Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:52:39 (909509): wrapper (7.7.26015): starting
13:52:39 (909509): wrapper: running run_atlas (--nthreads 3)
[2025-11-26 13:52:39] Arguments: --nthreads 3
[2025-11-26 13:52:39] Threads: 3
[2025-11-26 13:52:39] Checking for CVMFS
[2025-11-26 13:52:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 13:52:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 13:52:39] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 13:52:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 13:52:40] 2.9.2.0 3581133 11371 99664 153322 2 81 28195658 36864000 0 130560 1 4214982 99.867 678159 1144 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 13:52:40] CVMFS is ok
[2025-11-26 13:52:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 13:52:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 13:52:40] Further information can be found at the LHC@home message board.
[2025-11-26 13:52:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 13:52:40] Checking for apptainer binary...
[2025-11-26 13:52:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 13:52:40] Running /usr/bin/apptainer --version
[2025-11-26 13:52:40] apptainer version 1.4.1-1.1
[2025-11-26 13:52:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 13:52:40] magicA250a
[2025-11-26 13:52:40] apptainer works
[2025-11-26 13:52:40] Set ATHENA_PROC_NUMBER=3
[2025-11-26 13:52:40] Set ATHENA_CORE_NUMBER=3
[2025-11-26 13:52:40] Starting ATLAS job with PandaID=6895344270
[2025-11-26 13:52:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 22:03:14]  *** The last 200 lines of the pilot log: ***
[2025-11-26 22:03:14] 2025-11-26 21:02:47,958 | INFO     | process IDs to be killed: [919671] (in reverse order)
[2025-11-26 22:03:14] 2025-11-26 21:02:47,982 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 22:03:14] 2025-11-26 21:02:47,982 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 22:03:14] 2025-11-26 21:02:47,983 | INFO     | did not find any defunct processes belonging to 919671
[2025-11-26 22:03:14] 2025-11-26 21:02:47,984 | INFO     | did not find any defunct processes belonging to 919671
[2025-11-26 22:03:14] 2025-11-26 21:02:47,985 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 22:03:14] 2025-11-26 21:02:47,985 | INFO     | ready for new job
[2025-11-26 22:03:14] 2025-11-26 21:02:47,985 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 22:03:14] 2025-11-26 21:02:47,986 | INFO     | ***************************************
[2025-11-26 22:03:14] 2025-11-26 21:02:47,986 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 22:03:14] 2025-11-26 21:02:47,986 | INFO     | ***************************************
[2025-11-26 22:03:14] 2025-11-26 21:02:47,986 | INFO     | 
[2025-11-26 22:03:14] 2025-11-26 21:02:47,987 | INFO     | architecture information:
[2025-11-26 22:03:14] 2025-11-26 21:02:47,987 | INFO     | executing command: cat /etc/os-release
[2025-11-26 22:03:14] 2025-11-26 21:02:47,995 | INFO     | cat /etc/os-release:
[2025-11-26 22:03:14] NAME="CentOS Linux"
[2025-11-26 22:03:14] VERSION="7 (Core)"
[2025-11-26 22:03:14] ID="centos"
[2025-11-26 22:03:14] ID_LIKE="rhel fedora"
[2025-11-26 22:03:14] VERSION_ID="7"
[2025-11-26 22:03:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 22:03:14] ANSI_COLOR="0;31"
[2025-11-26 22:03:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 22:03:14] HOME_URL="https://www.centos.org/"
[2025-11-26 22:03:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 22:03:14] 
[2025-11-26 22:03:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 22:03:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 22:03:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 22:03:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 22:03:14] 
[2025-11-26 22:03:14] 2025-11-26 21:02:47,995 | INFO     | ***************************************
[2025-11-26 22:03:14] 2025-11-26 21:02:48,499 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-26 22:03:14] 2025-11-26 21:02:48,510 | INFO     | sufficient remaining disk space (328514666496 B)
[2025-11-26 22:03:14] 2025-11-26 21:02:48,510 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 22:03:14] 2025-11-26 21:02:48,510 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 22:03:14] 2025-11-26 21:02:48,510 | INFO     | update_server=False
