Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:55:08 (28411): wrapper (7.7.26015): starting
23:55:08 (28411): wrapper: running run_atlas (--nthreads 3)
[2025-11-23 23:55:08] Arguments: --nthreads 3
[2025-11-23 23:55:08] Threads: 3
[2025-11-23 23:55:08] Checking for CVMFS
[2025-11-23 23:55:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 23:55:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 23:55:09] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 23:55:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 23:55:09] 2.9.2.0 4055337 35 53436 153223 0 88 34912878 36864001 0 130560 0 500839 99.997 1454 7734 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-23 23:55:09] CVMFS is ok
[2025-11-23 23:55:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 23:55:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 23:55:09] Further information can be found at the LHC@home message board.
[2025-11-23 23:55:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 23:55:09] Checking for apptainer binary...
[2025-11-23 23:55:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 23:55:09] Running /usr/bin/apptainer --version
[2025-11-23 23:55:09] apptainer version 1.4.1-1.1
[2025-11-23 23:55:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 23:55:09] thA335
[2025-11-23 23:55:09] apptainer works
[2025-11-23 23:55:09] Set ATHENA_PROC_NUMBER=3
[2025-11-23 23:55:09] Set ATHENA_CORE_NUMBER=3
[2025-11-23 23:55:09] Starting ATLAS job with PandaID=6895352279
[2025-11-23 23:55:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 23:59:28]  *** The last 200 lines of the pilot log: ***
[2025-11-23 23:59:28] 2025-11-23 22:58:37,148 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 23:59:28] 2025-11-23 22:58:37,148 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 23:59:28] 2025-11-23 22:58:37,148 | INFO     | update_server=False
[2025-11-23 23:59:28] 2025-11-23 22:58:37,148 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 23:59:28] 2025-11-23 22:58:37,148 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 23:59:28] 2025-11-23 22:58:37,473 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 23:59:28] 2025-11-23 22:58:37,606 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-23 23:59:28] 2025-11-23 22:58:37,607 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-23 23:59:28] 2025-11-23 22:58:37,607 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 23:59:28] 2025-11-23 22:58:37,608 | INFO     | will abort loop
[2025-11-23 23:59:28] 2025-11-23 22:58:37,865 | INFO     | all data control threads have been joined
[2025-11-23 23:59:28] 2025-11-23 22:58:38,154 | INFO     | [job] retrieve thread has finished
[2025-11-23 23:59:28] 2025-11-23 22:58:38,155 | INFO     | [job] queue monitor thread has finished
[2025-11-23 23:59:28] 2025-11-23 22:58:38,183 | INFO     | all payload control threads have been joined
[2025-11-23 23:59:28] 2025-11-23 22:58:38,614 | INFO     | [job] job monitor thread has finished
[2025-11-23 23:59:28] 2025-11-23 22:58:38,632 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 23:59:28] 2025-11-23 22:58:38,727 | INFO     | [data] copytool_in thread has finished
[2025-11-23 23:59:28] 2025-11-23 22:58:38,749 | INFO     | all job control threads have been joined
[2025-11-23 23:59:28] 2025-11-23 22:58:38,792 | INFO     | [payload] validate_post thread has finished
[2025-11-23 23:59:28] 2025-11-23 22:58:38,871 | INFO     | [data] control thread has finished
