Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:56:59 (7876): wrapper (7.7.26015): starting
12:56:59 (7876): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 12:56:59] Arguments: --nthreads 8
[2025-11-26 12:56:59] Threads: 8
[2025-11-26 12:56:59] Checking for CVMFS
[2025-11-26 12:56:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 12:57:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 12:57:00] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 12:57:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 12:57:01] 2.11.2.0 27863 285358 138424 153320 0 264 19876077 25165825 2224 130560 9 145547675 99.878 82463466 3719 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-26 12:57:01] CVMFS is ok
[2025-11-26 12:57:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 12:57:01] Checking for apptainer binary...
[2025-11-26 12:57:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 12:57:01] Running /usr/bin/apptainer --version
[2025-11-26 12:57:02] apptainer version 1.3.2-1.el7
[2025-11-26 12:57:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 12:57:13] cg-vwn495.simple-grid.lan
[2025-11-26 12:57:13] apptainer works
[2025-11-26 12:57:13] Set ATHENA_PROC_NUMBER=8
[2025-11-26 12:57:13] Set ATHENA_CORE_NUMBER=8
[2025-11-26 12:57:13] Starting ATLAS job with PandaID=6895352859
[2025-11-26 12:57:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 09:54:51]  *** The last 200 lines of the pilot log: ***
[2025-11-27 09:54:51] 2025-11-27 08:54:04,445 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 09:54:51] 2025-11-27 08:54:06,162 | INFO     | time since job start (75166s) is within the limit (172800.0s)
[2025-11-27 09:54:51] 2025-11-27 08:54:06,949 | INFO     | monitor loop #5087: job 0:6895352859 is in state 'finished'
[2025-11-27 09:54:51] 2025-11-27 08:54:06,950 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 09:54:51] 2025-11-27 08:54:08,171 | INFO     | time since job start (75168s) is within the limit (172800.0s)
[2025-11-27 09:54:51] 2025-11-27 08:54:09,454 | INFO     | monitor loop #5088: job 0:6895352859 is in state 'finished'
[2025-11-27 09:54:51] 2025-11-27 08:54:09,455 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 09:54:51] 2025-11-27 08:54:10,178 | INFO     | time since job start (75170s) is within the limit (172800.0s)
[2025-11-27 09:54:51] 2025-11-27 08:54:11,340 | INFO     | PID=11657 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 09:54:51] 2025-11-27 08:54:11,340 | INFO     | .. there are 9 such processes running
[2025-11-27 09:54:51] 2025-11-27 08:54:11,971 | INFO     | monitor loop #5089: job 0:6895352859 is in state 'finished'
[2025-11-27 09:54:51] 2025-11-27 08:54:11,972 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 09:54:51] 2025-11-27 08:54:12,345 | INFO     | time since job start (75172s) is within the limit (172800.0s)
[2025-11-27 09:54:51] 2025-11-27 08:54:14,353 | INFO     | time since job start (75174s) is within the limit (172800.0s)
[2025-11-27 09:54:51] 2025-11-27 08:54:14,475 | INFO     | monitor loop #5090: job 0:6895352859 is in state 'finished'
[2025-11-27 09:54:51] 2025-11-27 08:54:14,476 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 09:54:51] 2025-11-27 08:54:14,662 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 09:54:51] 2025-11-27 08:54:14,663 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2025-11-27 09:54:51] 2025-11-27 08:54:14,664 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-6895352859/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 09:54:51] 2025-11-27 08:54:14,665 | INFO     | extracted standard info from prmon json
