Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:33:10 (4118142): wrapper (7.7.26015): starting
23:33:10 (4118142): wrapper: running run_atlas (--nthreads 3)
[2025-11-23 23:33:10] Arguments: --nthreads 3
[2025-11-23 23:33:10] Threads: 3
[2025-11-23 23:33:10] Checking for CVMFS
[2025-11-23 23:33:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 23:33:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 23:33:10] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 23:33:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 23:33:10] 2.9.2.0 4055337 13 50824 153223 2 88 34912732 36864001 0 130560 0 187842 99.992 1451 8151 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-23 23:33:10] CVMFS is ok
[2025-11-23 23:33:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 23:33:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 23:33:10] Further information can be found at the LHC@home message board.
[2025-11-23 23:33:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 23:33:10] Checking for apptainer binary...
[2025-11-23 23:33:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 23:33:10] Running /usr/bin/apptainer --version
[2025-11-23 23:33:10] apptainer version 1.4.1-1.1
[2025-11-23 23:33:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 23:33:10] thA335
[2025-11-23 23:33:10] apptainer works
[2025-11-23 23:33:10] Set ATHENA_PROC_NUMBER=3
[2025-11-23 23:33:10] Set ATHENA_CORE_NUMBER=3
[2025-11-23 23:33:10] Starting ATLAS job with PandaID=6894267592
[2025-11-23 23:33:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 23:37:29]  *** The last 200 lines of the pilot log: ***
[2025-11-23 23:37:29] 2025-11-23 22:36:33,029 | INFO     | 
[2025-11-23 23:37:29] 2025-11-23 22:36:33,029 | INFO     | architecture information:
[2025-11-23 23:37:29] 2025-11-23 22:36:33,030 | INFO     | executing command: cat /etc/os-release
[2025-11-23 23:37:29] 2025-11-23 22:36:33,038 | INFO     | cat /etc/os-release:
[2025-11-23 23:37:29] NAME="CentOS Linux"
[2025-11-23 23:37:29] VERSION="7 (Core)"
[2025-11-23 23:37:29] ID="centos"
[2025-11-23 23:37:29] ID_LIKE="rhel fedora"
[2025-11-23 23:37:29] VERSION_ID="7"
[2025-11-23 23:37:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 23:37:29] ANSI_COLOR="0;31"
[2025-11-23 23:37:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 23:37:29] HOME_URL="https://www.centos.org/"
[2025-11-23 23:37:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 23:37:29] 
[2025-11-23 23:37:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 23:37:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 23:37:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 23:37:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 23:37:29] 
[2025-11-23 23:37:29] 2025-11-23 22:36:33,038 | INFO     | ***************************************
[2025-11-23 23:37:29] 2025-11-23 22:36:33,542 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-23 23:37:29] 2025-11-23 22:36:33,555 | INFO     | sufficient remaining disk space (827130380288 B)
[2025-11-23 23:37:29] 2025-11-23 22:36:33,555 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 23:37:29] 2025-11-23 22:36:33,555 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 23:37:29] 2025-11-23 22:36:33,555 | INFO     | update_server=False
[2025-11-23 23:37:29] 2025-11-23 22:36:33,555 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 23:37:29] 2025-11-23 22:36:33,555 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 23:37:29] 2025-11-23 22:36:33,555 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 23:37:29] 2025-11-23 22:36:33,802 | INFO     | all data control threads have been joined
[2025-11-23 23:37:29] 2025-11-23 22:36:33,997 | INFO     | all job control threads have been joined
[2025-11-23 23:37:29] 2025-11-23 22:36:34,005 | INFO     | all payload control threads have been joined
