Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:18:14 (1719): wrapper (7.7.26015): starting
11:18:14 (1719): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 11:18:14] Arguments: --nthreads 8
[2025-11-26 11:18:14] Threads: 8
[2025-11-26 11:18:14] Checking for CVMFS
[2025-11-26 11:18:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 11:18:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 11:18:16] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 11:18:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 11:18:17] 2.11.2.0 9859 285096 136008 153318 0 59 24882435 25165824 1288 130560 12 147728808 99.888 85715593 3255 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-26 11:18:17] CVMFS is ok
[2025-11-26 11:18:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 11:18:17] Checking for apptainer binary...
[2025-11-26 11:18:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 11:18:17] Running /usr/bin/apptainer --version
[2025-11-26 11:18:17] apptainer version 1.3.2-1.el7
[2025-11-26 11:18:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 11:18:41] cg-vwn461.simple-grid.lan
[2025-11-26 11:18:41] apptainer works
[2025-11-26 11:18:41] Set ATHENA_PROC_NUMBER=8
[2025-11-26 11:18:41] Set ATHENA_CORE_NUMBER=8
[2025-11-26 11:18:41] Starting ATLAS job with PandaID=6895352793
[2025-11-26 11:18:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/18 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 08:48:44]  *** The last 200 lines of the pilot log: ***
[2025-11-27 08:48:44] 2025-11-27 07:47:49,871 | INFO     | time since job start (77130s) is within the limit (172800.0s)
[2025-11-27 08:48:44] 2025-11-27 07:47:50,659 | INFO     | monitor loop #5213: job 0:6895352793 is in state 'finished'
[2025-11-27 08:48:44] 2025-11-27 07:47:50,659 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 08:48:44] 2025-11-27 07:47:51,878 | INFO     | time since job start (77132s) is within the limit (172800.0s)
[2025-11-27 08:48:44] 2025-11-27 07:47:53,072 | INFO     | PID=5532 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-27 08:48:44] 2025-11-27 07:47:53,072 | INFO     | .. there are 9 such processes running
[2025-11-27 08:48:44] 2025-11-27 07:47:53,167 | INFO     | monitor loop #5214: job 0:6895352793 is in state 'finished'
[2025-11-27 08:48:44] 2025-11-27 07:47:53,167 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 08:48:44] 2025-11-27 07:47:54,074 | INFO     | time since job start (77135s) is within the limit (172800.0s)
[2025-11-27 08:48:44] 2025-11-27 07:47:55,676 | INFO     | monitor loop #5215: job 0:6895352793 is in state 'finished'
[2025-11-27 08:48:44] 2025-11-27 07:47:55,676 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 08:48:44] 2025-11-27 07:47:56,086 | INFO     | time since job start (77137s) is within the limit (172800.0s)
[2025-11-27 08:48:44] 2025-11-27 07:47:58,095 | INFO     | time since job start (77139s) is within the limit (172800.0s)
[2025-11-27 08:48:44] 2025-11-27 07:47:58,181 | INFO     | monitor loop #5216: job 0:6895352793 is in state 'finished'
[2025-11-27 08:48:44] 2025-11-27 07:47:58,181 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 08:48:44] 2025-11-27 07:48:00,102 | INFO     | time since job start (77141s) is within the limit (172800.0s)
[2025-11-27 08:48:44] 2025-11-27 07:48:00,374 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 08:48:44] 2025-11-27 07:48:00,375 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2250.0
