Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:58:35 (217441): wrapper (7.7.26015): starting
00:58:35 (217441): wrapper: running run_atlas (--nthreads 3)
[2025-11-24 00:58:35] Arguments: --nthreads 3
[2025-11-24 00:58:35] Threads: 3
[2025-11-24 00:58:35] Checking for CVMFS
[2025-11-24 00:58:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:58:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:58:35] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:58:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:58:35] 2.9.2.0 154488 13 50376 153226 2 88 34926532 36864001 0 130560 0 187837 100.000 2 2 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-24 00:58:35] CVMFS is ok
[2025-11-24 00:58:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 00:58:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 00:58:35] Further information can be found at the LHC@home message board.
[2025-11-24 00:58:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:58:35] Checking for apptainer binary...
[2025-11-24 00:58:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:58:35] Running /usr/bin/apptainer --version
[2025-11-24 00:58:35] apptainer version 1.4.1-1.1
[2025-11-24 00:58:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:58:35] thA335
[2025-11-24 00:58:35] apptainer works
[2025-11-24 00:58:35] Set ATHENA_PROC_NUMBER=3
[2025-11-24 00:58:35] Set ATHENA_CORE_NUMBER=3
[2025-11-24 00:58:35] Starting ATLAS job with PandaID=6895345550
[2025-11-24 00:58:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 01:02:53]  *** The last 200 lines of the pilot log: ***
[2025-11-24 01:02:53] 2025-11-24 00:01:56,593 | INFO     | ***************************************
[2025-11-24 01:02:53] 2025-11-24 00:01:56,594 | INFO     | 
[2025-11-24 01:02:53] 2025-11-24 00:01:56,594 | INFO     | architecture information:
[2025-11-24 01:02:53] 2025-11-24 00:01:56,594 | INFO     | executing command: cat /etc/os-release
[2025-11-24 01:02:53] 2025-11-24 00:01:56,604 | INFO     | cat /etc/os-release:
[2025-11-24 01:02:53] NAME="CentOS Linux"
[2025-11-24 01:02:53] VERSION="7 (Core)"
[2025-11-24 01:02:53] ID="centos"
[2025-11-24 01:02:53] ID_LIKE="rhel fedora"
[2025-11-24 01:02:53] VERSION_ID="7"
[2025-11-24 01:02:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 01:02:53] ANSI_COLOR="0;31"
[2025-11-24 01:02:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 01:02:53] HOME_URL="https://www.centos.org/"
[2025-11-24 01:02:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 01:02:53] 
[2025-11-24 01:02:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 01:02:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 01:02:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 01:02:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 01:02:53] 
[2025-11-24 01:02:53] 2025-11-24 00:01:56,605 | INFO     | ***************************************
[2025-11-24 01:02:53] 2025-11-24 00:01:57,108 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-24 01:02:53] 2025-11-24 00:01:57,128 | INFO     | sufficient remaining disk space (826702561280 B)
[2025-11-24 01:02:53] 2025-11-24 00:01:57,128 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 01:02:53] 2025-11-24 00:01:57,128 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 01:02:53] 2025-11-24 00:01:57,128 | INFO     | update_server=False
[2025-11-24 01:02:53] 2025-11-24 00:01:57,128 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 01:02:53] 2025-11-24 00:01:57,128 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 01:02:53] 2025-11-24 00:01:57,129 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 01:02:53] 2025-11-24 00:01:57,129 | INFO     | aborting loop
[2025-11-24 01:02:53] 2025-11-24 00:01:57,129 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 01:02:53] 2025-11-24 00:01:58,134 | INFO     | [job] queue monitor thread has finished