[2025-11-23 23:37:29] 2025-11-23 22:36:34,104 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 23:37:29] 2025-11-23 22:36:34,104 | INFO     | aborting loop
[2025-11-23 23:37:29] 2025-11-23 22:36:34,561 | INFO     | [job] retrieve thread has finished
[2025-11-23 23:37:29] 2025-11-23 22:36:34,562 | INFO     | [job] queue monitor thread has finished
[2025-11-23 23:37:29] 2025-11-23 22:36:34,808 | INFO     | [data] control thread has finished
[2025-11-23 23:37:29] 2025-11-23 22:36:34,914 | INFO     | [payload] failed_post thread has finished
[2025-11-23 23:37:29] 2025-11-23 22:36:35,003 | INFO     | [job] control thread has finished
[2025-11-23 23:37:29] 2025-11-23 22:36:35,011 | INFO     | [payload] control thread has finished
[2025-11-23 23:37:29] 2025-11-23 22:36:35,038 | INFO     | [job] validate thread has finished
[2025-11-23 23:37:29] 2025-11-23 22:36:35,110 | INFO     | [job] job monitor thread has finished
[2025-11-23 23:37:29] 2025-11-23 22:36:35,115 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 23:37:29] 2025-11-23 22:36:35,173 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 23:37:29] 2025-11-23 22:36:35,562 | INFO     | [data] copytool_out thread has finished
[2025-11-23 23:37:29] 2025-11-23 22:36:35,580 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 23:37:29] 2025-11-23 22:36:35,742 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 23:37:29] 2025-11-23 22:36:35,812 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 23:37:29] 2025-11-23 22:36:35,954 | INFO     | [data] copytool_in thread has finished
[2025-11-23 23:37:29] 2025-11-23 22:36:35,987 | INFO     | [payload] validate_post thread has finished
[2025-11-23 23:37:29] 2025-11-23 22:36:39,750 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 23:37:29] 2025-11-23 22:37:03,625 | INFO     | PID=4121869 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 23:37:29] 2025-11-23 22:37:03,625 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 23:37:29] 2025-11-23 22:37:03,625 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 23:37:29] 2025-11-23 22:37:03,625 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 23:37:29] 2025-11-23 22:37:22,813 | INFO     | [monitor] cgroup control has ended
[2025-11-23 23:37:29] 2025-11-23 22:37:23,613 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140076743599936)>', '<ExcThread(monitor, started 140076105320192)>']
[2025-11-23 23:37:29] 2025-11-23 22:37:23,731 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 23:37:29] 2025-11-23 22:37:23,732 | INFO     | [monitor] control thread has ended
[2025-11-23 23:37:29] 2025-11-23 22:37:28,639 | INFO     | all workflow threads have been joined
[2025-11-23 23:37:29] 2025-11-23 22:37:28,640 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 23:37:29] 2025-11-23 22:37:28,640 | INFO     | traces error code: 0
[2025-11-23 23:37:29] 2025-11-23 22:37:28,641 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 23:37:29] 2025-11-23 22:37:28,688 [wrapper] ==== pilot stdout END ====
[2025-11-23 23:37:29] 2025-11-23 22:37:28,691 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 23:37:29] 2025-11-23 22:37:28,694 [wrapper] pilotpid: 4121869
[2025-11-23 23:37:29] 2025-11-23 22:37:28,697 [wrapper] Pilot exit status: 0
[2025-11-23 23:37:29] 2025-11-23 22:37:28,704 [wrapper] pandaids: 6894267592
[2025-11-23 23:37:29] 2025-11-23 22:37:28,722 [wrapper] cleanup supervisor_pilot 4121875 4121870
[2025-11-23 23:37:29] 2025-11-23 22:37:28,725 [wrapper] Test setup, not cleaning
[2025-11-23 23:37:29] 2025-11-23 22:37:28,728 [wrapper] apfmon messages muted
[2025-11-23 23:37:29] 2025-11-23 22:37:28,730 [wrapper] ==== wrapper stdout END ====
[2025-11-23 23:37:29] 2025-11-23 22:37:28,733 [wrapper] ==== wrapper stderr END ====
[2025-11-23 23:37:29]  *** Error codes and diagnostics ***
[2025-11-23 23:37:29]     "exeErrorCode": 65,
