Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:54:11 (196557): wrapper (7.7.26015): starting
00:54:11 (196557): wrapper: running run_atlas (--nthreads 3)
[2025-11-24 00:54:11] Arguments: --nthreads 3
[2025-11-24 00:54:11] Threads: 3
[2025-11-24 00:54:11] Checking for CVMFS
[2025-11-24 00:54:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:54:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:54:11] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:54:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:54:11] 2.9.2.0 154488 8 49600 153226 3 88 34926514 36864001 0 130560 0 125232 100.000 1 1 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-24 00:54:11] CVMFS is ok
[2025-11-24 00:54:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 00:54:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 00:54:11] Further information can be found at the LHC@home message board.
[2025-11-24 00:54:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:54:11] Checking for apptainer binary...
[2025-11-24 00:54:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:54:11] Running /usr/bin/apptainer --version
[2025-11-24 00:54:12] apptainer version 1.4.1-1.1
[2025-11-24 00:54:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:54:12] thA335
[2025-11-24 00:54:12] apptainer works
[2025-11-24 00:54:12] Set ATHENA_PROC_NUMBER=3
[2025-11-24 00:54:12] Set ATHENA_CORE_NUMBER=3
[2025-11-24 00:54:12] Starting ATLAS job with PandaID=6895344258
[2025-11-24 00:54:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 00:58:30]  *** The last 200 lines of the pilot log: ***
[2025-11-24 00:58:30] 2025-11-23 23:57:38,688 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 00:58:30] 2025-11-23 23:57:38,688 | INFO     | update_server=False
[2025-11-24 00:58:30] 2025-11-23 23:57:38,688 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 00:58:30] 2025-11-23 23:57:38,688 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 00:58:30] 2025-11-23 23:57:38,763 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-24 00:58:30] 2025-11-23 23:57:38,764 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-24 00:58:30] 2025-11-23 23:57:38,764 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 00:58:30] 2025-11-23 23:57:38,764 | INFO     | will abort loop
[2025-11-24 00:58:30] 2025-11-23 23:57:38,766 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 00:58:30] 2025-11-23 23:57:39,000 | INFO     | all data control threads have been joined
[2025-11-24 00:58:30] 2025-11-23 23:57:39,325 | INFO     | all payload control threads have been joined
[2025-11-24 00:58:30] 2025-11-23 23:57:39,690 | INFO     | [job] queue monitor thread has finished
[2025-11-24 00:58:30] 2025-11-23 23:57:39,694 | INFO     | [job] retrieve thread has finished
[2025-11-24 00:58:30] 2025-11-23 23:57:39,770 | INFO     | [job] job monitor thread has finished
[2025-11-24 00:58:30] 2025-11-23 23:57:39,889 | INFO     | all job control threads have been joined
[2025-11-24 00:58:30] 2025-11-23 23:57:39,935 | INFO     | [payload] validate_post thread has finished
[2025-11-24 00:58:30] 2025-11-23 23:57:40,006 | INFO     | [data] control thread has finished
[2025-11-24 00:58:30] 2025-11-23 23:57:40,140 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 00:58:30] 2025-11-23 23:57:40,181 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 00:58:30] 2025-11-23 23:57:40,304 | INFO     | [job] validate thread has finished
