Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:30:29 (1312298): wrapper (7.7.26015): starting
19:30:30 (1312298): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 19:30:30] Arguments: --nthreads 8
[2025-11-23 19:30:30] Threads: 8
[2025-11-23 19:30:30] Checking for CVMFS
[2025-11-23 19:30:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 19:30:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 19:30:31] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 19:30:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 19:30:32] 2.13.3.0 13031 26450 370620 153227 0 763 16563754 32935937 32574 16776704 0 148088685 99.560 156361506 34699 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-23 19:30:32] CVMFS is ok
[2025-11-23 19:30:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 19:30:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 19:30:32] Further information can be found at the LHC@home message board.
[2025-11-23 19:30:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 19:30:32] Checking for apptainer binary...
[2025-11-23 19:30:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 19:30:32] Running /usr/bin/apptainer --version
[2025-11-23 19:30:32] apptainer version 1.4.4-1.el9
[2025-11-23 19:30:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 19:30:33] c6-2-11-4.aglt2.org
[2025-11-23 19:30:33] apptainer works
[2025-11-23 19:30:33] Set ATHENA_PROC_NUMBER=8
[2025-11-23 19:30:33] Set ATHENA_CORE_NUMBER=8
[2025-11-23 19:30:33] Starting ATLAS job with PandaID=6895345478
[2025-11-23 19:30:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 19:51:54]  *** The last 200 lines of the pilot log: ***
[2025-11-24 19:51:54] 2025-11-25 00:51:04,139 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 19:51:54] 2025-11-25 00:51:05,749 | INFO     | time since job start (87551s) is within the limit (172800.0s)
[2025-11-24 19:51:54] 2025-11-25 00:51:06,668 | INFO     | monitor loop #4253: job 0:6895345478 is in state 'finished'
[2025-11-24 19:51:54] 2025-11-25 00:51:06,668 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 19:51:54] 2025-11-25 00:51:07,756 | INFO     | time since job start (87553s) is within the limit (172800.0s)
[2025-11-24 19:51:54] 2025-11-25 00:51:09,173 | INFO     | monitor loop #4254: job 0:6895345478 is in state 'finished'
[2025-11-24 19:51:54] 2025-11-25 00:51:09,173 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 19:51:54] 2025-11-25 00:51:09,762 | INFO     | time since job start (87555s) is within the limit (172800.0s)
[2025-11-24 19:51:54] 2025-11-25 00:51:11,716 | INFO     | monitor loop #4255: job 0:6895345478 is in state 'finished'
[2025-11-24 19:51:54] 2025-11-25 00:51:11,716 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 19:51:54] 2025-11-25 00:51:11,769 | INFO     | time since job start (87557s) is within the limit (172800.0s)
[2025-11-24 19:51:54] 2025-11-25 00:51:13,960 | INFO     | PID=1318387 has CPU usage=7.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 19:51:54] 2025-11-25 00:51:13,961 | INFO     | .. there are 39 such processes running
[2025-11-24 19:51:54] 2025-11-25 00:51:14,303 | INFO     | monitor loop #4256: job 0:6895345478 is in state 'finished'
[2025-11-24 19:51:54] 2025-11-25 00:51:14,304 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 19:51:54] 2025-11-25 00:51:14,962 | INFO     | time since job start (87560s) is within the limit (172800.0s)
[2025-11-24 19:51:54] 2025-11-25 00:51:15,739 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-24 19:51:54] 2025-11-25 00:51:15,753 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2678.0145416666664