[2025-11-27 08:48:44] 2025-11-27 07:48:00,376 | INFO     | using path: /var/lib/boinc/slots/18/PanDA_Pilot-6895352793/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 08:48:44] 2025-11-27 07:48:00,377 | INFO     | extracted standard info from prmon json
[2025-11-27 08:48:44] 2025-11-27 07:48:00,377 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 08:48:44] 2025-11-27 07:48:00,377 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 08:48:44] 2025-11-27 07:48:00,398 | INFO     | fitting pss+swap vs Time
[2025-11-27 08:48:44] 2025-11-27 07:48:00,400 | INFO     | sum of square deviations: 612927336023.5403
[2025-11-27 08:48:44] 2025-11-27 07:48:00,444 | INFO     | sum of deviations: 3315960546525.887
[2025-11-27 08:48:44] 2025-11-27 07:48:00,444 | INFO     | mean x: 1764191276.0191236
[2025-11-27 08:48:44] 2025-11-27 07:48:00,444 | INFO     | mean y: 2826485.2964143427
[2025-11-27 08:48:44] 2025-11-27 07:48:00,444 | INFO     | intersect: -9541516414.723791
[2025-11-27 08:48:44] 2025-11-27 07:48:00,446 | INFO     | chi2: 24.61284573290213
[2025-11-27 08:48:44] 2025-11-27 07:48:00,447 | INFO     | sum of square deviations: 605631040465.827
[2025-11-27 08:48:44] 2025-11-27 07:48:00,490 | INFO     | sum of deviations: 3739927537409.118
[2025-11-27 08:48:44] 2025-11-27 07:48:00,490 | INFO     | mean x: 1764191123.5232
[2025-11-27 08:48:44] 2025-11-27 07:48:00,490 | INFO     | mean y: 2835346.1512
[2025-11-27 08:48:44] 2025-11-27 07:48:00,490 | INFO     | intersect: -10891498866.04881
[2025-11-27 08:48:44] 2025-11-27 07:48:00,492 | INFO     | chi2: 21.298978698973723
[2025-11-27 08:48:44] 2025-11-27 07:48:00,492 | INFO     | current chi2=21.298978698973723 (change=13.463973527849618 %)
[2025-11-27 08:48:44] 2025-11-27 07:48:00,492 | INFO     | right removable region: 1249
[2025-11-27 08:48:44] 2025-11-27 07:48:00,493 | INFO     | sum of square deviations: 605630260275.8269
[2025-11-27 08:48:44] 2025-11-27 07:48:00,533 | INFO     | sum of deviations: 2776698062958.0547
[2025-11-27 08:48:44] 2025-11-27 07:48:00,533 | INFO     | mean x: 1764191428.5232
[2025-11-27 08:48:44] 2025-11-27 07:48:00,533 | INFO     | mean y: 2837755.5152
[2025-11-27 08:48:44] 2025-11-27 07:48:00,533 | INFO     | intersect: -8085640056.073265
[2025-11-27 08:48:44] 2025-11-27 07:48:00,535 | INFO     | chi2: 19.48480153846482
[2025-11-27 08:48:44] 2025-11-27 07:48:00,535 | INFO     | current chi2=19.48480153846482 (change=20.83482848788269 %)
[2025-11-27 08:48:44] 2025-11-27 07:48:00,535 | INFO     | left removable region: 10
[2025-11-27 08:48:44] 2025-11-27 07:48:00,536 | INFO     | sum of square deviations: 589781957410.7083
[2025-11-27 08:48:44] 2025-11-27 07:48:00,575 | INFO     | sum of deviations: 2822103010074.9893
[2025-11-27 08:48:44] 2025-11-27 07:48:00,576 | INFO     | mean x: 1764191398.032284
[2025-11-27 08:48:44] 2025-11-27 07:48:00,576 | INFO     | mean y: 2859099.2502017757
[2025-11-27 08:48:44] 2025-11-27 07:48:00,576 | INFO     | intersect: -8438785803.881786
[2025-11-27 08:48:44] 2025-11-27 07:48:00,577 | INFO     | chi2: 11.2117409516026
[2025-11-27 08:48:44] 2025-11-27 07:48:00,578 | INFO     | current memory leak: 4.78 B/s (using 1239 data points, chi2=11.21)
[2025-11-27 08:48:44] 2025-11-27 07:48:00,579 | INFO     | could have reported an average CPU frequency of 2250 MHz (43 samples)
[2025-11-27 08:48:44] 2025-11-27 07:48:00,579 | INFO     | ..............................