[2025-11-26 22:03:14] 2025-11-26 21:02:48,510 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 22:03:14] 2025-11-26 21:02:48,510 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-26 22:03:14] 2025-11-26 21:02:48,510 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 22:03:14] 2025-11-26 21:02:48,511 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 22:03:14] 2025-11-26 21:02:48,511 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 22:03:14] 2025-11-26 21:02:48,511 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 22:03:14] 2025-11-26 21:02:48,511 | INFO     | aborting loop
[2025-11-26 22:03:14] 2025-11-26 21:02:48,511 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 22:03:14] 2025-11-26 21:02:48,511 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 22:03:14] 2025-11-26 21:02:49,041 | INFO     | all data control threads have been joined
[2025-11-26 22:03:14] 2025-11-26 21:02:49,095 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 22:03:14] 2025-11-26 21:02:49,516 | INFO     | [job] retrieve thread has finished
[2025-11-26 22:03:14] 2025-11-26 21:02:49,516 | INFO     | [job] job monitor thread has finished
[2025-11-26 22:03:14] 2025-11-26 21:02:49,516 | INFO     | [job] queue monitor thread has finished
[2025-11-26 22:03:14] 2025-11-26 21:02:49,591 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 22:03:14] 2025-11-26 21:02:49,656 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 22:03:14] 2025-11-26 21:02:49,729 | INFO     | all payload control threads have been joined
[2025-11-26 22:03:14] 2025-11-26 21:02:49,803 | INFO     | [data] copytool_in thread has finished
[2025-11-26 22:03:14] 2025-11-26 21:02:49,865 | INFO     | all job control threads have been joined
[2025-11-26 22:03:14] 2025-11-26 21:02:49,930 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 22:03:14] 2025-11-26 21:02:50,047 | INFO     | [data] control thread has finished
[2025-11-26 22:03:14] 2025-11-26 21:02:50,246 | INFO     | [job] validate thread has finished
[2025-11-26 22:03:14] 2025-11-26 21:02:50,287 | INFO     | [payload] validate_post thread has finished
[2025-11-26 22:03:14] 2025-11-26 21:02:50,287 | INFO     | [payload] failed_post thread has finished
[2025-11-26 22:03:14] 2025-11-26 21:02:50,730 | INFO     | [payload] control thread has finished
[2025-11-26 22:03:14] 2025-11-26 21:02:50,868 | INFO     | [job] control thread has finished
[2025-11-26 22:03:14] 2025-11-26 21:02:51,101 | INFO     | [data] copytool_out thread has finished
[2025-11-26 22:03:14] 2025-11-26 21:02:52,517 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 22:03:14] 2025-11-26 21:02:58,811 | INFO     | job.realtimelogging is not enabled
[2025-11-26 22:03:14] 2025-11-26 21:02:59,817 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 22:03:14] 2025-11-26 21:03:08,812 | INFO     | [monitor] cgroup control has ended
[2025-11-26 22:03:14] 2025-11-26 21:03:09,754 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140348174464832)>', '<ExcThread(monitor, started 140347820717824)>']
[2025-11-26 22:03:14] 2025-11-26 21:03:10,626 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 22:03:14] 2025-11-26 21:03:10,626 | INFO     | [monitor] control thread has ended
[2025-11-26 22:03:14] 2025-11-26 21:03:14,756 | INFO     | all workflow threads have been joined
[2025-11-26 22:03:14] 2025-11-26 21:03:14,757 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 22:03:14] 2025-11-26 21:03:14,758 | INFO     | traces error code: 0
[2025-11-26 22:03:14] 2025-11-26 21:03:14,758 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 22:03:14] 2025-11-26 21:03:14,807 [wrapper] ==== pilot stdout END ====
[2025-11-26 22:03:14] 2025-11-26 21:03:14,810 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 22:03:14] 2025-11-26 21:03:14,812 [wrapper] pilotpid: 913227
[2025-11-26 22:03:14] 2025-11-26 21:03:14,814 [wrapper] Pilot exit status: 0
[2025-11-26 22:03:14] 2025-11-26 21:03:14,821 [wrapper] pandaids: 6895344270
[2025-11-26 22:03:14] 2025-11-26 21:03:14,836 [wrapper] cleanup supervisor_pilot  971159 913228
[2025-11-26 22:03:14] 2025-11-26 21:03:14,839 [wrapper] Test setup, not cleaning
[2025-11-26 22:03:14] 2025-11-26 21:03:14,841 [wrapper] apfmon messages muted
[2025-11-26 22:03:14] 2025-11-26 21:03:14,843 [wrapper] ==== wrapper stdout END ====