[2025-11-23 23:37:29]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-23 23:37:29]     "pilotErrorCode": 1305,
[2025-11-23 23:37:29]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-23 23:37:29]  *** Listing of results directory ***
[2025-11-23 23:37:29] total 402568
[2025-11-23 23:37:29] -rw-r--r-- 1 boinc boinc    576529 Nov 21 06:09 pilot3.tar.gz
[2025-11-23 23:37:29] -rwx------ 1 boinc boinc     36292 Nov 21 06:19 runpilot2-wrapper.sh
[2025-11-23 23:37:29] -rw-r--r-- 1 boinc boinc      5112 Nov 21 06:19 queuedata.json
[2025-11-23 23:37:29] -rw-r--r-- 1 boinc boinc       100 Nov 23 23:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 23:37:29] -rwxr-xr-x 1 boinc boinc      7986 Nov 23 23:33 run_atlas
[2025-11-23 23:37:29] -rw-r--r-- 1 boinc boinc       105 Nov 23 23:33 job.xml
[2025-11-23 23:37:29] -rw-r--r-- 2 boinc boinc 408037452 Nov 23 23:33 EVNT.47493127._002240.pool.root.1
[2025-11-23 23:37:29] -rw-r--r-- 2 boinc boinc    590097 Nov 23 23:33 input.tar.gz
[2025-11-23 23:37:29] -rw-r--r-- 2 boinc boinc     15847 Nov 23 23:33 start_atlas.sh
[2025-11-23 23:37:29] drwxrwx--x 2 boinc boinc      4096 Nov 23 23:33 shared
[2025-11-23 23:37:29] -rw-r--r-- 1 boinc boinc         0 Nov 23 23:33 boinc_setup_complete
[2025-11-23 23:37:29] -rw-r--r-- 1 boinc boinc      6195 Nov 23 23:33 init_data.xml
[2025-11-23 23:37:29] -rw-r--r-- 1 boinc boinc         0 Nov 23 23:33 boinc_lockfile
[2025-11-23 23:37:29] -rw-r--r-- 1 boinc boinc      2786 Nov 23 23:33 pandaJob.out
[2025-11-23 23:37:29] -rw------- 1 boinc boinc    989786 Nov 23 23:33 agis_schedconf.cvmfs.json
[2025-11-23 23:37:29] -rw------- 1 boinc boinc   1526164 Nov 23 23:33 agis_ddmendpoints.agis.ALL.json
[2025-11-23 23:37:29] drwx------ 5 boinc boinc      4096 Nov 23 23:33 pilot3
[2025-11-23 23:37:29] -rw-r--r-- 1 boinc boinc       522 Nov 23 23:34 boinc_task_state.xml
[2025-11-23 23:37:29] -rw------- 1 boinc boinc       985 Nov 23 23:34 memory_monitor_summary.json
[2025-11-23 23:37:29] -rw------- 1 boinc boinc     55715 Nov 23 23:34 log.47533967._002112.job.log.tgz.1
[2025-11-23 23:37:29] -rw------- 1 boinc boinc        95 Nov 23 23:36 pilot_heartbeat.json
[2025-11-23 23:37:29] -rw------- 1 boinc boinc      8387 Nov 23 23:36 heartbeat.json
[2025-11-23 23:37:29] -rw-r--r-- 1 boinc boinc        22 Nov 23 23:37 wrapper_checkpoint.txt
[2025-11-23 23:37:29] -rw-r--r-- 1 boinc boinc      8192 Nov 23 23:37 boinc_mmap_file
[2025-11-23 23:37:29] -rw------- 1 boinc boinc      4752 Nov 23 23:37 pilotlog.txt
[2025-11-23 23:37:29] -rw------- 1 boinc boinc     91610 Nov 23 23:37 log.47533967._002112.job.log.1
[2025-11-23 23:37:29] -rw------- 1 boinc boinc       186 Nov 23 23:37 output.list
[2025-11-23 23:37:29] -rw-r--r-- 1 boinc boinc       620 Nov 23 23:37 runtime_log
[2025-11-23 23:37:29] -rw------- 1 boinc boinc    163840 Nov 23 23:37 result.tar.gz
[2025-11-23 23:37:29] -rw-r--r-- 1 boinc boinc      8744 Nov 23 23:37 runtime_log.err
[2025-11-23 23:37:29] -rw------- 1 boinc boinc       649 Nov 23 23:37 E3bKDmhjYg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm75IKDmwlWhOn.diag
[2025-11-23 23:37:29] -rw-r--r-- 1 boinc boinc      9401 Nov 23 23:37 stderr.txt
[2025-11-23 23:37:29] No HITS result produced
[2025-11-23 23:37:29]  *** Contents of shared directory: ***
[2025-11-23 23:37:29] total 399236
[2025-11-23 23:37:29] -rw-r--r-- 2 boinc boinc 408037452 Nov 23 23:33 ATLAS.root_0
[2025-11-23 23:37:29] -rw-r--r-- 2 boinc boinc    590097 Nov 23 23:33 input.tar.gz
[2025-11-23 23:37:29] -rw-r--r-- 2 boinc boinc     15847 Nov 23 23:33 start_atlas.sh
[2025-11-23 23:37:29] -rw------- 1 boinc boinc    163840 Nov 23 23:37 result.tar.gz
23:37:30 (4118142): run_atlas exited; CPU time 30.602958
23:37:30 (4118142): called boinc_finish(0)

</stderr_txt>
]]>

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