[2025-11-27 08:48:44] 2025-11-27 07:48:00,579 | INFO     | . Timing measurements:
[2025-11-27 08:48:44] 2025-11-27 07:48:00,579 | INFO     | . get job = 0 s
[2025-11-27 08:48:44] 2025-11-27 07:48:00,579 | INFO     | . initial setup = 8 s
[2025-11-27 08:48:44] 2025-11-27 07:48:00,579 | INFO     | . payload setup = 132 s
[2025-11-27 08:48:44] 2025-11-27 07:48:00,579 | INFO     | . stage-in = 0 s
[2025-11-27 08:48:44] 2025-11-27 07:48:00,579 | INFO     | . payload execution = 76718 s
[2025-11-27 08:48:44] 2025-11-27 07:48:00,579 | INFO     | . stage-out = 3 s
[2025-11-27 08:48:44] 2025-11-27 07:48:00,579 | INFO     | . log creation = 1 s
[2025-11-27 08:48:44] 2025-11-27 07:48:00,580 | INFO     | ..............................
[2025-11-27 08:48:44] 2025-11-27 07:48:00,927 | INFO     | 
[2025-11-27 08:48:44] 2025-11-27 07:48:00,927 | INFO     | job summary report
[2025-11-27 08:48:44] 2025-11-27 07:48:00,927 | INFO     | --------------------------------------------------
[2025-11-27 08:48:44] 2025-11-27 07:48:00,927 | INFO     | PanDA job id: 6895352793
[2025-11-27 08:48:44] 2025-11-27 07:48:00,927 | INFO     | task id: 47556137
[2025-11-27 08:48:44] 2025-11-27 07:48:00,927 | INFO     | errors: (none)
[2025-11-27 08:48:44] 2025-11-27 07:48:00,927 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 08:48:44] 2025-11-27 07:48:00,928 | INFO     | pilot state: finished 
[2025-11-27 08:48:44] 2025-11-27 07:48:00,928 | INFO     | transexitcode: 0
[2025-11-27 08:48:44] 2025-11-27 07:48:00,928 | INFO     | exeerrorcode: 0
[2025-11-27 08:48:44] 2025-11-27 07:48:00,928 | INFO     | exeerrordiag: 
[2025-11-27 08:48:44] 2025-11-27 07:48:00,928 | INFO     | exitcode: 0
[2025-11-27 08:48:44] 2025-11-27 07:48:00,928 | INFO     | exitmsg: OK
[2025-11-27 08:48:44] 2025-11-27 07:48:00,928 | INFO     | cpuconsumptiontime: 288115 s
[2025-11-27 08:48:44] 2025-11-27 07:48:00,928 | INFO     | nevents: 1000
[2025-11-27 08:48:44] 2025-11-27 07:48:00,929 | INFO     | neventsw: 0
[2025-11-27 08:48:44] 2025-11-27 07:48:00,929 | INFO     | pid: 12105
[2025-11-27 08:48:44] 2025-11-27 07:48:00,929 | INFO     | pgrp: 12105
[2025-11-27 08:48:44] 2025-11-27 07:48:00,929 | INFO     | corecount: 8
[2025-11-27 08:48:44] 2025-11-27 07:48:00,929 | INFO     | event service: False
[2025-11-27 08:48:44] 2025-11-27 07:48:00,929 | INFO     | sizes: {0: 2284094, 1: 2284293, 12: 2284293, 23: 2284321, 33: 2284349, 44: 2284405, 55: 2284561, 65: 2284589, 76: 2284617, 87: 2284673, 89: 2284963, 98: 2285271, 7
[2025-11-27 08:48:44] 2025-11-27 07:48:00,929 | INFO     | --------------------------------------------------
[2025-11-27 08:48:44] 2025-11-27 07:48:00,929 | INFO     | 
[2025-11-27 08:48:44] 2025-11-27 07:48:00,929 | INFO     | executing command: ls -lF /var/lib/boinc/slots/18
[2025-11-27 08:48:44] 2025-11-27 07:48:01,093 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 08:48:44] 2025-11-27 07:48:01,094 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 08:48:44] 2025-11-27 07:48:01,094 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 08:48:44] 2025-11-27 07:48:01,094 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 08:48:44] 2025-11-27 07:48:01,094 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 08:48:44] 2025-11-27 07:48:01,094 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 