[2025-11-24 19:51:54] 2025-11-25 00:51:15,857 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6895345478/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 19:51:54] 2025-11-25 00:51:15,858 | INFO     | extracted standard info from prmon json
[2025-11-24 19:51:54] 2025-11-25 00:51:15,858 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 19:51:54] 2025-11-25 00:51:15,858 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 19:51:54] 2025-11-25 00:51:16,002 | INFO     | fitting pss+swap vs Time
[2025-11-24 19:51:54] 2025-11-25 00:51:16,045 | INFO     | sum of square deviations: 910644850326.9426
[2025-11-24 19:51:54] 2025-11-25 00:51:16,296 | INFO     | sum of deviations: 5740393960387.671
[2025-11-24 19:51:54] 2025-11-25 00:51:16,297 | INFO     | mean x: 1763988149.993715
[2025-11-24 19:51:54] 2025-11-25 00:51:16,297 | INFO     | mean y: 2905517.7416201117
[2025-11-24 19:51:54] 2025-11-25 00:51:16,297 | INFO     | intersect: -11116673008.161072
[2025-11-24 19:51:54] 2025-11-25 00:51:16,322 | INFO     | chi2: 18.51092126580294
[2025-11-24 19:51:54] 2025-11-25 00:51:16,339 | INFO     | sum of square deviations: 901142987170.3684
[2025-11-24 19:51:54] 2025-11-25 00:51:16,414 | INFO     | sum of deviations: 6266298839009.638
[2025-11-24 19:51:54] 2025-11-25 00:51:16,415 | INFO     | mean x: 1763987997.516468
[2025-11-24 19:51:54] 2025-11-25 00:51:16,415 | INFO     | mean y: 2913955.100911002
[2025-11-24 19:51:54] 2025-11-25 00:51:16,415 | INFO     | intersect: -12263370195.401602
[2025-11-24 19:51:54] 2025-11-25 00:51:16,417 | INFO     | chi2: 14.89604040501744
[2025-11-24 19:51:54] 2025-11-25 00:51:16,417 | INFO     | current chi2=14.89604040501744 (change=19.52836819344928 %)
[2025-11-24 19:51:54] 2025-11-25 00:51:16,417 | INFO     | right removable region: 1426
[2025-11-24 19:51:54] 2025-11-25 00:51:16,419 | INFO     | sum of square deviations: 901137314780.3663
[2025-11-24 19:51:54] 2025-11-25 00:51:16,525 | INFO     | sum of deviations: 5138739590386.842
[2025-11-24 19:51:54] 2025-11-25 00:51:16,526 | INFO     | mean x: 1763988302.516468
[2025-11-24 19:51:54] 2025-11-25 00:51:16,526 | INFO     | mean y: 2915168.857743518
[2025-11-24 19:51:54] 2025-11-25 00:51:16,526 | INFO     | intersect: -10056236059.753828
[2025-11-24 19:51:54] 2025-11-25 00:51:16,528 | INFO     | chi2: 13.921655225563185
[2025-11-24 19:51:54] 2025-11-25 00:51:16,528 | INFO     | current chi2=13.921655225563185 (change=24.792207661311593 %)
[2025-11-24 19:51:54] 2025-11-25 00:51:16,528 | INFO     | left removable region: 10
[2025-11-24 19:51:54] 2025-11-25 00:51:16,530 | INFO     | sum of square deviations: 880460850140.6272
[2025-11-24 19:51:54] 2025-11-25 00:51:16,594 | INFO     | sum of deviations: 5234189342078.384
[2025-11-24 19:51:54] 2025-11-25 00:51:16,594 | INFO     | mean x: 1763988272.0670905
[2025-11-24 19:51:54] 2025-11-25 00:51:16,594 | INFO     | mean y: 2933561.448446328
[2025-11-24 19:51:54] 2025-11-25 00:51:16,594 | INFO     | intersect: -10483675368.102625
[2025-11-24 19:51:54] 2025-11-25 00:51:16,596 | INFO     | chi2: 6.435708270608807
[2025-11-24 19:51:54] 2025-11-25 00:51:16,597 | INFO     | current memory leak: 5.94 B/s (using 1416 data points, chi2=6.44)
[2025-11-24 19:51:54] 2025-11-25 00:51:16,599 | INFO     | could have reported an average CPU frequency of 2653 MHz (51 samples)
[2025-11-24 19:51:54] 2025-11-25 00:51:16,599 | INFO     | ..............................