[2025-11-24 01:02:53] 2025-11-24 00:01:58,135 | INFO     | [job] retrieve thread has finished
[2025-11-24 01:02:53] 2025-11-24 00:01:58,135 | INFO     | [job] job monitor thread has finished
[2025-11-24 01:02:53] 2025-11-24 00:01:58,171 | INFO     | all data control threads have been joined
[2025-11-24 01:02:53] 2025-11-24 00:01:58,220 | INFO     | [data] copytool_in thread has finished
[2025-11-24 01:02:53] 2025-11-24 00:01:58,331 | INFO     | all job control threads have been joined
[2025-11-24 01:02:53] 2025-11-24 00:01:58,375 | INFO     | all payload control threads have been joined
[2025-11-24 01:02:53] 2025-11-24 00:01:58,463 | INFO     | [payload] failed_post thread has finished
[2025-11-24 01:02:53] 2025-11-24 00:01:58,687 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 01:02:53] 2025-11-24 00:01:58,726 | INFO     | [payload] validate_post thread has finished
[2025-11-24 01:02:53] 2025-11-24 00:01:59,135 | INFO     | [data] copytool_out thread has finished
[2025-11-24 01:02:53] 2025-11-24 00:01:59,177 | INFO     | [data] control thread has finished
[2025-11-24 01:02:53] 2025-11-24 00:01:59,337 | INFO     | [job] control thread has finished
[2025-11-24 01:02:53] 2025-11-24 00:01:59,381 | INFO     | [payload] control thread has finished
[2025-11-24 01:02:53] 2025-11-24 00:01:59,408 | INFO     | [job] validate thread has finished
[2025-11-24 01:02:53] 2025-11-24 00:01:59,489 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 01:02:53] 2025-11-24 00:01:59,494 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 01:02:53] 2025-11-24 00:01:59,539 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 01:02:53] 2025-11-24 00:02:00,131 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 01:02:53] 2025-11-24 00:02:04,139 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 01:02:53] 2025-11-24 00:02:28,125 | INFO     | PID=221175 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-24 01:02:53] 2025-11-24 00:02:28,125 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 01:02:53] 2025-11-24 00:02:28,126 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 01:02:53] 2025-11-24 00:02:28,126 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 01:02:53] 2025-11-24 00:02:47,212 | INFO     | [monitor] cgroup control has ended
[2025-11-24 01:02:53] 2025-11-24 00:02:47,967 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140310545876800)>', '<ExcThread(monitor, started 140310055212800)>']
[2025-11-24 01:02:53] 2025-11-24 00:02:48,232 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 01:02:53] 2025-11-24 00:02:48,233 | INFO     | [monitor] control thread has ended
[2025-11-24 01:02:53] 2025-11-24 00:02:52,992 | INFO     | all workflow threads have been joined
[2025-11-24 01:02:53] 2025-11-24 00:02:52,992 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 01:02:53] 2025-11-24 00:02:52,993 | INFO     | traces error code: 0
[2025-11-24 01:02:53] 2025-11-24 00:02:52,993 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 01:02:53] 2025-11-24 00:02:53,041 [wrapper] ==== pilot stdout END ====
[2025-11-24 01:02:53] 2025-11-24 00:02:53,044 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 01:02:53] 2025-11-24 00:02:53,046 [wrapper] pilotpid: 221175
[2025-11-24 01:02:53] 2025-11-24 00:02:53,049 [wrapper] Pilot exit status: 0
[2025-11-24 01:02:53] 2025-11-24 00:02:53,056 [wrapper] pandaids: 6895345550
[2025-11-24 01:02:53] 2025-11-24 00:02:53,072 [wrapper] cleanup supervisor_pilot  221181 221176
[2025-11-24 01:02:53] 2025-11-24 00:02:53,074 [wrapper] Test setup, not cleaning
[2025-11-24 01:02:53] 2025-11-24 00:02:53,077 [wrapper] apfmon messages muted
[2025-11-24 01:02:53] 2025-11-24 00:02:53,079 [wrapper] ==== wrapper stdout END ====
[2025-11-24 01:02:53] 2025-11-24 00:02:53,082 [wrapper] ==== wrapper stderr END ====
[2025-11-24 01:02:53]  *** Error codes and diagnostics ***
