Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-24 04:18:52 (48223): vboxwrapper version 26210
2025-11-24 04:18:52 (48223): BOINC client version: 8.2.5
2025-11-24 04:18:53 (48223): Detected: VirtualBox VboxManage Interface (Version: 7.2.2)
2025-11-24 04:18:53 (48223): Detected: Sandbox Configuration Enabled
2025-11-24 04:18:53 (48223): Successfully copied 'init_data.xml' to the shared directory.
2025-11-24 04:18:53 (48223): Create VM. (boinc_1b2517f55971002d, slot#3)
2025-11-24 04:18:53 (48223): Setting Memory Size for VM. (4400MB)
2025-11-24 04:18:53 (48223): Setting CPU Count for VM. (4)
2025-11-24 04:18:53 (48223): Setting Chipset Options for VM.
2025-11-24 04:18:53 (48223): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-24 04:18:53 (48223): Setting Boot Options for VM.
2025-11-24 04:18:53 (48223): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-24 04:18:53 (48223): Enabling VM Network Access.
2025-11-24 04:18:53 (48223): Disabling USB Support for VM.
2025-11-24 04:18:53 (48223): Disabling COM Port Support for VM.
2025-11-24 04:18:53 (48223): Disabling Audio Support for VM.
2025-11-24 04:18:53 (48223): Disabling Clipboard Support for VM.
2025-11-24 04:18:53 (48223): Disabling Drag and Drop Support for VM.
2025-11-24 04:18:53 (48223): Adding storage controller(s) to VM.
2025-11-24 04:18:53 (48223): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-24 04:18:53 (48223): Adding VirtualBox Guest Additions to VM.
2025-11-24 04:18:53 (48223): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-24 04:18:53 (48223): forwarding host port 64297 to guest port 80
2025-11-24 04:18:54 (48223): Enabling remote desktop for VM.
2025-11-24 04:18:54 (48223): Enabling shared directory for VM.
2025-11-24 04:18:54 (48223): Starting VM using VBoxManage interface. (boinc_1b2517f55971002d, slot#3)
2025-11-24 04:18:57 (48223): Successfully started VM. (PID = '48296')
2025-11-24 04:18:57 (48223): Reporting VM Process ID to BOINC.
2025-11-24 04:18:57 (48223): Guest Log: BIOS: VirtualBox 7.2.2
2025-11-24 04:18:57 (48223): Guest Log: CPUID EDX: 0x178bfbff
2025-11-24 04:18:57 (48223): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-24 04:18:57 (48223): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-24 04:18:57 (48223): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-24 04:18:57 (48223): Detected: Web Application Enabled (http://localhost:64297)
2025-11-24 04:18:57 (48223): Detected: Remote Desktop Enabled (localhost:64298)
2025-11-24 04:18:57 (48223): Preference change detected
2025-11-24 04:18:57 (48223): Setting CPU throttle for VM. (100%)
2025-11-24 04:18:57 (48223): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-24 04:18:59 (48223): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-24 04:18:59 (48223): Guest Log: BIOS: Booting from Hard Disk...
2025-11-24 04:19:02 (48223): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-24 04:19:02 (48223): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-24 04:19:02 (48223): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-24 04:19:02 (48223): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-24 04:19:02 (48223): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-24 04:19:02 (48223): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-24 04:19:02 (48223): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-24 04:19:02 (48223): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-24 04:19:02 (48223): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-24 04:19:02 (48223): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-24 04:19:02 (48223): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-24 04:19:02 (48223): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-24 04:19:02 (48223): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-24 04:19:02 (48223): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-24 04:19:02 (48223): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-24 04:19:02 (48223): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-24 04:19:02 (48223): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-24 