[2025-11-24 19:51:54] 2025-11-25 00:51:16,599 | INFO     | . Timing measurements:
[2025-11-24 19:51:54] 2025-11-25 00:51:16,599 | INFO     | . get job = 0 s
[2025-11-24 19:51:54] 2025-11-25 00:51:16,599 | INFO     | . initial setup = 9 s
[2025-11-24 19:51:54] 2025-11-25 00:51:16,599 | INFO     | . payload setup = 64 s
[2025-11-24 19:51:54] 2025-11-25 00:51:16,599 | INFO     | . stage-in = 0 s
[2025-11-24 19:51:54] 2025-11-25 00:51:16,599 | INFO     | . payload execution = 87364 s
[2025-11-24 19:51:54] 2025-11-25 00:51:16,599 | INFO     | . stage-out = 14 s
[2025-11-24 19:51:54] 2025-11-25 00:51:16,599 | INFO     | . log creation = 1 s
[2025-11-24 19:51:54] 2025-11-25 00:51:16,600 | INFO     | ..............................
[2025-11-24 19:51:54] 2025-11-25 00:51:17,043 | INFO     | time since job start (87563s) is within the limit (172800.0s)
[2025-11-24 19:51:54] 2025-11-25 00:51:17,305 | INFO     | 
[2025-11-24 19:51:54] 2025-11-25 00:51:17,307 | INFO     | job summary report
[2025-11-24 19:51:54] 2025-11-25 00:51:17,307 | INFO     | --------------------------------------------------
[2025-11-24 19:51:54] 2025-11-25 00:51:17,307 | INFO     | PanDA job id: 6895345478
[2025-11-24 19:51:54] 2025-11-25 00:51:17,307 | INFO     | task id: 47556149
[2025-11-24 19:51:54] 2025-11-25 00:51:17,307 | INFO     | errors: (none)
[2025-11-24 19:51:54] 2025-11-25 00:51:17,307 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 19:51:54] 2025-11-25 00:51:17,307 | INFO     | pilot state: finished 
[2025-11-24 19:51:54] 2025-11-25 00:51:17,307 | INFO     | transexitcode: 0
[2025-11-24 19:51:54] 2025-11-25 00:51:17,308 | INFO     | exeerrorcode: 0
[2025-11-24 19:51:54] 2025-11-25 00:51:17,308 | INFO     | exeerrordiag: 
[2025-11-24 19:51:54] 2025-11-25 00:51:17,308 | INFO     | exitcode: 0
[2025-11-24 19:51:54] 2025-11-25 00:51:17,308 | INFO     | exitmsg: OK
[2025-11-24 19:51:54] 2025-11-25 00:51:17,308 | INFO     | cpuconsumptiontime: 255483 s
[2025-11-24 19:51:54] 2025-11-25 00:51:17,308 | INFO     | nevents: 1000
[2025-11-24 19:51:54] 2025-11-25 00:51:17,308 | INFO     | neventsw: 0
[2025-11-24 19:51:54] 2025-11-25 00:51:17,308 | INFO     | pid: 1328406
[2025-11-24 19:51:54] 2025-11-25 00:51:17,308 | INFO     | pgrp: 1328406
[2025-11-24 19:51:54] 2025-11-25 00:51:17,308 | INFO     | corecount: 8
[2025-11-24 19:51:54] 2025-11-25 00:51:17,308 | INFO     | event service: False
[2025-11-24 19:51:54] 2025-11-25 00:51:17,308 | INFO     | sizes: {0: 2298520, 1: 2298576, 2: 2298632, 3: 2298831, 4: 2298831, 16: 2298859, 27: 2299015, 38: 2299043, 41: 2299333, 50: 2299361, 87435: 2362849, 87436: 2363128
[2025-11-24 19:51:54] 2025-11-25 00:51:17,309 | INFO     | --------------------------------------------------
[2025-11-24 19:51:54] 2025-11-25 00:51:17,309 | INFO     | 
[2025-11-24 19:51:54] 2025-11-25 00:51:17,309 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-24 19:51:54] 2025-11-25 00:51:17,487 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 19:51:54] 2025-11-25 00:51:17,487 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 19:51:54] 2025-11-25 00:51:17,487 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 19:51:54] 2025-11-25 00:51:17,487 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 19:51:54] 2025-11-25 00:51:17,487 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 19:51:54] 2025-11-25 00:51:17,487 