[2025-11-24 00:58:30] 2025-11-23 23:57:40,332 | INFO     | [payload] control thread has finished
[2025-11-24 00:58:30] 2025-11-23 23:57:40,374 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 00:58:30] 2025-11-23 23:57:40,423 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 00:58:30] 2025-11-23 23:57:40,664 | INFO     | [payload] failed_post thread has finished
[2025-11-24 00:58:30] 2025-11-23 23:57:40,772 | INFO     | [data] copytool_out thread has finished
[2025-11-24 00:58:30] 2025-11-23 23:57:40,820 | INFO     | [data] copytool_in thread has finished
[2025-11-24 00:58:30] 2025-11-23 23:57:40,895 | INFO     | [job] control thread has finished
[2025-11-24 00:58:30] 2025-11-23 23:57:40,987 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 00:58:30] 2025-11-23 23:57:44,995 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 00:58:30] 2025-11-23 23:58:08,423 | INFO     | PID=200307 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-24 00:58:30] 2025-11-23 23:58:08,423 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 00:58:30] 2025-11-23 23:58:08,423 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 00:58:30] 2025-11-23 23:58:08,423 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 00:58:30] 2025-11-23 23:58:23,562 | INFO     | [monitor] cgroup control has ended
[2025-11-24 00:58:30] 2025-11-23 23:58:24,881 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139929225410368)>', '<ExcThread(monitor, started 139928734254848)>']
[2025-11-24 00:58:30] 2025-11-23 23:58:25,512 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 00:58:30] 2025-11-23 23:58:25,512 | INFO     | [monitor] control thread has ended
[2025-11-24 00:58:30] 2025-11-23 23:58:29,907 | INFO     | all workflow threads have been joined
[2025-11-24 00:58:30] 2025-11-23 23:58:29,907 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 00:58:30] 2025-11-23 23:58:29,908 | INFO     | traces error code: 0
[2025-11-24 00:58:30] 2025-11-23 23:58:29,908 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 00:58:30] 2025-11-23 23:58:29,953 [wrapper] ==== pilot stdout END ====
[2025-11-24 00:58:30] 2025-11-23 23:58:29,956 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 00:58:30] 2025-11-23 23:58:29,959 [wrapper] pilotpid: 200307
[2025-11-24 00:58:30] 2025-11-23 23:58:29,962 [wrapper] Pilot exit status: 0
[2025-11-24 00:58:30] 2025-11-23 23:58:29,969 [wrapper] pandaids: 6895344258
[2025-11-24 00:58:30] 2025-11-23 23:58:29,985 [wrapper] cleanup supervisor_pilot  200313 200308
[2025-11-24 00:58:30] 2025-11-23 23:58:29,988 [wrapper] Test setup, not cleaning
[2025-11-24 00:58:30] 2025-11-23 23:58:29,990 [wrapper] apfmon messages muted
[2025-11-24 00:58:30] 2025-11-23 23:58:29,993 [wrapper] ==== wrapper stdout END ====
[2025-11-24 00:58:30] 2025-11-23 23:58:29,995 [wrapper] ==== wrapper stderr END ====
[2025-11-24 00:58:30]  *** Error codes and diagnostics ***
[2025-11-24 00:58:30]     "exeErrorCode": 65,
[2025-11-24 00:58:30]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-24 00:58:30]     "pilotErrorCode": 1305,
[2025-11-24 00:58:30]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-24 00:58:30]  *** Listing of results directory ***
[2025-11-24 00:58:30] total 402972
[2025-11-24 00:58:30] -rw-r--r-- 1 boinc boinc    576529 Nov 22 17:54 pilot3.tar.gz
[2025-11-24 00:58:30] -rw-r--r-- 1 boinc boinc      5112 Nov 22 17:55 queuedata.json