04:19:02 (48223): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-24 04:19:02 (48223): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-24 04:19:02 (48223): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-24 04:19:02 (48223): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-24 04:19:02 (48223): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-24 04:19:02 (48223): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-24 04:19:02 (48223): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-24 04:19:02 (48223): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-24 04:19:02 (48223): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-24 04:19:02 (48223): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-24 04:19:02 (48223): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-24 04:19:02 (48223): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-24 04:19:02 (48223): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-24 04:19:02 (48223): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-24 04:19:02 (48223): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-24 04:19:56 (48223): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-24 04:19:56 (48223): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-24 04:20:08 (48223): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-24 04:20:08 (48223): Guest Log: 00:00:00.000124 main     Log opened 2025-11-24T09:20:06.015802000Z
2025-11-24 04:20:08 (48223): Guest Log: 00:00:00.000225 main     OS Product: Linux
2025-11-24 04:20:08 (48223): Guest Log: 00:00:00.000270 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-24 04:20:08 (48223): Guest Log: 00:00:00.000485 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-24 04:20:08 (48223): Guest Log: 00:00:00.000526 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-24 04:20:08 (48223): Guest Log: 00:00:00.000527 main     Process ID: 1322
2025-11-24 04:20:08 (48223): Guest Log: 00:00:00.000527 main     Package type: LINUX_64BITS_GENERIC
2025-11-24 04:20:08 (48223): Guest Log: 00:00:00.001950 main     5.2.32 r132073 started. Verbose level = 0
2025-11-24 04:20:08 (48223): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-24 04:20:08 (48223): Guest Log: [INFO] Mounting shared directory
2025-11-24 04:20:08 (48223): Guest Log: [INFO] Checking for init_data.xml
2025-11-24 04:20:12 (48223): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-24 04:20:12 (48223): Guest Log: [INFO] Detected branch: prod
2025-11-24 04:20:13 (48223): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-24 04:20:13 (48223): Guest Log: Copying input files
2025-11-24 04:20:15 (48223): Guest Log: Copied input files into RunAtlas.
2025-11-24 04:20:15 (48223): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-24 04:20:15 (48223): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-24 04:20:15 (48223): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-24 04:20:15 (48223): Guest Log: Further information can be found at the LHC@home message board.
2025-11-24 04:20:23 (48223): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-24 04:20:23 (48223): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-24 04:20:23 (48223): Guest Log: 2.6.3.0 1600 0 32152 153240 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-11-24 04:20:25 (48223): Guest Log: copied the webapp to /var/www
2025-11-24 04:20:25 (48223): Guest Log: ATHENA_PROC_NUMBER=4
2025-11-24 04:20:25 (48223): Guest Log: ATHENA_CORE_NUMBER=4
2025-11-24 04:20:26 (48223): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-24 04:20:26 (48223): Guest Log:  *** Starting ATLAS job. (PandaID=6895336347 taskID=47556137) ***
2025-11-24 05:58:38 (48223): Status Report: Elapsed Time: '6000.000000'
2025-11-24 05:58:38 (48223): Status Report: CPU Time: '22548.100000'
2025-11-24 06:00:02 (48223): VM state change detected. (old = 'running', new = 'paused')
2025-11-24 07:00:02 (48223): VM state change detected. (old = 'paused', new = 'running')