[2025-11-26 22:03:14] 2025-11-26 21:03:14,846 [wrapper] ==== wrapper stderr END ====
[2025-11-26 22:03:14]  *** Error codes and diagnostics ***
[2025-11-26 22:03:14]     "exeErrorCode": 0,
[2025-11-26 22:03:14]     "exeErrorDiag": "",
[2025-11-26 22:03:14]     "pilotErrorCode": 0,
[2025-11-26 22:03:14]     "pilotErrorDiag": "",
[2025-11-26 22:03:14]  *** Listing of results directory ***
[2025-11-26 22:03:14] total 1316216
[2025-11-26 22:03:14] -rw-r--r-- 1 boinc boinc    576529 Nov 22 17:54 pilot3.tar.gz
[2025-11-26 22:03:14] -rwx------ 1 boinc boinc     36292 Nov 22 17:57 runpilot2-wrapper.sh
[2025-11-26 22:03:14] -rw-r--r-- 1 boinc boinc      5112 Nov 22 17:57 queuedata.json
[2025-11-26 22:03:14] -rw-r--r-- 1 boinc boinc       100 Nov 26 13:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 22:03:14] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 13:52 run_atlas
[2025-11-26 22:03:14] -rw-r--r-- 1 boinc boinc       105 Nov 26 13:52 job.xml
[2025-11-26 22:03:14] -rw-r--r-- 2 boinc boinc 411037825 Nov 26 13:52 EVNT.47483658._000441.pool.root.1
[2025-11-26 22:03:14] -rw-r--r-- 2 boinc boinc    590098 Nov 26 13:52 input.tar.gz
[2025-11-26 22:03:14] -rw-r--r-- 2 boinc boinc     15847 Nov 26 13:52 start_atlas.sh
[2025-11-26 22:03:14] drwxrwx--x 2 boinc boinc      4096 Nov 26 13:52 shared
[2025-11-26 22:03:14] -rw-r--r-- 1 boinc boinc         0 Nov 26 13:52 boinc_setup_complete
[2025-11-26 22:03:14] -rw-r--r-- 1 boinc boinc      6443 Nov 26 13:52 init_data.xml
[2025-11-26 22:03:14] -rw-r--r-- 1 boinc boinc         0 Nov 26 13:52 boinc_lockfile
[2025-11-26 22:03:14] -rw-r--r-- 1 boinc boinc      2785 Nov 26 13:52 pandaJob.out
[2025-11-26 22:03:14] -rw------- 1 boinc boinc    991830 Nov 26 13:52 agis_schedconf.cvmfs.json
[2025-11-26 22:03:14] drwx------ 5 boinc boinc      4096 Nov 26 13:52 pilot3
[2025-11-26 22:03:14] -rw-r--r-- 1 boinc boinc       531 Nov 26 22:00 boinc_task_state.xml
[2025-11-26 22:03:14] -rw------- 1 boinc boinc        95 Nov 26 22:02 pilot_heartbeat.json
[2025-11-26 22:03:14] -rw------- 1 boinc boinc 922250513 Nov 26 22:02 HITS.47556137._004365.pool.root.1
[2025-11-26 22:03:14] -rw------- 1 boinc boinc      1028 Nov 26 22:02 memory_monitor_summary.json
[2025-11-26 22:03:14] -rw------- 1 boinc boinc   1516240 Nov 26 22:02 agis_ddmendpoints.agis.ALL.json
[2025-11-26 22:03:14] -rw------- 1 boinc boinc   1176395 Nov 26 22:02 log.47556137._004365.job.log.tgz.1
[2025-11-26 22:03:14] -rw------- 1 boinc boinc      8576 Nov 26 22:02 heartbeat.json
[2025-11-26 22:03:14] -rw-r--r-- 1 boinc boinc      8192 Nov 26 22:03 boinc_mmap_file
[2025-11-26 22:03:14] -rw-r--r-- 1 boinc boinc        28 Nov 26 22:03 wrapper_checkpoint.txt
[2025-11-26 22:03:14] -rw------- 1 boinc boinc      4628 Nov 26 22:03 pilotlog.txt
[2025-11-26 22:03:14] -rw------- 1 boinc boinc   4129071 Nov 26 22:03 log.47556137._004365.job.log.1
[2025-11-26 22:03:14] -rw------- 1 boinc boinc       353 Nov 26 22:03 output.list
[2025-11-26 22:03:14] -rw-r--r-- 1 boinc boinc       620 Nov 26 22:03 runtime_log
[2025-11-26 22:03:14] -rw------- 1 boinc boinc   5324800 Nov 26 22:03 result.tar.gz
[2025-11-26 22:03:14] -rw------- 1 boinc boinc       669 Nov 26 22:03 wiNNDmt65g8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmDIKKDmtODgbn.diag
[2025-11-26 22:03:14] -rw-r--r-- 1 boinc boinc      8918 Nov 26 22:03 runtime_log.err
[2025-11-26 22:03:14] -rw-r--r-- 1 boinc boinc     10321 Nov 26 22:03 stderr.txt
[2025-11-26 22:03:14] HITS file was successfully produced:
[2025-11-26 22:03:14] -rw------- 1 boinc boinc 922250513 Nov 26 22:02 shared/HITS.pool.root.1
[2025-11-26 22:03:14]  *** Contents of shared directory: ***
[2025-11-26 22:03:14] total 1307844
[2025-11-26 22:03:14] -rw-r--r-- 2 boinc boinc 411037825 Nov 26 13:52 ATLAS.root_0
[2025-11-26 22:03:14] -rw-r--r-- 2 boinc boinc    590098 Nov 26 13:52 input.tar.gz
[2025-11-26 22:03:14] -rw-r--r-- 2 boinc boinc     15847 Nov 26 13:52 start_atlas.sh
[2025-11-26 22:03:14] -rw------- 1 boinc boinc 922250513 Nov 26 22:02 HITS.pool.root.1
[2025-11-26 22:03:14] -rw------- 1 boinc boinc   5324800 Nov 26 22:03 result.tar.gz
22:03:16 (909509): run_atlas exited; CPU time 86933.391342
22:03:16 (909509): called boinc_finish(0)

</stderr_txt>
]]>

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