[2025-11-24 01:02:53]     "exeErrorCode": 65,
[2025-11-24 01:02:53]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-24 01:02:53]     "pilotErrorCode": 1305,
[2025-11-24 01:02:53]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-24 01:02:53]  *** Listing of results directory ***
[2025-11-24 01:02:53] total 404844
[2025-11-24 01:02:53] -rw-r--r-- 1 boinc boinc    576529 Nov 22 18:17 pilot3.tar.gz
[2025-11-24 01:02:53] -rw-r--r-- 1 boinc boinc      5112 Nov 22 18:40 queuedata.json
[2025-11-24 01:02:53] -rwx------ 1 boinc boinc     36292 Nov 22 18:41 runpilot2-wrapper.sh
[2025-11-24 01:02:53] -rw-r--r-- 1 boinc boinc       100 Nov 24 00:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 01:02:53] -rwxr-xr-x 1 boinc boinc      7986 Nov 24 00:58 run_atlas
[2025-11-24 01:02:53] -rw-r--r-- 1 boinc boinc       105 Nov 24 00:58 job.xml
[2025-11-24 01:02:53] -rw-r--r-- 2 boinc boinc 410363180 Nov 24 00:58 EVNT.47483658._001104.pool.root.1
[2025-11-24 01:02:53] -rw-r--r-- 2 boinc boinc    590105 Nov 24 00:58 input.tar.gz
[2025-11-24 01:02:53] -rw-r--r-- 2 boinc boinc     15847 Nov 24 00:58 start_atlas.sh
[2025-11-24 01:02:53] drwxrwx--x 2 boinc boinc      4096 Nov 24 00:58 shared
[2025-11-24 01:02:53] -rw-r--r-- 1 boinc boinc         0 Nov 24 00:58 boinc_setup_complete
[2025-11-24 01:02:53] -rw-r--r-- 1 boinc boinc      6195 Nov 24 00:58 init_data.xml
[2025-11-24 01:02:53] -rw-r--r-- 1 boinc boinc         0 Nov 24 00:58 boinc_lockfile
[2025-11-24 01:02:53] -rw-r--r-- 1 boinc boinc      2783 Nov 24 00:58 pandaJob.out
[2025-11-24 01:02:53] -rw------- 1 boinc boinc    989786 Nov 24 00:58 agis_schedconf.cvmfs.json
[2025-11-24 01:02:53] -rw------- 1 boinc boinc   1526164 Nov 24 00:58 agis_ddmendpoints.agis.ALL.json
[2025-11-24 01:02:53] drwx------ 5 boinc boinc      4096 Nov 24 00:58 pilot3
[2025-11-24 01:02:53] -rw-r--r-- 1 boinc boinc       522 Nov 24 00:59 boinc_task_state.xml
[2025-11-24 01:02:53] -rw------- 1 boinc boinc       950 Nov 24 00:59 memory_monitor_summary.json
[2025-11-24 01:02:53] -rw------- 1 boinc boinc     56033 Nov 24 00:59 log.47556149._000904.job.log.tgz.1
[2025-11-24 01:02:53] -rw------- 1 boinc boinc        95 Nov 24 01:01 pilot_heartbeat.json
[2025-11-24 01:02:53] -rw------- 1 boinc boinc      8381 Nov 24 01:01 heartbeat.json
[2025-11-24 01:02:53] -rw-r--r-- 1 boinc boinc      8192 Nov 24 01:02 boinc_mmap_file
[2025-11-24 01:02:53] -rw-r--r-- 1 boinc boinc        22 Nov 24 01:02 wrapper_checkpoint.txt
[2025-11-24 01:02:53] -rw------- 1 boinc boinc      4751 Nov 24 01:02 pilotlog.txt
[2025-11-24 01:02:53] -rw------- 1 boinc boinc     91535 Nov 24 01:02 log.47556149._000904.job.log.1
[2025-11-24 01:02:53] -rw------- 1 boinc boinc       186 Nov 24 01:02 output.list
[2025-11-24 01:02:53] -rw-r--r-- 1 boinc boinc       620 Nov 24 01:02 runtime_log
[2025-11-24 01:02:53] -rw------- 1 boinc boinc    163840 Nov 24 01:02 result.tar.gz
[2025-11-24 01:02:53] -rw-r--r-- 1 boinc boinc      8744 Nov 24 01:02 runtime_log.err
[2025-11-24 01:02:53] -rw------- 1 boinc boinc       649 Nov 24 01:02 A37KDmRn6g8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmbJKKDmJHbyNm.diag
[2025-11-24 01:02:53] -rw-r--r-- 1 boinc boinc      9490 Nov 24 01:02 stderr.txt
[2025-11-24 01:02:53] No HITS result produced
[2025-11-24 01:02:53]  *** Contents of shared directory: ***
[2025-11-24 01:02:53] total 401508
[2025-11-24 01:02:53] -rw-r--r-- 2 boinc boinc 410363180 Nov 24 00:58 ATLAS.root_0
[2025-11-24 01:02:53] -rw-r--r-- 2 boinc boinc    590105 Nov 24 00:58 input.tar.gz
[2025-11-24 01:02:53] -rw-r--r-- 2 boinc boinc     15847 Nov 24 00:58 start_atlas.sh
[2025-11-24 01:02:53] -rw------- 1 boinc boinc    163840 Nov 24 01:02 result.tar.gz
01:02:54 (217441): run_atlas exited; CPU time 30.655613
01:02:54 (217441): called boinc_finish(0)

</stderr_txt>
]]>

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