2025-11-24 07:00:07 (48223): Guest Log: 01:39:49.618622 timesync vgsvcTimeSyncWorker: Radical host time change: 3 661 278 000 000ns (HostNow=1 763 985 599 796 000 000 ns HostLast=1 763 981 938 518 000 000 ns)
2025-11-24 07:00:17 (48223): Guest Log: 01:39:59.627002 timesync vgsvcTimeSyncWorker: Radical guest time change: 3 614 207 858 000ns (GuestNow=1 763 985 609 823 142 000 ns GuestLast=1 763 981 995 615 284 000 ns fSetTimeLastLoop=true )
2025-11-24 08:38:11 (48223): Status Report: Elapsed Time: '12000.000000'
2025-11-24 08:38:11 (48223): Status Report: CPU Time: '46347.220000'
2025-11-24 10:17:47 (48223): Status Report: Elapsed Time: '18000.000000'
2025-11-24 10:17:47 (48223): Status Report: CPU Time: '70140.900000'
2025-11-24 11:57:30 (48223): Status Report: Elapsed Time: '24000.000000'
2025-11-24 11:57:30 (48223): Status Report: CPU Time: '94050.070000'
2025-11-24 13:37:04 (48223): Status Report: Elapsed Time: '30000.000000'
2025-11-24 13:37:04 (48223): Status Report: CPU Time: '117920.710000'
2025-11-24 15:16:22 (48223): Status Report: Elapsed Time: '36000.000000'
2025-11-24 15:16:22 (48223): Status Report: CPU Time: '141481.580000'
2025-11-24 16:37:21 (48223): Guest Log:  *** Job finished ***
2025-11-24 16:37:21 (48223): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-24 16:37:21 (48223): Guest Log: 2025-11-24 21:35:57,635 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-24 16:37:21 (48223): Guest Log: 2025-11-24 21:35:57,636 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-24 16:37:21 (48223): Guest Log: 2025-11-24 21:36:22,233 | INFO     | [monitor] cgroup control has ended
2025-11-24 16:37:21 (48223): Guest Log: 2025-11-24 21:36:23,720 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139623350363968)>', '<ExcThread(monitor, started 139622902376192)>']
2025-11-24 16:37:21 (48223): Guest Log: 2025-11-24 21:36:23,797 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-24 16:37:21 (48223): Guest Log: 2025-11-24 21:36:23,797 | INFO     | [monitor] control thread has ended
2025-11-24 16:37:21 (48223): Guest Log: 2025-11-24 21:36:28,723 | INFO     | all workflow threads have been joined
2025-11-24 16:37:21 (48223): Guest Log: 2025-11-24 21:36:28,723 | INFO     | end of generic workflow (traces error code: 0)
2025-11-24 16:37:21 (48223): Guest Log: 2025-11-24 21:36:28,723 | INFO     | traces error code: 0
2025-11-24 16:37:21 (48223): Guest Log: 2025-11-24 21:36:28,723 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-24 16:37:21 (48223): Guest Log: 2025-11-24 21:36:28,919 [wrapper] ==== pilot stdout END ====
2025-11-24 16:37:21 (48223): Guest Log: 2025-11-24 21:36:28,929 [wrapper] ==== wrapper stdout RESUME ====
2025-11-24 16:37:21 (48223): Guest Log: 2025-11-24 21:36:28,940 [wrapper] pilotpid: 6001
2025-11-24 16:37:21 (48223): Guest Log: 2025-11-24 21:36:28,950 [wrapper] Pilot exit status: 0
2025-11-24 16:37:21 (48223): Guest Log: 2025-11-24 21:36:28,982 [wrapper] pandaids: 6895336347
2025-11-24 16:37:21 (48223): Guest Log: 2025-11-24 21:36:29,049 [wrapper] cleanup supervisor_pilot 20719 6002
2025-11-24 16:37:21 (48223): Guest Log: 2025-11-24 21:36:29,056 [wrapper] Test setup, not cleaning
2025-11-24 16:37:21 (48223): Guest Log: 2025-11-24 21:36:29,066 [wrapper] apfmon messages muted
2025-11-24 16:37:21 (48223): Guest Log: 2025-11-24 21:36:29,076 [wrapper] ==== wrapper stdout END ====
2025-11-24 16:37:21 (48223): Guest Log: 2025-11-24 21:36:29,088 [wrapper] ==== wrapper stderr END ====
2025-11-24 16:37:21 (48223): Guest Log:  *** Error codes and diagnostics ***
2025-11-24 16:37:21 (48223): Guest Log:     "exeErrorCode": 0,
2025-11-24 16:37:21 (48223): Guest Log:     "exeErrorDiag": "",
2025-11-24 16:37:21 (48223): Guest Log:     "pilotErrorCode": 0,
2025-11-24 16:37:21 (48223): Guest Log:     "pilotErrorDiag": "",
2025-11-24 16:37:21 (48223): Guest Log:  *** Listing of results directory ***
2025-11-24 16:37:21 (48223): Guest Log: total 933084
2025-11-24 16:37:21 (48223): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 22 05:12 pilot3.tar.gz
2025-11-24 16:37:21 (48223): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 22 05:14 queuedata.json
