-27 21:13:37,156 [wrapper] cleanup supervisor_pilot  105564 46800
[2025-11-27 22:13:37] 2025-11-27 21:13:37,158 [wrapper] Test setup, not cleaning
[2025-11-27 22:13:37] 2025-11-27 21:13:37,160 [wrapper] apfmon messages muted
[2025-11-27 22:13:37] 2025-11-27 21:13:37,163 [wrapper] ==== wrapper stdout END ====
[2025-11-27 22:13:37] 2025-11-27 21:13:37,165 [wrapper] ==== wrapper stderr END ====
[2025-11-27 22:13:37]  *** Error codes and diagnostics ***
[2025-11-27 22:13:37]     "exeErrorCode": 0,
[2025-11-27 22:13:37]     "exeErrorDiag": "",
[2025-11-27 22:13:37]     "pilotErrorCode": 0,
[2025-11-27 22:13:37]     "pilotErrorDiag": "",
[2025-11-27 22:13:37]  *** Listing of results directory ***
[2025-11-27 22:13:37] total 1706624
[2025-11-27 22:13:37] drwx------ 5 boinc boinc      4096 Nov  5 18:16 pilot3
[2025-11-27 22:13:37] -rw-r--r-- 1 boinc boinc    576529 Nov 23 05:55 pilot3.tar.gz
[2025-11-27 22:13:37] -rw-r--r-- 1 boinc boinc      5112 Nov 23 06:07 queuedata.json
[2025-11-27 22:13:37] -rwx------ 1 boinc boinc     36292 Nov 23 06:09 runpilot2-wrapper.sh
[2025-11-27 22:13:37] -rw-r--r-- 1 boinc boinc       100 Nov 27 08:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 22:13:37] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 08:25 run_atlas
[2025-11-27 22:13:37] -rw-r--r-- 1 boinc boinc       105 Nov 27 08:25 job.xml
[2025-11-27 22:13:37] -rw-r--r-- 3 boinc boinc 408993079 Nov 27 08:25 EVNT.47483658._000615.pool.root.1
[2025-11-27 22:13:37] -rw-r--r-- 3 boinc boinc 408993079 Nov 27 08:25 ATLAS.root_0
[2025-11-27 22:13:37] -rw-r--r-- 2 boinc boinc    590101 Nov 27 08:25 input.tar.gz
[2025-11-27 22:13:37] -rw-r--r-- 2 boinc boinc     15847 Nov 27 08:25 start_atlas.sh
[2025-11-27 22:13:37] drwxrwx--x 2 boinc boinc      4096 Nov 27 08:25 shared
[2025-11-27 22:13:37] -rw-r--r-- 1 boinc boinc         0 Nov 27 08:25 boinc_setup_complete
[2025-11-27 22:13:37] -rw-r--r-- 1 boinc boinc         0 Nov 27 08:25 boinc_lockfile
[2025-11-27 22:13:37] -rw-r--r-- 1 boinc boinc      6450 Nov 27 14:07 init_data.xml
[2025-11-27 22:13:37] -rw-r--r-- 1 boinc boinc      2786 Nov 27 14:07 pandaJob.out
[2025-11-27 22:13:37] -rw------- 1 boinc boinc    991566 Nov 27 14:07 agis_schedconf.cvmfs.json
[2025-11-27 22:13:37] -rw-r--r-- 1 boinc boinc       532 Nov 27 22:08 boinc_task_state.xml
[2025-11-27 22:13:37] -rw------- 1 boinc boinc 915167972 Nov 27 22:12 HITS.47556137._006107.pool.root.1
[2025-11-27 22:13:37] -rw------- 1 boinc boinc      1028 Nov 27 22:12 memory_monitor_summary.json
[2025-11-27 22:13:37] -rw------- 1 boinc boinc   1516240 Nov 27 22:12 agis_ddmendpoints.agis.ALL.json
[2025-11-27 22:13:37] -rw------- 1 boinc boinc   1169997 Nov 27 22:12 log.47556137._006107.job.log.tgz.1
[2025-11-27 22:13:37] -rw------- 1 boinc boinc        96 Nov 27 22:12 pilot_heartbeat.json
[2025-11-27 22:13:37] -rw------- 1 boinc boinc      8568 Nov 27 22:12 heartbeat.json
[2025-11-27 22:13:37] -rw-r--r-- 1 boinc boinc      8192 Nov 27 22:13 boinc_mmap_file
[2025-11-27 22:13:37] -rw-r--r-- 1 boinc boinc        29 Nov 27 22:13 wrapper_checkpoint.txt
[2025-11-27 22:13:37] -rw------- 1 boinc boinc      4628 Nov 27 22:13 pilotlog.txt
[2025-11-27 22:13:37] -rw------- 1 boinc boinc   4081786 Nov 27 22:13 log.47556137._006107.job.log.1
[2025-11-27 22:13:37] -rw------- 1 boinc boinc       353 Nov 27 22:13 output.list
[2025-11-27 22:13:37] -rw-r--r-- 1 boinc boinc       620 Nov 27 22:13 runtime_log
[2025-11-27 22:13:37] -rw------- 1 boinc boinc   5273600 Nov 27 22:13 result.tar.gz
[2025-11-27 22:13:37] -rw-r--r-- 1 boinc boinc      8983 Nov 27 22:13 runtime_log.err
[2025-11-27 22:13:37] -rw------- 1 boinc boinc       790 Nov 27 22:13 13LMDmeWHh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmtcKKDmzPn3zm.diag
[2025-11-27 22:13:37] -rw-r--r-- 1 boinc boinc     23261 Nov 27 22:13 stderr.txt
[2025-11-27 22:13:37] HITS file was successfully produced:
[2025-11-27 22:13:37] -rw------- 1 boinc boinc 915167972 Nov 27 22:12 shared/HITS.pool.root.1
[2025-11-27 22:13:37]  *** Contents of shared directory: ***
[2025-11-27 22:13:37] total 1298884
[2025-11-27 22:13:37] -rw-r--r-- 3 boinc boinc 408993079 Nov 27 08:25 ATLAS.root_0
[2025-11-27 22:13:37] -rw-r--r-- 2 boinc boinc    590101 Nov 27 08:25 input.tar.gz
[2025-11-27 22:13:37] -rw-r--r-- 2 boinc boinc     15847 Nov 27 08:25 start_atlas.sh
[2025-11-27 22:13:37] -rw------- 1 boinc boinc 915167972 Nov 27 22:12 HITS.pool.root.1
[2025-11-27 22:13:37] -rw------- 1 boinc boinc   5273600 Nov 27 22:13 result.tar.gz
22:13:38 (42598): run_atlas exited; CPU time 85854.974888
22:13:38 (42598): called boinc_finish(0)

</stderr_txt>
]]>

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