08:48:44] 2025-11-27 07:48:01,094 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 08:48:44] 2025-11-27 07:48:01,094 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 08:48:44] 2025-11-27 07:48:01,094 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 08:48:44] 2025-11-27 07:48:01,095 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 08:48:44] 2025-11-27 07:48:01,095 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 08:48:44] 2025-11-27 07:48:01,095 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 08:48:44] 2025-11-27 07:48:01,095 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 08:48:44] 2025-11-27 07:48:01,095 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 08:48:44] 2025-11-27 07:48:01,095 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 08:48:44] 2025-11-27 07:48:01,095 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 08:48:44] 2025-11-27 07:48:01,095 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 08:48:44] 2025-11-27 07:48:01,095 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 08:48:44] 2025-11-27 07:48:01,095 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 08:48:44] 2025-11-27 07:48:01,096 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 08:48:44] 2025-11-27 07:48:01,096 | INFO     | job 6895352793 has completed (purged errors)
[2025-11-27 08:48:44] 2025-11-27 07:48:01,096 | INFO     | overall cleanup function is called
[2025-11-27 08:48:44] 2025-11-27 07:48:02,113 | INFO     | --- collectZombieJob: --- 10, [12105]
[2025-11-27 08:48:44] 2025-11-27 07:48:02,113 | INFO     | zombie collector waiting for pid 12105
[2025-11-27 08:48:44] 2025-11-27 07:48:02,113 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 08:48:44] 2025-11-27 07:48:02,113 | INFO     | collected zombie processes
[2025-11-27 08:48:44] 2025-11-27 07:48:02,113 | INFO     | will attempt to kill all subprocesses of pid=12105
[2025-11-27 08:48:44] 2025-11-27 07:48:02,230 | INFO     | process IDs to be killed: [12105] (in reverse order)
[2025-11-27 08:48:44] 2025-11-27 07:48:02,733 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 08:48:44] 2025-11-27 07:48:02,733 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 08:48:44] 2025-11-27 07:48:02,736 | INFO     | did not find any defunct processes belonging to 12105
[2025-11-27 08:48:44] 2025-11-27 07:48:02,738 | INFO     | did not find any defunct processes belonging to 12105
[2025-11-27 08:48:44] 2025-11-27 07:48:02,765 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 08:48:44] 2025-11-27 07:48:02,766 | INFO     | ready for new job
[2025-11-27 08:48:44] 2025-11-27 07:48:02,766 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 08:48:44] 2025-11-27 07:48:02,770 | INFO     | ***************************************
[2025-11-27 08:48:44] 2025-11-27 07:48:02,770 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 08:48:44] 2025-11-27 07:48:02,770 | INFO     | ***************************************
[2025-11-27 08:48:44] 2025-11-27 07:48:02,770 | INFO     | 
[2025-11-27 08:48:44] 2025-11-27 07:48:02,771 | INFO     | pilot is running in a VM
[2025-11-27 08:48:44] 2025-11-27 07:48:02,771 | INFO     | architecture information:
[2025-11-27 08:48:44] 2025-11-27 07:48:02,771 | INFO     | executing command: cat /etc/os-release