[2025-11-27 09:54:51] 2025-11-27 08:54:14,665 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 09:54:51] 2025-11-27 08:54:14,665 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 09:54:51] 2025-11-27 08:54:14,685 | INFO     | fitting pss+swap vs Time
[2025-11-27 09:54:51] 2025-11-27 08:54:14,687 | INFO     | sum of square deviations: 567226329261.194
[2025-11-27 09:54:51] 2025-11-27 08:54:14,743 | INFO     | sum of deviations: 1771984627915.9631
[2025-11-27 09:54:51] 2025-11-27 08:54:14,744 | INFO     | mean x: 1764196243.03843
[2025-11-27 09:54:51] 2025-11-27 08:54:14,744 | INFO     | mean y: 2847087.02207686
[2025-11-27 09:54:51] 2025-11-27 08:54:14,744 | INFO     | intersect: -5508407348.862345
[2025-11-27 09:54:51] 2025-11-27 08:54:14,745 | INFO     | chi2: 18.422064179272976
[2025-11-27 09:54:51] 2025-11-27 08:54:14,747 | INFO     | sum of square deviations: 560298112278.28
[2025-11-27 09:54:51] 2025-11-27 08:54:14,831 | INFO     | sum of deviations: 2175755299526.8455
[2025-11-27 09:54:51] 2025-11-27 08:54:14,832 | INFO     | mean x: 1764196090.542693
[2025-11-27 09:54:51] 2025-11-27 08:54:14,832 | INFO     | mean y: 2855973.358784893
[2025-11-27 09:54:51] 2025-11-27 08:54:14,832 | INFO     | intersect: -6847888138.190857
[2025-11-27 09:54:51] 2025-11-27 08:54:14,833 | INFO     | chi2: 15.211443742201304
[2025-11-27 09:54:51] 2025-11-27 08:54:14,833 | INFO     | current chi2=15.211443742201304 (change=17.42812534918863 %)
[2025-11-27 09:54:51] 2025-11-27 08:54:14,834 | INFO     | right removable region: 1217
[2025-11-27 09:54:51] 2025-11-27 08:54:14,835 | INFO     | sum of square deviations: 560297337578.28
[2025-11-27 09:54:51] 2025-11-27 08:54:14,889 | INFO     | sum of deviations: 1262858308401.9404
[2025-11-27 09:54:51] 2025-11-27 08:54:14,890 | INFO     | mean x: 1764196395.542693
[2025-11-27 09:54:51] 2025-11-27 08:54:14,890 | INFO     | mean y: 2858291.84729064
[2025-11-27 09:54:51] 2025-11-27 08:54:14,890 | INFO     | intersect: -3973476997.185879
[2025-11-27 09:54:51] 2025-11-27 08:54:14,891 | INFO     | chi2: 13.899256568037591
[2025-11-27 09:54:51] 2025-11-27 08:54:14,891 | INFO     | current chi2=13.899256568037591 (change=24.55103601432506 %)
[2025-11-27 09:54:51] 2025-11-27 08:54:14,891 | INFO     | left removable region: 10
[2025-11-27 09:54:51] 2025-11-27 08:54:14,893 | INFO     | sum of square deviations: 545253721399.91766
[2025-11-27 09:54:51] 2025-11-27 08:54:14,940 | INFO     | sum of deviations: 1499112259151.5903
[2025-11-27 09:54:51] 2025-11-27 08:54:14,940 | INFO     | mean x: 1764196365.0505385
[2025-11-27 09:54:51] 2025-11-27 08:54:14,940 | INFO     | mean y: 2875177.9411764704
[2025-11-27 09:54:51] 2025-11-27 08:54:14,940 | INFO     | intersect: -4847579380.365551
[2025-11-27 09:54:51] 2025-11-27 08:54:14,942 | INFO     | chi2: 8.339177794871588
[2025-11-27 09:54:51] 2025-11-27 08:54:14,942 | INFO     | current memory leak: 2.75 B/s (using 1207 data points, chi2=8.34)
[2025-11-27 09:54:51] 2025-11-27 08:54:14,943 | INFO     | could have reported an average CPU frequency of 2249 MHz (42 samples)
[2025-11-27 09:54:51] 2025-11-27 08:54:14,943 | INFO     | ..............................
