Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:11:45 (279976): wrapper (7.7.26015): starting
01:11:45 (279976): wrapper: running run_atlas (--nthreads 3)
[2025-11-24 01:11:45] Arguments: --nthreads 3
[2025-11-24 01:11:45] Threads: 3
[2025-11-24 01:11:45] Checking for CVMFS
[2025-11-24 01:11:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 01:11:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 01:11:46] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 01:11:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 01:11:46] 2.9.2.0 154488 26 51164 153226 1 88 34926769 36864001 0 130560 0 375618 100.000 4 4 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-24 01:11:46] CVMFS is ok
[2025-11-24 01:11:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 01:11:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 01:11:46] Further information can be found at the LHC@home message board.
[2025-11-24 01:11:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 01:11:46] Checking for apptainer binary...
[2025-11-24 01:11:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 01:11:46] Running /usr/bin/apptainer --version
[2025-11-24 01:11:46] apptainer version 1.4.1-1.1
[2025-11-24 01:11:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 01:11:46] thA335
[2025-11-24 01:11:46] apptainer works
[2025-11-24 01:11:46] Set ATHENA_PROC_NUMBER=3
[2025-11-24 01:11:46] Set ATHENA_CORE_NUMBER=3
[2025-11-24 01:11:46] Starting ATLAS job with PandaID=6894287379
[2025-11-24 01:11:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 01:16:04]  *** The last 200 lines of the pilot log: ***
[2025-11-24 01:16:04] 2025-11-24 00:15:12,619 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 01:16:04] 2025-11-24 00:15:12,619 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 01:16:04] 2025-11-24 00:15:12,619 | INFO     | update_server=False
[2025-11-24 01:16:04] 2025-11-24 00:15:12,619 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 01:16:04] 2025-11-24 00:15:12,619 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 01:16:04] 2025-11-24 00:15:12,918 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-24 01:16:04] 2025-11-24 00:15:12,918 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-24 01:16:04] 2025-11-24 00:15:12,919 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 01:16:04] 2025-11-24 00:15:12,919 | INFO     | will abort loop
[2025-11-24 01:16:04] 2025-11-24 00:15:13,113 | INFO     | all data control threads have been joined
[2025-11-24 01:16:04] 2025-11-24 00:15:13,166 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 01:16:04] 2025-11-24 00:15:13,436 | INFO     | all payload control threads have been joined
[2025-11-24 01:16:04] 2025-11-24 00:15:13,621 | INFO     | [job] queue monitor thread has finished
[2025-11-24 01:16:04] 2025-11-24 00:15:13,624 | INFO     | [job] retrieve thread has finished
[2025-11-24 01:16:04] 2025-11-24 00:15:13,765 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 01:16:04] 2025-11-24 00:15:13,925 | INFO     | [job] job monitor thread has finished
[2025-11-24 01:16:04] 2025-11-24 00:15:13,982 | INFO     | all job control threads have been joined
[2025-11-24 01:16:04] 2025-11-24 00:15:14,026 | INFO     | [payload] validate_post thread has finished
[2025-11-24 01:16:04] 2025-11-24 00:15:14,056 | INFO     | [data] copytool_in thread has finished
[2025-11-24 01:16:04] 2025-11-24 00:15:14,119 | INFO     | [data] control thread has finished