[2025-11-24 00:58:30] -rwx------ 1 boinc boinc     36292 Nov 22 17:56 runpilot2-wrapper.sh
[2025-11-24 00:58:30] -rw-r--r-- 1 boinc boinc       100 Nov 24 00:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 00:58:30] -rwxr-xr-x 1 boinc boinc      7986 Nov 24 00:54 run_atlas
[2025-11-24 00:58:30] -rw-r--r-- 1 boinc boinc       105 Nov 24 00:54 job.xml
[2025-11-24 00:58:30] -rw-r--r-- 2 boinc boinc 408453436 Nov 24 00:54 EVNT.47483658._000440.pool.root.1
[2025-11-24 00:58:30] drwxrwx--x 2 boinc boinc      4096 Nov 24 00:54 shared
[2025-11-24 00:58:30] -rw-r--r-- 2 boinc boinc    590100 Nov 24 00:54 input.tar.gz
[2025-11-24 00:58:30] -rw-r--r-- 2 boinc boinc     15847 Nov 24 00:54 start_atlas.sh
[2025-11-24 00:58:30] -rw-r--r-- 1 boinc boinc         0 Nov 24 00:54 boinc_setup_complete
[2025-11-24 00:58:30] -rw-r--r-- 1 boinc boinc      6195 Nov 24 00:54 init_data.xml
[2025-11-24 00:58:30] -rw-r--r-- 1 boinc boinc         0 Nov 24 00:54 boinc_lockfile
[2025-11-24 00:58:30] -rw-r--r-- 1 boinc boinc      2784 Nov 24 00:54 pandaJob.out
[2025-11-24 00:58:30] -rw------- 1 boinc boinc    989786 Nov 24 00:54 agis_schedconf.cvmfs.json
[2025-11-24 00:58:30] -rw------- 1 boinc boinc   1526164 Nov 24 00:54 agis_ddmendpoints.agis.ALL.json
[2025-11-24 00:58:30] drwx------ 5 boinc boinc      4096 Nov 24 00:54 pilot3
[2025-11-24 00:58:30] -rw-r--r-- 1 boinc boinc       522 Nov 24 00:55 boinc_task_state.xml
[2025-11-24 00:58:30] -rw------- 1 boinc boinc       958 Nov 24 00:55 memory_monitor_summary.json
[2025-11-24 00:58:30] -rw------- 1 boinc boinc     55679 Nov 24 00:55 log.47556137._004353.job.log.tgz.1
[2025-11-24 00:58:30] -rw------- 1 boinc boinc        95 Nov 24 00:57 pilot_heartbeat.json
[2025-11-24 00:58:30] -rw------- 1 boinc boinc      8404 Nov 24 00:57 heartbeat.json
[2025-11-24 00:58:30] -rw-r--r-- 1 boinc boinc        22 Nov 24 00:58 wrapper_checkpoint.txt
[2025-11-24 00:58:30] -rw-r--r-- 1 boinc boinc      8192 Nov 24 00:58 boinc_mmap_file
[2025-11-24 00:58:30] -rw------- 1 boinc boinc      4937 Nov 24 00:58 pilotlog.txt
[2025-11-24 00:58:30] -rw------- 1 boinc boinc     93597 Nov 24 00:58 log.47556137._004353.job.log.1
[2025-11-24 00:58:30] -rw------- 1 boinc boinc       186 Nov 24 00:58 output.list
[2025-11-24 00:58:30] -rw-r--r-- 1 boinc boinc       620 Nov 24 00:58 runtime_log
[2025-11-24 00:58:30] -rw------- 1 boinc boinc    163840 Nov 24 00:58 result.tar.gz
[2025-11-24 00:58:30] -rw-r--r-- 1 boinc boinc      8744 Nov 24 00:58 runtime_log.err
[2025-11-24 00:58:30] -rw------- 1 boinc boinc       648 Nov 24 00:58 44dMDmk55g8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm9HKKDmzeKNYn.diag
[2025-11-24 00:58:30] -rw-r--r-- 1 boinc boinc      8108 Nov 24 00:58 stderr.txt
[2025-11-24 00:58:30] No HITS result produced
[2025-11-24 00:58:30]  *** Contents of shared directory: ***
[2025-11-24 00:58:30] total 399640
[2025-11-24 00:58:30] -rw-r--r-- 2 boinc boinc 408453436 Nov 24 00:54 ATLAS.root_0
[2025-11-24 00:58:30] -rw-r--r-- 2 boinc boinc    590100 Nov 24 00:54 input.tar.gz
[2025-11-24 00:58:30] -rw-r--r-- 2 boinc boinc     15847 Nov 24 00:54 start_atlas.sh
[2025-11-24 00:58:30] -rw------- 1 boinc boinc    163840 Nov 24 00:58 result.tar.gz
00:58:32 (196557): run_atlas exited; CPU time 31.901157
00:58:32 (196557): called boinc_finish(0)

</stderr_txt>
]]>

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