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 19:51:54] 2025-11-25 00:51:17,488 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 19:51:54] 2025-11-25 00:51:17,488 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 19:51:54] 2025-11-25 00:51:17,488 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 19:51:54] 2025-11-25 00:51:17,488 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 19:51:54] 2025-11-25 00:51:17,488 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 19:51:54] 2025-11-25 00:51:17,488 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 19:51:54] 2025-11-25 00:51:17,488 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 19:51:54] 2025-11-25 00:51:17,488 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 19:51:54] 2025-11-25 00:51:17,488 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 19:51:54] 2025-11-25 00:51:17,488 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 19:51:54] 2025-11-25 00:51:17,488 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 19:51:54] 2025-11-25 00:51:17,488 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 19:51:54] 2025-11-25 00:51:17,488 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 19:51:54] 2025-11-25 00:51:17,488 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 19:51:54] 2025-11-25 00:51:17,489 | INFO     | job 6895345478 has completed (purged errors)
[2025-11-24 19:51:54] 2025-11-25 00:51:17,489 | INFO     | overall cleanup function is called
[2025-11-24 19:51:54] 2025-11-25 00:51:18,565 | INFO     | --- collectZombieJob: --- 10, [1328406]
[2025-11-24 19:51:54] 2025-11-25 00:51:18,566 | INFO     | zombie collector waiting for pid 1328406
[2025-11-24 19:51:54] 2025-11-25 00:51:18,566 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 19:51:54] 2025-11-25 00:51:18,566 | INFO     | collected zombie processes
[2025-11-24 19:51:54] 2025-11-25 00:51:18,566 | INFO     | will attempt to kill all subprocesses of pid=1328406
[2025-11-24 19:51:54] 2025-11-25 00:51:19,733 | INFO     | process IDs to be killed: [1328406] (in reverse order)
[2025-11-24 19:51:54] 2025-11-25 00:51:19,952 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 19:51:54] 2025-11-25 00:51:19,953 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 19:51:54] 2025-11-25 00:51:19,996 | INFO     | did not find any defunct processes belonging to 1328406
[2025-11-24 19:51:54] 2025-11-25 00:51:20,036 | INFO     | did not find any defunct processes belonging to 1328406
[2025-11-24 19:51:54] 2025-11-25 00:51:20,037 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 19:51:54] 2025-11-25 00:51:20,038 | INFO     | ready for new job
[2025-11-24 19:51:54] 2025-11-25 00:51:20,038 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 19:51:54] 2025-11-25 00:51:20,067 | INFO     | ***************************************
[2025-11-24 19:51:54] 2025-11-25 00:51:20,068 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 19:51:54] 2025-11-25 00:51:20,068 | INFO     | ***************************************
[2025-11-24 19:51:54] 2025-11-25 00:51:20,068 | INFO     | 
[2025-11-24 19:51:54] 2025-11-25 00:51:20,120 | INFO     | architecture information:
[2025-11-24 19:51:54] 2025-11-25 00:51:20,141 | INFO     | executing command: cat /etc/os-release
[2025-11-24 19:51:54] 2025-11-25 00:51:20,321 | INFO     | cat /etc/os-release:
[2025-11-24 19:51:54] NAME="CentOS Linux"