[2025-11-24 01:16:04] 2025-11-24 00:15:14,383 | INFO     | [job] validate thread has finished
[2025-11-24 01:16:04] 2025-11-24 00:15:14,442 | INFO     | [payload] control thread has finished
[2025-11-24 01:16:04] 2025-11-24 00:15:14,492 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 01:16:04] 2025-11-24 00:15:14,529 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 01:16:04] 2025-11-24 00:15:14,578 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 01:16:04] 2025-11-24 00:15:14,988 | INFO     | [job] control thread has finished
[2025-11-24 01:16:04] 2025-11-24 00:15:15,050 | INFO     | [payload] failed_post thread has finished
[2025-11-24 01:16:04] 2025-11-24 00:15:15,129 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 01:16:04] 2025-11-24 00:15:15,173 | INFO     | [data] copytool_out thread has finished
[2025-11-24 01:16:04] 2025-11-24 00:15:19,136 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 01:16:04] 2025-11-24 00:15:42,578 | INFO     | PID=283702 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-24 01:16:04] 2025-11-24 00:15:42,578 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 01:16:04] 2025-11-24 00:15:42,578 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 01:16:04] 2025-11-24 00:15:42,578 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 01:16:04] 2025-11-24 00:15:57,658 | INFO     | [monitor] cgroup control has ended
[2025-11-24 01:16:04] 2025-11-24 00:15:58,954 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140066334689088)>', '<ExcThread(monitor, started 140065695053568)>']
[2025-11-24 01:16:04] 2025-11-24 00:15:59,669 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 01:16:04] 2025-11-24 00:15:59,670 | INFO     | [monitor] control thread has ended
[2025-11-24 01:16:04] 2025-11-24 00:16:03,979 | INFO     | all workflow threads have been joined
[2025-11-24 01:16:04] 2025-11-24 00:16:03,980 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 01:16:04] 2025-11-24 00:16:03,980 | INFO     | traces error code: 0
[2025-11-24 01:16:04] 2025-11-24 00:16:03,981 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 01:16:04] 2025-11-24 00:16:04,031 [wrapper] ==== pilot stdout END ====
[2025-11-24 01:16:04] 2025-11-24 00:16:04,034 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 01:16:04] 2025-11-24 00:16:04,037 [wrapper] pilotpid: 283702
[2025-11-24 01:16:04] 2025-11-24 00:16:04,040 [wrapper] Pilot exit status: 0
[2025-11-24 01:16:04] 2025-11-24 00:16:04,047 [wrapper] pandaids: 6894287379
[2025-11-24 01:16:04] 2025-11-24 00:16:04,064 [wrapper] cleanup supervisor_pilot  283708 283703
[2025-11-24 01:16:04] 2025-11-24 00:16:04,067 [wrapper] Test setup, not cleaning
[2025-11-24 01:16:04] 2025-11-24 00:16:04,070 [wrapper] apfmon messages muted
[2025-11-24 01:16:04] 2025-11-24 00:16:04,072 [wrapper] ==== wrapper stdout END ====
[2025-11-24 01:16:04] 2025-11-24 00:16:04,075 [wrapper] ==== wrapper stderr END ====
[2025-11-24 01:16:04]  *** Error codes and diagnostics ***
[2025-11-24 01:16:04]     "exeErrorCode": 65,
[2025-11-24 01:16:04]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-24 01:16:04]     "pilotErrorCode": 1305,
[2025-11-24 01:16:04]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-24 01:16:04]  *** Listing of results directory ***
[2025-11-24 01:16:04] total 402360
[2025-11-24 01:16:04] -rw-r--r-- 1 boinc boinc    576529 Nov 21 11:50 pilot3.tar.gz