2025-11-24 16:37:21 (48223): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 22 05:15 runpilot2-wrapper.sh
2025-11-24 16:37:21 (48223): Guest Log: -rw-r-----. 1 atlas atlas     15847 Nov 24 09:20 start_atlas.sh
2025-11-24 16:37:21 (48223): Guest Log: -rw-r-----. 1 atlas atlas    590099 Nov 24 09:20 input.tar.gz
2025-11-24 16:37:21 (48223): Guest Log: -rw-r--r--. 1 atlas atlas      8369 Nov 24 09:20 init_data.xml
2025-11-24 16:37:21 (48223): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 24 09:20 EVNT.47483658._000275.pool.root.1 -> /data/./ATLAS.root_0
2025-11-24 16:37:21 (48223): Guest Log: -rw-r--r--. 1 atlas atlas      2785 Nov 24 09:20 pandaJob.out
2025-11-24 16:37:21 (48223): Guest Log: -rw-------. 1 atlas atlas    989824 Nov 24 09:21 agis_schedconf.cvmfs.json
2025-11-24 16:37:21 (48223): Guest Log: drwx------. 5 atlas atlas      4096 Nov 24 09:21 pilot3
2025-11-24 16:37:21 (48223): Guest Log: -rw-------. 1 atlas atlas 938613211 Nov 24 21:34 HITS.47556137._002717.pool.root.1
2025-11-24 16:37:21 (48223): Guest Log: -rw-------. 1 atlas atlas      1041 Nov 24 21:35 memory_monitor_summary.json
2025-11-24 16:37:21 (48223): Guest Log: -rw-------. 1 atlas atlas   1516227 Nov 24 21:35 agis_ddmendpoints.agis.ALL.json
2025-11-24 16:37:21 (48223): Guest Log: -rw-------. 1 atlas atlas   1441283 Nov 24 21:35 log.47556137._002717.job.log.tgz.1
2025-11-24 16:37:21 (48223): Guest Log: -rw-------. 1 atlas atlas      8656 Nov 24 21:35 heartbeat.json
2025-11-24 16:37:21 (48223): Guest Log: -rw-------. 1 atlas atlas        97 Nov 24 21:35 pilot_heartbeat.json
2025-11-24 16:37:21 (48223): Guest Log: -rw-------. 1 atlas atlas      4877 Nov 24 21:36 pilotlog.txt
2025-11-24 16:37:21 (48223): Guest Log: -rw-------. 1 atlas atlas   5070592 Nov 24 21:36 log.47556137._002717.job.log.1
2025-11-24 16:37:21 (48223): Guest Log: -rw-------. 1 atlas atlas       353 Nov 24 21:36 output.list
2025-11-24 16:37:21 (48223): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 24 21:36 runtime_log
2025-11-24 16:37:21 (48223): Guest Log: -rw-------. 1 atlas atlas   6533120 Nov 24 21:36 result.tar.gz
2025-11-24 16:37:21 (48223): Guest Log: -rw-------. 1 atlas atlas       675 Nov 24 21:36 TCfKDmh9ug8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmAyHKDm5VaY5m.diag
2025-11-24 16:37:21 (48223): Guest Log: -rw-r--r--. 1 atlas atlas      8789 Nov 24 21:36 runtime_log.err
2025-11-24 16:37:21 (48223): Guest Log: Looking for outputfile HITS.47556137._002717.pool.root.1
2025-11-24 16:37:21 (48223): Guest Log: HITS file was successfully produced
2025-11-24 16:37:21 (48223): Guest Log: -rw-------. 1 atlas atlas 938613211 Nov 24 21:34 /home/atlas/RunAtlas/HITS.47556137._002717.pool.root.1
2025-11-24 16:37:22 (48223): Guest Log: Successfully finished the ATLAS job!
2025-11-24 16:37:22 (48223): Guest Log: Copying the results back to the shared directory!
2025-11-24 16:37:22 (48223): Guest Log:  *** Contents of shared directory: ***
2025-11-24 16:37:22 (48223): Guest Log: total 409892
2025-11-24 16:37:22 (48223): Guest Log: -rw-rw----. 1 root root 412569906 Nov 24 09:18 ATLAS.root_0
2025-11-24 16:37:22 (48223): Guest Log: -rw-rw-r--. 1 root root      8369 Nov 24 09:18 init_data.xml
2025-11-24 16:37:22 (48223): Guest Log: -rw-rw----. 1 root root    590099 Nov 24 09:18 input.tar.gz
2025-11-24 16:37:22 (48223): Guest Log: -rw-r--r--. 1 root root   6533120 Nov 24  2025 result.tar.gz
2025-11-24 16:37:22 (48223): Guest Log: -rw-rw----. 1 root root     15847 Nov 24 09:18 start_atlas.sh
2025-11-24 16:37:22 (48223): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-24 16:37:22 (48223): VM Completion File Detected.
2025-11-24 16:37:22 (48223): Powering off VM.
2025-11-24 16:37:22 (48223): Successfully stopped VM.
2025-11-24 16:37:22 (48223): Deregistering VM. (boinc_1b2517f55971002d, slot#3)
2025-11-24 16:37:22 (48223): Removing network bandwidth throttle group from VM.
2025-11-24 16:37:23 (48223): Removing VM from VirtualBox.
2025-11-24 16:37:28 (48223): called boinc_finish(0)

</stderr_txt>
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