[2025-11-27 08:48:44] 2025-11-27 07:48:03,013 | INFO     | cat /etc/os-release:
[2025-11-27 08:48:44] NAME="CentOS Linux"
[2025-11-27 08:48:44] VERSION="7 (Core)"
[2025-11-27 08:48:44] ID="centos"
[2025-11-27 08:48:44] ID_LIKE="rhel fedora"
[2025-11-27 08:48:44] VERSION_ID="7"
[2025-11-27 08:48:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 08:48:44] ANSI_COLOR="0;31"
[2025-11-27 08:48:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 08:48:44] HOME_URL="https://www.centos.org/"
[2025-11-27 08:48:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 08:48:44] 
[2025-11-27 08:48:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 08:48:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 08:48:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 08:48:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 08:48:44] 
[2025-11-27 08:48:44] 2025-11-27 07:48:03,013 | INFO     | ***************************************
[2025-11-27 08:48:44] 2025-11-27 07:48:03,517 | INFO     | executing command: df -mP /var/lib/boinc/slots/18
[2025-11-27 08:48:44] 2025-11-27 07:48:03,736 | INFO     | sufficient remaining disk space (495378759680 B)
[2025-11-27 08:48:44] 2025-11-27 07:48:03,737 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 08:48:44] 2025-11-27 07:48:03,737 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 08:48:44] 2025-11-27 07:48:03,737 | INFO     | update_server=False
[2025-11-27 08:48:44] 2025-11-27 07:48:03,737 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 08:48:44] 2025-11-27 07:48:03,738 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 08:48:44] 2025-11-27 07:48:03,777 | INFO     | all job control threads have been joined
[2025-11-27 08:48:44] 2025-11-27 07:48:04,199 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 08:48:44] 2025-11-27 07:48:04,199 | INFO     | aborting loop
[2025-11-27 08:48:44] 2025-11-27 07:48:04,290 | INFO     | all data control threads have been joined
[2025-11-27 08:48:44] 2025-11-27 07:48:04,743 | INFO     | [job] retrieve thread has finished
[2025-11-27 08:48:44] 2025-11-27 07:48:04,783 | INFO     | [job] control thread has finished
[2025-11-27 08:48:44] 2025-11-27 07:48:04,920 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 08:48:44] 2025-11-27 07:48:05,107 | INFO     | [payload] validate_post thread has finished
[2025-11-27 08:48:44] 2025-11-27 07:48:05,196 | INFO     | all payload control threads have been joined
[2025-11-27 08:48:44] 2025-11-27 07:48:05,205 | INFO     | [job] job monitor thread has finished
[2025-11-27 08:48:44] 2025-11-27 07:48:05,253 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 08:48:44] 2025-11-27 07:48:05,270 | INFO     | [job] validate thread has finished
[2025-11-27 08:48:44] 2025-11-27 07:48:05,296 | INFO     | [data] control thread has finished
[2025-11-27 08:48:44] 2025-11-27 07:48:05,330 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 08:48:44] 2025-11-27 07:48:05,390 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 08:48:44] 2025-11-27 07:48:05,623 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 08:48:44] 2025-11-27 07:48:05,701 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 08:48:44] 2025-11-27 07:48:05,745 | INFO     | [data] copytool_out thread has finished
[2025-11-27 08:48:44] 2025-11-27 07:48:05,802 | INFO     | [data] copytool_in thread has finished