[2025-11-23 23:59:28] 2025-11-23 22:58:38,993 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 23:59:28] 2025-11-23 22:58:39,151 | INFO     | [job] validate thread has finished
[2025-11-23 23:59:28] 2025-11-23 22:58:39,189 | INFO     | [payload] control thread has finished
[2025-11-23 23:59:28] 2025-11-23 22:58:39,230 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 23:59:28] 2025-11-23 22:58:39,290 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 23:59:28] 2025-11-23 22:58:39,364 | INFO     | [payload] failed_post thread has finished
[2025-11-23 23:59:28] 2025-11-23 22:58:39,480 | INFO     | [data] copytool_out thread has finished
[2025-11-23 23:59:28] 2025-11-23 22:58:39,755 | INFO     | [job] control thread has finished
[2025-11-23 23:59:28] 2025-11-23 22:58:39,842 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 23:59:28] 2025-11-23 22:58:43,850 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 23:59:28] 2025-11-23 22:59:07,295 | INFO     | PID=32152 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-23 23:59:28] 2025-11-23 22:59:07,295 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 23:59:28] 2025-11-23 22:59:07,295 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 23:59:28] 2025-11-23 22:59:07,295 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 23:59:28] 2025-11-23 22:59:22,375 | INFO     | [monitor] cgroup control has ended
[2025-11-23 23:59:28] 2025-11-23 22:59:23,726 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140646273390400)>', '<ExcThread(monitor, started 140645473707776)>']
[2025-11-23 23:59:28] 2025-11-23 22:59:24,385 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 23:59:28] 2025-11-23 22:59:24,386 | INFO     | [monitor] control thread has ended
[2025-11-23 23:59:28] 2025-11-23 22:59:28,752 | INFO     | all workflow threads have been joined
[2025-11-23 23:59:28] 2025-11-23 22:59:28,752 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 23:59:28] 2025-11-23 22:59:28,753 | INFO     | traces error code: 0
[2025-11-23 23:59:28] 2025-11-23 22:59:28,753 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 23:59:28] 2025-11-23 22:59:28,798 [wrapper] ==== pilot stdout END ====
[2025-11-23 23:59:28] 2025-11-23 22:59:28,801 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 23:59:28] 2025-11-23 22:59:28,804 [wrapper] pilotpid: 32152
[2025-11-23 23:59:28] 2025-11-23 22:59:28,807 [wrapper] Pilot exit status: 0
[2025-11-23 23:59:28] 2025-11-23 22:59:28,814 [wrapper] pandaids: 6895352279
[2025-11-23 23:59:28] 2025-11-23 22:59:28,832 [wrapper] cleanup supervisor_pilot   32158 32153
[2025-11-23 23:59:28] 2025-11-23 22:59:28,834 [wrapper] Test setup, not cleaning
[2025-11-23 23:59:28] 2025-11-23 22:59:28,837 [wrapper] apfmon messages muted
[2025-11-23 23:59:28] 2025-11-23 22:59:28,840 [wrapper] ==== wrapper stdout END ====
[2025-11-23 23:59:28] 2025-11-23 22:59:28,842 [wrapper] ==== wrapper stderr END ====
[2025-11-23 23:59:28]  *** Error codes and diagnostics ***
[2025-11-23 23:59:28]     "exeErrorCode": 65,
[2025-11-23 23:59:28]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-23 23:59:28]     "pilotErrorCode": 1305,
[2025-11-23 23:59:28]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-23 23:59:28]  *** Listing of results directory ***
[2025-11-23 23:59:28] total 402748
[2025-11-23 23:59:28] -rw-r--r-- 1 boinc boinc    576529 Nov 23 03:20 pilot3.tar.gz