[2025-11-27 09:54:51] 2025-11-27 08:54:14,943 | INFO     | . Timing measurements:
[2025-11-27 09:54:51] 2025-11-27 08:54:14,943 | INFO     | . get job = 0 s
[2025-11-27 09:54:51] 2025-11-27 08:54:14,943 | INFO     | . initial setup = 9 s
[2025-11-27 09:54:51] 2025-11-27 08:54:14,944 | INFO     | . payload setup = 148 s
[2025-11-27 09:54:51] 2025-11-27 08:54:14,944 | INFO     | . stage-in = 0 s
[2025-11-27 09:54:51] 2025-11-27 08:54:14,944 | INFO     | . payload execution = 74728 s
[2025-11-27 09:54:51] 2025-11-27 08:54:14,944 | INFO     | . stage-out = 6 s
[2025-11-27 09:54:51] 2025-11-27 08:54:14,944 | INFO     | . log creation = 2 s
[2025-11-27 09:54:51] 2025-11-27 08:54:14,944 | INFO     | ..............................
[2025-11-27 09:54:51] 2025-11-27 08:54:15,052 | INFO     | 
[2025-11-27 09:54:51] 2025-11-27 08:54:15,053 | INFO     | job summary report
[2025-11-27 09:54:51] 2025-11-27 08:54:15,053 | INFO     | --------------------------------------------------
[2025-11-27 09:54:51] 2025-11-27 08:54:15,053 | INFO     | PanDA job id: 6895352859
[2025-11-27 09:54:51] 2025-11-27 08:54:15,053 | INFO     | task id: 47556137
[2025-11-27 09:54:51] 2025-11-27 08:54:15,053 | INFO     | errors: (none)
[2025-11-27 09:54:51] 2025-11-27 08:54:15,053 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 09:54:51] 2025-11-27 08:54:15,053 | INFO     | pilot state: finished 
[2025-11-27 09:54:51] 2025-11-27 08:54:15,053 | INFO     | transexitcode: 0
[2025-11-27 09:54:51] 2025-11-27 08:54:15,053 | INFO     | exeerrorcode: 0
[2025-11-27 09:54:51] 2025-11-27 08:54:15,053 | INFO     | exeerrordiag: 
[2025-11-27 09:54:51] 2025-11-27 08:54:15,053 | INFO     | exitcode: 0
[2025-11-27 09:54:51] 2025-11-27 08:54:15,054 | INFO     | exitmsg: OK
[2025-11-27 09:54:51] 2025-11-27 08:54:15,054 | INFO     | cpuconsumptiontime: 282287 s
[2025-11-27 09:54:51] 2025-11-27 08:54:15,054 | INFO     | nevents: 1000
[2025-11-27 09:54:51] 2025-11-27 08:54:15,054 | INFO     | neventsw: 0
[2025-11-27 09:54:51] 2025-11-27 08:54:15,054 | INFO     | pid: 18261
[2025-11-27 09:54:51] 2025-11-27 08:54:15,054 | INFO     | pgrp: 18261
[2025-11-27 09:54:51] 2025-11-27 08:54:15,054 | INFO     | corecount: 8
[2025-11-27 09:54:51] 2025-11-27 08:54:15,054 | INFO     | event service: False
[2025-11-27 09:54:51] 2025-11-27 08:54:15,054 | INFO     | sizes: {0: 2284083, 1: 2284338, 12: 2284338, 23: 2284366, 34: 2284394, 44: 2284422, 55: 2284578, 66: 2284606, 76: 2284634, 87: 2284690, 96: 2284980, 98: 2285288, 7
[2025-11-27 09:54:51] 2025-11-27 08:54:15,054 | INFO     | --------------------------------------------------
[2025-11-27 09:54:51] 2025-11-27 08:54:15,054 | INFO     | 
[2025-11-27 09:54:51] 2025-11-27 08:54:15,054 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-11-27 09:54:51] 2025-11-27 08:54:15,510 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 09:54:51] 2025-11-27 08:54:15,510 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 09:54:51] 2025-11-27 08:54:15,510 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 09:54:51] 2025-11-27 08:54:15,511 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 09:54:51] 2025-11-27 08:54:15,511 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 09:54:51] 2025-11-27 08:54:15,511 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 