[2025-11-27 08:48:44] 2025-11-27 07:48:06,097 | INFO     | [payload] failed_post thread has finished
[2025-11-27 08:48:44] 2025-11-27 07:48:06,202 | INFO     | [payload] control thread has finished
[2025-11-27 08:48:44] 2025-11-27 07:48:06,707 | INFO     | [job] queue monitor thread has finished
[2025-11-27 08:48:44] 2025-11-27 07:48:09,339 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 08:48:44] 2025-11-27 07:48:33,262 | INFO     | PID=5532 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-27 08:48:44] 2025-11-27 07:48:33,262 | INFO     | .. there are 9 such processes running
[2025-11-27 08:48:44] 2025-11-27 07:48:33,263 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 08:48:44] 2025-11-27 07:48:33,263 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 08:48:44] 2025-11-27 07:48:33,263 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 08:48:44] 2025-11-27 07:48:34,300 | INFO     | [monitor] cgroup control has ended
[2025-11-27 08:48:44] 2025-11-27 07:48:35,287 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140433294128960)>', '<ExcThread(monitor, started 140432864433920)>']
[2025-11-27 08:48:44] 2025-11-27 07:48:36,281 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 08:48:44] 2025-11-27 07:48:36,281 | INFO     | [monitor] control thread has ended
[2025-11-27 08:48:44] 2025-11-27 07:48:40,313 | INFO     | all workflow threads have been joined
[2025-11-27 08:48:44] 2025-11-27 07:48:40,313 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 08:48:44] 2025-11-27 07:48:40,313 | INFO     | traces error code: 0
[2025-11-27 08:48:44] 2025-11-27 07:48:40,313 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 08:48:44] 2025-11-27 07:48:40,516 [wrapper] ==== pilot stdout END ====
[2025-11-27 08:48:44] 2025-11-27 07:48:40,526 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 08:48:44] 2025-11-27 07:48:40,535 [wrapper] pilotpid: 5532
[2025-11-27 08:48:44] 2025-11-27 07:48:40,543 [wrapper] Pilot exit status: 0
[2025-11-27 08:48:44] 2025-11-27 07:48:40,938 [wrapper] pandaids: 6895352793
[2025-11-27 08:48:44] 2025-11-27 07:48:41,685 [wrapper] cleanup supervisor_pilot  5632 5533
[2025-11-27 08:48:44] 2025-11-27 07:48:41,746 [wrapper] Test setup, not cleaning
[2025-11-27 08:48:44] 2025-11-27 07:48:41,820 [wrapper] apfmon messages muted
[2025-11-27 08:48:44] 2025-11-27 07:48:41,836 [wrapper] ==== wrapper stdout END ====
[2025-11-27 08:48:44] 2025-11-27 07:48:41,850 [wrapper] ==== wrapper stderr END ====
[2025-11-27 08:48:44]  *** Error codes and diagnostics ***
[2025-11-27 08:48:44]     "exeErrorCode": 0,
[2025-11-27 08:48:44]     "exeErrorDiag": "",
[2025-11-27 08:48:44]     "pilotErrorCode": 0,
[2025-11-27 08:48:44]     "pilotErrorDiag": "",
[2025-11-27 08:48:44]  *** Listing of results directory ***
[2025-11-27 08:48:44] total 1316628
[2025-11-27 08:48:44] -rw-r--r--. 1 boinc boinc      5112 Nov 23 04:47 queuedata.json
[2025-11-27 08:48:44] -rw-r--r--. 1 boinc boinc    576529 Nov 23 04:47 pilot3.tar.gz
[2025-11-27 08:48:44] -rwx------. 1 boinc boinc     36292 Nov 23 04:48 runpilot2-wrapper.sh
[2025-11-27 08:48:44] -rw-r--r--. 1 boinc boinc       100 Nov 26 11:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 08:48:44] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 11:18 run_atlas