[2025-11-24 19:51:54] VERSION="7 (Core)"
[2025-11-24 19:51:54] ID="centos"
[2025-11-24 19:51:54] ID_LIKE="rhel fedora"
[2025-11-24 19:51:54] VERSION_ID="7"
[2025-11-24 19:51:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 19:51:54] ANSI_COLOR="0;31"
[2025-11-24 19:51:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 19:51:54] HOME_URL="https://www.centos.org/"
[2025-11-24 19:51:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 19:51:54] 
[2025-11-24 19:51:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 19:51:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 19:51:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 19:51:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 19:51:54] 
[2025-11-24 19:51:54] 2025-11-25 00:51:20,322 | INFO     | ***************************************
[2025-11-24 19:51:54] 2025-11-25 00:51:20,826 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-24 19:51:54] 2025-11-25 00:51:20,894 | INFO     | sufficient remaining disk space (88764055552 B)
[2025-11-24 19:51:54] 2025-11-25 00:51:20,894 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 19:51:54] 2025-11-25 00:51:20,895 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 19:51:54] 2025-11-25 00:51:20,895 | INFO     | update_server=False
[2025-11-24 19:51:54] 2025-11-25 00:51:20,895 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 19:51:54] 2025-11-25 00:51:20,895 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 19:51:54] 2025-11-25 00:51:20,896 | INFO     | aborting loop
[2025-11-24 19:51:54] 2025-11-25 00:51:20,896 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 19:51:54] 2025-11-25 00:51:21,247 | INFO     | all payload control threads have been joined
[2025-11-24 19:51:54] 2025-11-25 00:51:21,430 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 19:51:54] 2025-11-25 00:51:21,901 | INFO     | [job] retrieve thread has finished
[2025-11-24 19:51:54] 2025-11-25 00:51:21,902 | INFO     | [job] job monitor thread has finished
[2025-11-24 19:51:54] 2025-11-25 00:51:21,933 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 19:51:54] 2025-11-25 00:51:21,942 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 19:51:54] 2025-11-25 00:51:21,956 | INFO     | all data control threads have been joined
[2025-11-24 19:51:54] 2025-11-25 00:51:22,033 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 19:51:54] 2025-11-25 00:51:22,254 | INFO     | [payload] control thread has finished
[2025-11-24 19:51:54] 2025-11-25 00:51:22,322 | INFO     | all job control threads have been joined
[2025-11-24 19:51:54] 2025-11-25 00:51:22,452 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 19:51:54] 2025-11-25 00:51:22,460 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 19:51:54] 2025-11-25 00:51:22,963 | INFO     | [data] control thread has finished
[2025-11-24 19:51:54] 2025-11-25 00:51:22,974 | INFO     | [payload] validate_post thread has finished
[2025-11-24 19:51:54] 2025-11-25 00:51:23,033 | INFO     | [payload] failed_post thread has finished
[2025-11-24 19:51:54] 2025-11-25 00:51:23,045 | INFO     | [job] queue monitor thread has finished
[2025-11-24 19:51:54] 2025-11-25 00:51:23,330 | INFO     | [job] control thread has finished
[2025-11-24 19:51:54] 2025-11-25 00:51:23,363 | INFO     | [job] validate thread has finished
[2025-11-24 19:51:54] 2025-11-25 00:51:23,371 | INFO     | [data] copytool_in thread has finished