09:54:51] 2025-11-27 08:54:15,511 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 09:54:51] 2025-11-27 08:54:15,511 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 09:54:51] 2025-11-27 08:54:15,511 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 09:54:51] 2025-11-27 08:54:15,511 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 09:54:51] 2025-11-27 08:54:15,511 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 09:54:51] 2025-11-27 08:54:15,511 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 09:54:51] 2025-11-27 08:54:15,511 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 09:54:51] 2025-11-27 08:54:15,511 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 09:54:51] 2025-11-27 08:54:15,512 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 09:54:51] 2025-11-27 08:54:15,512 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 09:54:51] 2025-11-27 08:54:15,512 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 09:54:51] 2025-11-27 08:54:15,512 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 09:54:51] 2025-11-27 08:54:15,512 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 09:54:51] 2025-11-27 08:54:15,512 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 09:54:51] 2025-11-27 08:54:15,512 | INFO     | job 6895352859 has completed (purged errors)
[2025-11-27 09:54:51] 2025-11-27 08:54:15,513 | INFO     | overall cleanup function is called
[2025-11-27 09:54:51] 2025-11-27 08:54:16,527 | INFO     | --- collectZombieJob: --- 10, [18261]
[2025-11-27 09:54:51] 2025-11-27 08:54:16,528 | INFO     | zombie collector waiting for pid 18261
[2025-11-27 09:54:51] 2025-11-27 08:54:16,528 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 09:54:51] 2025-11-27 08:54:16,528 | INFO     | collected zombie processes
[2025-11-27 09:54:51] 2025-11-27 08:54:16,528 | INFO     | will attempt to kill all subprocesses of pid=18261
[2025-11-27 09:54:51] 2025-11-27 08:54:16,636 | INFO     | process IDs to be killed: [18261] (in reverse order)
[2025-11-27 09:54:51] 2025-11-27 08:54:17,669 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 09:54:51] 2025-11-27 08:54:17,669 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 09:54:51] 2025-11-27 08:54:17,672 | INFO     | did not find any defunct processes belonging to 18261
[2025-11-27 09:54:51] 2025-11-27 08:54:17,674 | INFO     | did not find any defunct processes belonging to 18261
[2025-11-27 09:54:51] 2025-11-27 08:54:17,706 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 09:54:51] 2025-11-27 08:54:17,706 | INFO     | ready for new job
[2025-11-27 09:54:51] 2025-11-27 08:54:17,706 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 09:54:51] 2025-11-27 08:54:17,710 | INFO     | ***************************************
[2025-11-27 09:54:51] 2025-11-27 08:54:17,710 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 09:54:51] 2025-11-27 08:54:17,710 | INFO     | ***************************************
[2025-11-27 09:54:51] 2025-11-27 08:54:17,710 | INFO     | 
[2025-11-27 09:54:51] 2025-11-27 08:54:17,711 | INFO     | pilot is running in a VM
[2025-11-27 09:54:51] 2025-11-27 08:54:17,711 | INFO     | architecture information:
[2025-11-27 09:54:51] 2025-11-27 08:54:17,719 | INFO     | executing command: cat /etc/os-release