[2025-11-27 08:48:44] -rw-r--r--. 1 boinc boinc       105 Nov 26 11:18 job.xml
[2025-11-27 08:48:44] -rw-r--r--. 2 boinc boinc 408589072 Nov 26 11:18 EVNT.47483658._000602.pool.root.1
[2025-11-27 08:48:44] drwxrwx--x. 2 boinc boinc        68 Nov 26 11:18 shared
[2025-11-27 08:48:44] -rw-r--r--. 2 boinc boinc    590100 Nov 26 11:18 input.tar.gz
[2025-11-27 08:48:44] -rw-r--r--. 1 boinc boinc      6393 Nov 26 11:18 init_data.xml
[2025-11-27 08:48:44] -rw-r--r--. 2 boinc boinc     15847 Nov 26 11:18 start_atlas.sh
[2025-11-27 08:48:44] -rw-r--r--. 1 boinc boinc         0 Nov 26 11:18 boinc_lockfile
[2025-11-27 08:48:44] -rw-r--r--. 1 boinc boinc      2785 Nov 26 11:18 pandaJob.out
[2025-11-27 08:48:44] -rw-------. 1 boinc boinc    991827 Nov 26 11:22 agis_schedconf.cvmfs.json
[2025-11-27 08:48:44] drwx------. 5 boinc boinc      4096 Nov 26 11:22 pilot3
[2025-11-27 08:48:44] -rw-r--r--. 1 boinc boinc       533 Nov 27 08:26 boinc_task_state.xml
[2025-11-27 08:48:44] -rw-------. 1 boinc boinc 910376957 Nov 27 08:45 HITS.47556137._005979.pool.root.1
[2025-11-27 08:48:44] -rw-------. 1 boinc boinc      1027 Nov 27 08:46 memory_monitor_summary.json
[2025-11-27 08:48:44] -rw-------. 1 boinc boinc   1516240 Nov 27 08:46 agis_ddmendpoints.agis.ALL.json
[2025-11-27 08:48:44] -rw-------. 1 boinc boinc   2367177 Nov 27 08:46 log.47556137._005979.job.log.tgz.1
[2025-11-27 08:48:44] -rw-------. 1 boinc boinc      7957 Nov 27 08:48 heartbeat.json
[2025-11-27 08:48:44] -rw-------. 1 boinc boinc        95 Nov 27 08:48 pilot_heartbeat.json
[2025-11-27 08:48:44] -rw-------. 1 boinc boinc      4884 Nov 27 08:48 pilotlog.txt
[2025-11-27 08:48:44] -rw-------. 1 boinc boinc  10316208 Nov 27 08:48 log.47556137._005979.job.log.1
[2025-11-27 08:48:44] -rw-r--r--. 1 boinc boinc      8192 Nov 27 08:48 boinc_mmap_file
[2025-11-27 08:48:44] -rw-------. 1 boinc boinc       353 Nov 27 08:48 output.list
[2025-11-27 08:48:44] -rw-r--r--. 1 boinc boinc       620 Nov 27 08:48 runtime_log
[2025-11-27 08:48:44] -rw-------. 1 boinc boinc  12697600 Nov 27 08:48 result.tar.gz
[2025-11-27 08:48:44] -rw-r--r--. 1 boinc boinc        29 Nov 27 08:48 wrapper_checkpoint.txt
[2025-11-27 08:48:44] -rw-r--r--. 1 boinc boinc      8833 Nov 27 08:48 runtime_log.err
[2025-11-27 08:48:44] -rw-------. 1 boinc boinc       662 Nov 27 08:48 8YTLDmZGGh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm9aKKDm9cx9rn.diag
[2025-11-27 08:48:44] -rw-r--r--. 1 boinc boinc     21481 Nov 27 08:48 stderr.txt
[2025-11-27 08:48:44] HITS file was successfully produced:
[2025-11-27 08:48:44] -rw-------. 1 boinc boinc 910376957 Nov 27 08:45 shared/HITS.pool.root.1
[2025-11-27 08:48:44]  *** Contents of shared directory: ***
[2025-11-27 08:48:44] total 1301052
[2025-11-27 08:48:44] -rw-r--r--. 2 boinc boinc 408589072 Nov 26 11:18 ATLAS.root_0
[2025-11-27 08:48:44] -rw-r--r--. 2 boinc boinc    590100 Nov 26 11:18 input.tar.gz
[2025-11-27 08:48:44] -rw-r--r--. 2 boinc boinc     15847 Nov 26 11:18 start_atlas.sh
[2025-11-27 08:48:44] -rw-------. 1 boinc boinc 910376957 Nov 27 08:45 HITS.pool.root.1
[2025-11-27 08:48:44] -rw-------. 1 boinc boinc  12697600 Nov 27 08:48 result.tar.gz
08:48:46 (1719): run_atlas exited; CPU time 288587.517085
08:48:46 (1719): called boinc_finish(0)

</stderr_txt>
]]>

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