[2025-11-24 19:51:54] 2025-11-25 00:51:23,475 | INFO     | [data] copytool_out thread has finished
[2025-11-24 19:51:54] 2025-11-25 00:51:24,905 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 19:51:54] 2025-11-25 00:51:42,930 | INFO     | [monitor] cgroup control has ended
[2025-11-24 19:51:54] 2025-11-25 00:51:43,162 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140020732434240)>', '<ExcThread(monitor, started 140020002309888)>']
[2025-11-24 19:51:54] 2025-11-25 00:51:48,190 | INFO     | all workflow threads have been joined
[2025-11-24 19:51:54] 2025-11-25 00:51:48,191 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 19:51:54] 2025-11-25 00:51:48,191 | INFO     | traces error code: 0
[2025-11-24 19:51:54] 2025-11-25 00:51:48,191 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 19:51:54] 2025-11-25 00:51:51,170 | INFO     | PID=1318387 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 19:51:54] 2025-11-25 00:51:51,170 | INFO     | .. there are 39 such processes running
[2025-11-24 19:51:54] 2025-11-25 00:51:51,171 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 19:51:54] 2025-11-25 00:51:51,172 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 19:51:54] 2025-11-25 00:51:51,172 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 19:51:54] 2025-11-25 00:51:51,172 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 19:51:54] 2025-11-25 00:51:51,172 | INFO     | [monitor] control thread has ended
[2025-11-24 19:51:54] 2025-11-25 00:51:53,695 [wrapper] ==== pilot stdout END ====
[2025-11-24 19:51:54] 2025-11-25 00:51:53,729 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 19:51:54] 2025-11-25 00:51:53,775 [wrapper] pilotpid: 1318387
[2025-11-24 19:51:54] 2025-11-25 00:51:53,815 [wrapper] Pilot exit status: 0
[2025-11-24 19:51:54] 2025-11-25 00:51:53,966 [wrapper] pandaids: 6895345478
[2025-11-24 19:51:54] 2025-11-25 00:51:54,072 [wrapper] cleanup supervisor_pilot 2093097 1318388
[2025-11-24 19:51:54] 2025-11-25 00:51:54,075 [wrapper] Test setup, not cleaning
[2025-11-24 19:51:54] 2025-11-25 00:51:54,077 [wrapper] apfmon messages muted
[2025-11-24 19:51:54] 2025-11-25 00:51:54,079 [wrapper] ==== wrapper stdout END ====
[2025-11-24 19:51:54] 2025-11-25 00:51:54,082 [wrapper] ==== wrapper stderr END ====
[2025-11-24 19:51:54]  *** Error codes and diagnostics ***
[2025-11-24 19:51:54]     "exeErrorCode": 0,
[2025-11-24 19:51:54]     "exeErrorDiag": "",
[2025-11-24 19:51:54]     "pilotErrorCode": 0,
[2025-11-24 19:51:54]     "pilotErrorDiag": "",
[2025-11-24 19:51:54]  *** Listing of results directory ***
[2025-11-24 19:51:54] total 1314796
[2025-11-24 19:51:54] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 12:17 queuedata.json
[2025-11-24 19:51:54] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 12:17 pilot3.tar.gz
[2025-11-24 19:51:54] -rwx------. 1 boincer umatlas     36292 Nov 22 12:18 runpilot2-wrapper.sh
[2025-11-24 19:51:54] -rw-r--r--. 1 boincer umatlas       100 Nov 23 19:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 19:51:54] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 23 19:30 run_atlas
[2025-11-24 19:51:54] -rw-r--r--. 1 boincer umatlas       105 Nov 23 19:30 job.xml
[2025-11-24 19:51:54] -rw-r--r--. 2 boincer umatlas 409173813 Nov 23 19:30 EVNT.47483658._001103.pool.root.1