[2025-11-27 09:54:51] 2025-11-27 08:54:17,899 | INFO     | cat /etc/os-release:
[2025-11-27 09:54:51] NAME="CentOS Linux"
[2025-11-27 09:54:51] VERSION="7 (Core)"
[2025-11-27 09:54:51] ID="centos"
[2025-11-27 09:54:51] ID_LIKE="rhel fedora"
[2025-11-27 09:54:51] VERSION_ID="7"
[2025-11-27 09:54:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 09:54:51] ANSI_COLOR="0;31"
[2025-11-27 09:54:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 09:54:51] HOME_URL="https://www.centos.org/"
[2025-11-27 09:54:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 09:54:51] 
[2025-11-27 09:54:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 09:54:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 09:54:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 09:54:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 09:54:51] 
[2025-11-27 09:54:51] 2025-11-27 08:54:17,899 | INFO     | ***************************************
[2025-11-27 09:54:51] 2025-11-27 08:54:18,403 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-11-27 09:54:51] 2025-11-27 08:54:18,610 | INFO     | sufficient remaining disk space (495533948928 B)
[2025-11-27 09:54:51] 2025-11-27 08:54:18,610 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 09:54:51] 2025-11-27 08:54:18,610 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 09:54:51] 2025-11-27 08:54:18,611 | INFO     | update_server=False
[2025-11-27 09:54:51] 2025-11-27 08:54:18,611 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 09:54:51] 2025-11-27 08:54:18,611 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 09:54:51] 2025-11-27 08:54:18,612 | INFO     | aborting loop
[2025-11-27 09:54:51] 2025-11-27 08:54:18,861 | INFO     | all data control threads have been joined
[2025-11-27 09:54:51] 2025-11-27 08:54:19,585 | INFO     | all payload control threads have been joined
[2025-11-27 09:54:51] 2025-11-27 08:54:19,617 | INFO     | [job] retrieve thread has finished
[2025-11-27 09:54:51] 2025-11-27 08:54:19,618 | INFO     | [job] job monitor thread has finished
[2025-11-27 09:54:51] 2025-11-27 08:54:19,743 | INFO     | [job] validate thread has finished
[2025-11-27 09:54:51] 2025-11-27 08:54:19,786 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 09:54:51] 2025-11-27 08:54:19,836 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 09:54:51] 2025-11-27 08:54:19,868 | INFO     | [data] control thread has finished
[2025-11-27 09:54:51] 2025-11-27 08:54:19,935 | INFO     | [payload] failed_post thread has finished
[2025-11-27 09:54:51] 2025-11-27 08:54:20,070 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 09:54:51] 2025-11-27 08:54:20,124 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 09:54:51] 2025-11-27 08:54:20,128 | INFO     | [data] copytool_in thread has finished
[2025-11-27 09:54:51] 2025-11-27 08:54:20,302 | INFO     | all job control threads have been joined
[2025-11-27 09:54:51] 2025-11-27 08:54:20,591 | INFO     | [payload] control thread has finished
[2025-11-27 09:54:51] 2025-11-27 08:54:20,816 | INFO     | [payload] validate_post thread has finished
[2025-11-27 09:54:51] 2025-11-27 08:54:20,831 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 09:54:51] 2025-11-27 08:54:21,011 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 09:54:51] 2025-11-27 08:54:21,076 | INFO     | [job] queue monitor thread has finished