[2025-11-23 23:59:28] -rwx------ 1 boinc boinc     36292 Nov 23 03:44 runpilot2-wrapper.sh
[2025-11-23 23:59:28] -rw-r--r-- 1 boinc boinc      5112 Nov 23 03:44 queuedata.json
[2025-11-23 23:59:28] -rw-r--r-- 1 boinc boinc       100 Nov 23 23:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 23:59:28] -rwxr-xr-x 1 boinc boinc      7986 Nov 23 23:55 run_atlas
[2025-11-23 23:59:28] -rw-r--r-- 1 boinc boinc       105 Nov 23 23:55 job.xml
[2025-11-23 23:59:28] -rw-r--r-- 2 boinc boinc 408204615 Nov 23 23:55 EVNT.47483658._000585.pool.root.1
[2025-11-23 23:59:28] -rw-r--r-- 2 boinc boinc    590104 Nov 23 23:55 input.tar.gz
[2025-11-23 23:59:28] -rw-r--r-- 2 boinc boinc     15847 Nov 23 23:55 start_atlas.sh
[2025-11-23 23:59:28] drwxrwx--x 2 boinc boinc      4096 Nov 23 23:55 shared
[2025-11-23 23:59:28] -rw-r--r-- 1 boinc boinc         0 Nov 23 23:55 boinc_setup_complete
[2025-11-23 23:59:28] -rw-r--r-- 1 boinc boinc      6195 Nov 23 23:55 init_data.xml
[2025-11-23 23:59:28] -rw-r--r-- 1 boinc boinc         0 Nov 23 23:55 boinc_lockfile
[2025-11-23 23:59:28] -rw-r--r-- 1 boinc boinc      2786 Nov 23 23:55 pandaJob.out
[2025-11-23 23:59:28] -rw------- 1 boinc boinc    989786 Nov 23 23:55 agis_schedconf.cvmfs.json
[2025-11-23 23:59:28] -rw------- 1 boinc boinc   1526164 Nov 23 23:55 agis_ddmendpoints.agis.ALL.json
[2025-11-23 23:59:28] drwx------ 5 boinc boinc      4096 Nov 23 23:55 pilot3
[2025-11-23 23:59:28] -rw------- 1 boinc boinc       954 Nov 23 23:56 memory_monitor_summary.json
[2025-11-23 23:59:28] -rw------- 1 boinc boinc     55843 Nov 23 23:56 log.47556137._005808.job.log.tgz.1
[2025-11-23 23:59:28] -rw-r--r-- 1 boinc boinc       523 Nov 23 23:56 boinc_task_state.xml
[2025-11-23 23:59:28] -rw------- 1 boinc boinc        95 Nov 23 23:58 pilot_heartbeat.json
[2025-11-23 23:59:28] -rw------- 1 boinc boinc      8401 Nov 23 23:58 heartbeat.json
[2025-11-23 23:59:28] -rw-r--r-- 1 boinc boinc      8192 Nov 23 23:59 boinc_mmap_file
[2025-11-23 23:59:28] -rw-r--r-- 1 boinc boinc        23 Nov 23 23:59 wrapper_checkpoint.txt
[2025-11-23 23:59:28] -rw------- 1 boinc boinc      4936 Nov 23 23:59 pilotlog.txt
[2025-11-23 23:59:28] -rw------- 1 boinc boinc     93537 Nov 23 23:59 log.47556137._005808.job.log.1
[2025-11-23 23:59:28] -rw------- 1 boinc boinc       186 Nov 23 23:59 output.list
[2025-11-23 23:59:28] -rw-r--r-- 1 boinc boinc       620 Nov 23 23:59 runtime_log
[2025-11-23 23:59:28] -rw------- 1 boinc boinc    174080 Nov 23 23:59 result.tar.gz
[2025-11-23 23:59:28] -rw-r--r-- 1 boinc boinc      8744 Nov 23 23:59 runtime_log.err
[2025-11-23 23:59:28] -rw------- 1 boinc boinc       649 Nov 23 23:59 nW7NDmjGFh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmhYKKDmOuZuJo.diag
[2025-11-23 23:59:28] -rw-r--r-- 1 boinc boinc      8237 Nov 23 23:59 stderr.txt
[2025-11-23 23:59:29] No HITS result produced
[2025-11-23 23:59:29]  *** Contents of shared directory: ***
[2025-11-23 23:59:29] total 399412
[2025-11-23 23:59:29] -rw-r--r-- 2 boinc boinc 408204615 Nov 23 23:55 ATLAS.root_0
[2025-11-23 23:59:29] -rw-r--r-- 2 boinc boinc    590104 Nov 23 23:55 input.tar.gz
[2025-11-23 23:59:29] -rw-r--r-- 2 boinc boinc     15847 Nov 23 23:55 start_atlas.sh
[2025-11-23 23:59:29] -rw------- 1 boinc boinc    174080 Nov 23 23:59 result.tar.gz
23:59:30 (28411): run_atlas exited; CPU time 32.175985
23:59:30 (28411): called boinc_finish(0)

</stderr_txt>
]]>

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