[2025-11-24 19:51:54] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 19:30 start_atlas.sh
[2025-11-24 19:51:54] drwxrwx--x. 2 boincer umatlas      4096 Nov 23 19:30 shared
[2025-11-24 19:51:54] -rw-r--r--. 2 boincer umatlas    590101 Nov 23 19:30 input.tar.gz
[2025-11-24 19:51:54] -rw-r--r--. 1 boincer umatlas         0 Nov 23 19:30 boinc_lockfile
[2025-11-24 19:51:54] -rw-r--r--. 1 boincer umatlas      2780 Nov 23 19:30 pandaJob.out
[2025-11-24 19:51:54] -rw-------. 1 boincer umatlas        57 Nov 23 19:30 setup.sh.local
[2025-11-24 19:51:54] -rw-------. 1 boincer umatlas    989786 Nov 23 19:31 agis_schedconf.cvmfs.json
[2025-11-24 19:51:54] drwx------. 5 boincer umatlas      4096 Nov 23 19:31 pilot3
[2025-11-24 19:51:54] -rw-r--r--. 1 boincer umatlas       533 Nov 24 19:36 boinc_task_state.xml
[2025-11-24 19:51:54] -rw-------. 1 boincer umatlas 909100774 Nov 24 19:47 HITS.47556149._000891.pool.root.1
[2025-11-24 19:51:54] -rw-r--r--. 1 boincer umatlas      6877 Nov 24 19:47 init_data.xml
[2025-11-24 19:51:54] -rw-------. 1 boincer umatlas      1059 Nov 24 19:50 memory_monitor_summary.json
[2025-11-24 19:51:54] -rw-------. 1 boincer umatlas   1516227 Nov 24 19:50 agis_ddmendpoints.agis.ALL.json
[2025-11-24 19:51:54] -rw-------. 1 boincer umatlas   2375648 Nov 24 19:50 log.47556149._000891.job.log.tgz.1
[2025-11-24 19:51:54] -rw-------. 1 boincer umatlas      8615 Nov 24 19:51 heartbeat.json
[2025-11-24 19:51:54] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 19:51 boinc_mmap_file
[2025-11-24 19:51:54] -rw-------. 1 boincer umatlas        95 Nov 24 19:51 pilot_heartbeat.json
[2025-11-24 19:51:54] -rw-------. 1 boincer umatlas       823 Nov 24 19:51 pilotlog.txt
[2025-11-24 19:51:54] -rw-r--r--. 1 boincer umatlas        29 Nov 24 19:51 wrapper_checkpoint.txt
[2025-11-24 19:51:54] -rw-------. 1 boincer umatlas   9707128 Nov 24 19:51 log.47556149._000891.job.log.1
[2025-11-24 19:51:54] -rw-------. 1 boincer umatlas       353 Nov 24 19:51 output.list
[2025-11-24 19:51:54] -rw-r--r--. 1 boincer umatlas       620 Nov 24 19:51 runtime_log
[2025-11-24 19:51:54] -rw-------. 1 boincer umatlas  12103680 Nov 24 19:51 result.tar.gz
[2025-11-24 19:51:54] -rw-------. 1 boincer umatlas       661 Nov 24 19:51 TyDLDmGR6g8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmxCIKDmOtysqm.diag
[2025-11-24 19:51:54] -rw-r--r--. 1 boincer umatlas      9348 Nov 24 19:51 runtime_log.err
[2025-11-24 19:51:54] -rw-r--r--. 1 boincer umatlas     21897 Nov 24 19:51 stderr.txt
[2025-11-24 19:51:54] HITS file was successfully produced:
[2025-11-24 19:51:54] -rw-------. 1 boincer umatlas 909100774 Nov 24 19:47 shared/HITS.pool.root.1
[2025-11-24 19:51:54]  *** Contents of shared directory: ***
[2025-11-24 19:51:54] total 1299804
[2025-11-24 19:51:54] -rw-r--r--. 2 boincer umatlas 409173813 Nov 23 19:30 ATLAS.root_0
[2025-11-24 19:51:54] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 19:30 start_atlas.sh
[2025-11-24 19:51:54] -rw-r--r--. 2 boincer umatlas    590101 Nov 23 19:30 input.tar.gz
[2025-11-24 19:51:54] -rw-------. 1 boincer umatlas 909100774 Nov 24 19:47 HITS.pool.root.1
[2025-11-24 19:51:54] -rw-------. 1 boincer umatlas  12103680 Nov 24 19:51 result.tar.gz
19:51:56 (1312298): run_atlas exited; CPU time 258511.891758
19:51:56 (1312298): called boinc_finish(0)

</stderr_txt>
]]>

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