[2025-11-27 09:54:51] 2025-11-27 08:54:21,191 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 09:54:51] 2025-11-27 08:54:21,308 | INFO     | [job] control thread has finished
[2025-11-27 09:54:51] 2025-11-27 08:54:21,843 | INFO     | [data] copytool_out thread has finished
[2025-11-27 09:54:51] 2025-11-27 08:54:25,200 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 09:54:51] 2025-11-27 08:54:31,489 | INFO     | [monitor] cgroup control has ended
[2025-11-27 09:54:51] 2025-11-27 08:54:32,039 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140138962294592)>', '<ExcThread(monitor, started 140138524956416)>']
[2025-11-27 09:54:51] 2025-11-27 08:54:37,064 | INFO     | all workflow threads have been joined
[2025-11-27 09:54:51] 2025-11-27 08:54:37,065 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 09:54:51] 2025-11-27 08:54:37,065 | INFO     | traces error code: 0
[2025-11-27 09:54:51] 2025-11-27 08:54:37,065 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 09:54:51] 2025-11-27 08:54:47,507 | INFO     | PID=11657 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 09:54:51] 2025-11-27 08:54:47,507 | INFO     | .. there are 9 such processes running
[2025-11-27 09:54:51] 2025-11-27 08:54:47,508 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 09:54:51] 2025-11-27 08:54:47,508 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 09:54:51] 2025-11-27 08:54:47,508 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 09:54:51] 2025-11-27 08:54:47,508 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 09:54:51] 2025-11-27 08:54:47,508 | INFO     | [monitor] control thread has ended
[2025-11-27 09:54:51] 2025-11-27 08:54:47,838 [wrapper] ==== pilot stdout END ====
[2025-11-27 09:54:51] 2025-11-27 08:54:47,901 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 09:54:51] 2025-11-27 08:54:47,952 [wrapper] pilotpid: 11657
[2025-11-27 09:54:51] 2025-11-27 08:54:48,061 [wrapper] Pilot exit status: 0
[2025-11-27 09:54:51] 2025-11-27 08:54:48,442 [wrapper] pandaids: 6895352859
[2025-11-27 09:54:51] 2025-11-27 08:54:49,349 [wrapper] cleanup supervisor_pilot  6407 11658
[2025-11-27 09:54:51] 2025-11-27 08:54:49,468 [wrapper] Test setup, not cleaning
[2025-11-27 09:54:51] 2025-11-27 08:54:49,567 [wrapper] apfmon messages muted
[2025-11-27 09:54:51] 2025-11-27 08:54:49,655 [wrapper] ==== wrapper stdout END ====
[2025-11-27 09:54:51] 2025-11-27 08:54:49,725 [wrapper] ==== wrapper stderr END ====
[2025-11-27 09:54:51]  *** Error codes and diagnostics ***
[2025-11-27 09:54:51]     "exeErrorCode": 0,
[2025-11-27 09:54:51]     "exeErrorDiag": "",
[2025-11-27 09:54:51]     "pilotErrorCode": 0,
[2025-11-27 09:54:51]     "pilotErrorDiag": "",
[2025-11-27 09:54:51]  *** Listing of results directory ***
[2025-11-27 09:54:51] total 1318984
[2025-11-27 09:54:51] -rw-r--r--. 1 boinc boinc    576529 Nov 23 04:47 pilot3.tar.gz
[2025-11-27 09:54:51] -rwx------. 1 boinc boinc     36292 Nov 23 05:27 runpilot2-wrapper.sh
[2025-11-27 09:54:51] -rw-r--r--. 1 boinc boinc      5112 Nov 23 05:27 queuedata.json
[2025-11-27 09:54:51] -rw-r--r--. 1 boinc boinc       100 Nov 26 12:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 09:54:51] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 12:56 run_atlas