[2025-11-24 01:16:04] -rwx------ 1 boinc boinc     36292 Nov 21 11:54 runpilot2-wrapper.sh
[2025-11-24 01:16:04] -rw-r--r-- 1 boinc boinc      5112 Nov 21 11:54 queuedata.json
[2025-11-24 01:16:04] -rw-r--r-- 1 boinc boinc       100 Nov 24 01:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 01:16:04] -rwxr-xr-x 1 boinc boinc      7986 Nov 24 01:11 run_atlas
[2025-11-24 01:16:04] -rw-r--r-- 1 boinc boinc       105 Nov 24 01:11 job.xml
[2025-11-24 01:16:04] -rw-r--r-- 2 boinc boinc 407826127 Nov 24 01:11 EVNT.47493127._002378.pool.root.1
[2025-11-24 01:16:04] -rw-r--r-- 2 boinc boinc    590103 Nov 24 01:11 input.tar.gz
[2025-11-24 01:16:04] -rw-r--r-- 2 boinc boinc     15847 Nov 24 01:11 start_atlas.sh
[2025-11-24 01:16:04] drwxrwx--x 2 boinc boinc      4096 Nov 24 01:11 shared
[2025-11-24 01:16:04] -rw-r--r-- 1 boinc boinc         0 Nov 24 01:11 boinc_setup_complete
[2025-11-24 01:16:04] -rw-r--r-- 1 boinc boinc      6195 Nov 24 01:11 init_data.xml
[2025-11-24 01:16:04] -rw-r--r-- 1 boinc boinc         0 Nov 24 01:11 boinc_lockfile
[2025-11-24 01:16:04] -rw-r--r-- 1 boinc boinc      2785 Nov 24 01:11 pandaJob.out
[2025-11-24 01:16:04] -rw------- 1 boinc boinc    989786 Nov 24 01:11 agis_schedconf.cvmfs.json
[2025-11-24 01:16:04] -rw------- 1 boinc boinc   1526164 Nov 24 01:11 agis_ddmendpoints.agis.ALL.json
[2025-11-24 01:16:04] drwx------ 5 boinc boinc      4096 Nov 24 01:11 pilot3
[2025-11-24 01:16:04] -rw-r--r-- 1 boinc boinc       523 Nov 24 01:12 boinc_task_state.xml
[2025-11-24 01:16:04] -rw------- 1 boinc boinc       953 Nov 24 01:13 memory_monitor_summary.json
[2025-11-24 01:16:04] -rw------- 1 boinc boinc     54238 Nov 24 01:13 log.47533967._003493.job.log.tgz.1
[2025-11-24 01:16:04] -rw------- 1 boinc boinc        95 Nov 24 01:14 pilot_heartbeat.json
[2025-11-24 01:16:04] -rw------- 1 boinc boinc      8404 Nov 24 01:15 heartbeat.json
[2025-11-24 01:16:04] -rw-r--r-- 1 boinc boinc      8192 Nov 24 01:15 boinc_mmap_file
[2025-11-24 01:16:04] -rw-r--r-- 1 boinc boinc        23 Nov 24 01:15 wrapper_checkpoint.txt
[2025-11-24 01:16:04] -rw------- 1 boinc boinc      4937 Nov 24 01:16 pilotlog.txt
[2025-11-24 01:16:04] -rw------- 1 boinc boinc     93485 Nov 24 01:16 log.47533967._003493.job.log.1
[2025-11-24 01:16:04] -rw------- 1 boinc boinc       186 Nov 24 01:16 output.list
[2025-11-24 01:16:04] -rw-r--r-- 1 boinc boinc       620 Nov 24 01:16 runtime_log
[2025-11-24 01:16:04] -rw------- 1 boinc boinc    163840 Nov 24 01:16 result.tar.gz
[2025-11-24 01:16:04] -rw-r--r-- 1 boinc boinc      8744 Nov 24 01:16 runtime_log.err
[2025-11-24 01:16:04] -rw------- 1 boinc boinc       649 Nov 24 01:16 a8HMDmfxdg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmXXHKDmb2zl4n.diag
[2025-11-24 01:16:04] -rw-r--r-- 1 boinc boinc      8235 Nov 24 01:16 stderr.txt
[2025-11-24 01:16:04] No HITS result produced
[2025-11-24 01:16:04]  *** Contents of shared directory: ***
[2025-11-24 01:16:04] total 399028
[2025-11-24 01:16:04] -rw-r--r-- 2 boinc boinc 407826127 Nov 24 01:11 ATLAS.root_0
[2025-11-24 01:16:04] -rw-r--r-- 2 boinc boinc    590103 Nov 24 01:11 input.tar.gz
[2025-11-24 01:16:04] -rw-r--r-- 2 boinc boinc     15847 Nov 24 01:11 start_atlas.sh
[2025-11-24 01:16:04] -rw------- 1 boinc boinc    163840 Nov 24 01:16 result.tar.gz
01:16:05 (279976): run_atlas exited; CPU time 32.127412
01:16:05 (279976): called boinc_finish(0)

</stderr_txt>
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