[2025-11-27 09:54:51] -rw-r--r--. 1 boinc boinc       105 Nov 26 12:56 job.xml
[2025-11-27 09:54:51] -rw-r--r--. 2 boinc boinc 409020898 Nov 26 12:56 EVNT.47483658._000608.pool.root.1
[2025-11-27 09:54:51] -rw-r--r--. 2 boinc boinc     15847 Nov 26 12:56 start_atlas.sh
[2025-11-27 09:54:51] drwxrwx--x. 2 boinc boinc        68 Nov 26 12:56 shared
[2025-11-27 09:54:51] -rw-r--r--. 2 boinc boinc    590097 Nov 26 12:56 input.tar.gz
[2025-11-27 09:54:51] -rw-r--r--. 1 boinc boinc      6392 Nov 26 12:56 init_data.xml
[2025-11-27 09:54:51] -rw-r--r--. 1 boinc boinc         0 Nov 26 12:56 boinc_lockfile
[2025-11-27 09:54:51] -rw-r--r--. 1 boinc boinc      2783 Nov 26 12:57 pandaJob.out
[2025-11-27 09:54:51] -rw-------. 1 boinc boinc    991830 Nov 26 13:01 agis_schedconf.cvmfs.json
[2025-11-27 09:54:51] drwx------. 5 boinc boinc      4096 Nov 26 13:01 pilot3
[2025-11-27 09:54:51] -rw-r--r--. 1 boinc boinc       533 Nov 27 09:30 boinc_task_state.xml
[2025-11-27 09:54:51] -rw-------. 1 boinc boinc 912958693 Nov 27 09:51 HITS.47556137._006031.pool.root.1
[2025-11-27 09:54:51] -rw-------. 1 boinc boinc      1029 Nov 27 09:52 memory_monitor_summary.json
[2025-11-27 09:54:51] -rw-------. 1 boinc boinc   1516240 Nov 27 09:52 agis_ddmendpoints.agis.ALL.json
[2025-11-27 09:54:51] -rw-------. 1 boinc boinc   2346863 Nov 27 09:52 log.47556137._006031.job.log.tgz.1
[2025-11-27 09:54:51] -rw-------. 1 boinc boinc      7940 Nov 27 09:54 heartbeat.json
[2025-11-27 09:54:51] -rw-r--r--. 1 boinc boinc      8192 Nov 27 09:54 boinc_mmap_file
[2025-11-27 09:54:51] -rw-r--r--. 1 boinc boinc        29 Nov 27 09:54 wrapper_checkpoint.txt
[2025-11-27 09:54:51] -rw-------. 1 boinc boinc       820 Nov 27 09:54 pilotlog.txt
[2025-11-27 09:54:51] -rw-------. 1 boinc boinc        95 Nov 27 09:54 pilot_heartbeat.json
[2025-11-27 09:54:51] -rw-------. 1 boinc boinc  10037822 Nov 27 09:54 log.47556137._006031.job.log.1
[2025-11-27 09:54:51] -rw-------. 1 boinc boinc       353 Nov 27 09:54 output.list
[2025-11-27 09:54:51] -rw-r--r--. 1 boinc boinc       620 Nov 27 09:54 runtime_log
[2025-11-27 09:54:51] -rw-------. 1 boinc boinc  12400640 Nov 27 09:54 result.tar.gz
[2025-11-27 09:54:51] -rw-r--r--. 1 boinc boinc      8833 Nov 27 09:54 runtime_log.err
[2025-11-27 09:54:51] -rw-------. 1 boinc boinc       662 Nov 27 09:54 QrQLDm7rGh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmrQIKDm61ngQo.diag
[2025-11-27 09:54:51] -rw-r--r--. 1 boinc boinc     21515 Nov 27 09:54 stderr.txt
[2025-11-27 09:54:51] HITS file was successfully produced:
[2025-11-27 09:54:51] -rw-------. 1 boinc boinc 912958693 Nov 27 09:51 shared/HITS.pool.root.1
[2025-11-27 09:54:51]  *** Contents of shared directory: ***
[2025-11-27 09:54:51] total 1303708
[2025-11-27 09:54:51] -rw-r--r--. 2 boinc boinc 409020898 Nov 26 12:56 ATLAS.root_0
[2025-11-27 09:54:51] -rw-r--r--. 2 boinc boinc     15847 Nov 26 12:56 start_atlas.sh
[2025-11-27 09:54:51] -rw-r--r--. 2 boinc boinc    590097 Nov 26 12:56 input.tar.gz
[2025-11-27 09:54:51] -rw-------. 1 boinc boinc 912958693 Nov 27 09:51 HITS.pool.root.1
[2025-11-27 09:54:51] -rw-------. 1 boinc boinc  12400640 Nov 27 09:54 result.tar.gz
09:54:53 (7876): run_atlas exited; CPU time 282704.797739
09:54:53 (7876): called boinc_finish(0)

</stderr_txt>
]]>

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