Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
17:20:43 (18330): wrapper (7.7.26015): starting
17:20:43 (18330): wrapper: running run_atlas (--nthreads 12)
[2025-11-23 17:20:43] Arguments: --nthreads 12
[2025-11-23 17:20:43] Threads: 12
[2025-11-23 17:20:43] Checking for CVMFS
[2025-11-23 17:20:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 17:20:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 17:20:44] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 17:20:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 17:20:44] 2.11.2.0 14820 139298 93236 153223 2 1 12947433 20275201 1 130560 0 67934160 99.961 5609098 35833 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 17:20:44] CVMFS is ok
[2025-11-23 17:20:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 17:20:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 17:20:44] Further information can be found at the LHC@home message board.
[2025-11-23 17:20:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 17:20:44] Checking for apptainer binary...
[2025-11-23 17:20:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 17:20:44] Running /usr/bin/apptainer --version
[2025-11-23 17:20:44] apptainer version 1.3.2-1.el7
[2025-11-23 17:20:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 17:20:45] c-205-27.aglt2.org
[2025-11-23 17:20:45] apptainer works
[2025-11-23 17:20:45] Set ATHENA_PROC_NUMBER=12
[2025-11-23 17:20:45] Set ATHENA_CORE_NUMBER=12
[2025-11-23 17:20:45] Starting ATLAS job with PandaID=6895352297
[2025-11-23 17:20:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 00:35:13]  *** The last 200 lines of the pilot log: ***
[2025-11-24 00:35:13] 2025-11-24 05:34:40,426 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 00:35:13] 2025-11-24 05:34:40,624 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-24 00:35:13] 2025-11-24 05:34:40,628 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-11-24 00:35:13] 2025-11-24 05:34:40,630 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895352297/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 00:35:13] 2025-11-24 05:34:40,630 | INFO     | extracted standard info from prmon json
[2025-11-24 00:35:13] 2025-11-24 05:34:40,630 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 00:35:13] 2025-11-24 05:34:40,630 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 00:35:13] 2025-11-24 05:34:40,637 | INFO     | fitting pss+swap vs Time
[2025-11-24 00:35:13] 2025-11-24 05:34:40,637 | INFO     | sum of square deviations: 23971862315.64549
[2025-11-24 00:35:13] 2025-11-24 05:34:40,641 | INFO     | sum of deviations: 384446467259.7461
[2025-11-24 00:35:13] 2025-11-24 05:34:40,642 | INFO     | mean x: 1763949453.6596243
[2025-11-24 00:35:13] 2025-11-24 05:34:40,642 | INFO     | mean y: 3446926.915492958
[2025-11-24 00:35:13] 2025-11-24 05:34:40,642 | INFO     | intersect: -28285725059.5932
[2025-11-24 00:35:13] 2025-11-24 05:34:40,642 | INFO     | chi2: 5.184846240776987
[2025-11-24 00:35:13] 2025-11-24 05:34:40,643 | INFO     | sum of square deviations: 23137662763.01669
[2025-11-24 00:35:13] 2025-11-24 05:34:40,646 | INFO     | sum of deviations: 529818616234.606
[2025-11-24 00:35:13] 2025-11-24 05:34:40,647 | INFO     | mean x: 1763949301.1615202
[2025-11-24 00:35:13] 2025-11-24 05:34:40,647 | INFO     | mean y: 3473461.7410926367
[2025-11-24 00:35:13] 2025-11-24 05:34:40,647 | INFO     | intersect: -40388384066.03054
[2025-11-24 00:35:13] 2025-11-24 05:34:40,647 | INFO     | chi2: 2.687339661621521
[2025-11-24 00:35:13] 2025-11-24 05:34:40,648 | INFO     | current chi2=2.687339661621521 (change=48.16934703894318 %)
[2025-11-24 00:35:13] 2025-11-24 05:34:40,648 | INFO     | sum of square deviations: 22323019535.209095
[2025-11-24 00:35:13] 2025-11-24 05:34:40,652 | INFO     | sum of deviations: 561402275236.2283
[2025-11-24 00:35:13] 2025-11-24 05:34:40,652 | INFO     | mean x: 1763949148.6610577
[2025-11-24 00:35:13] 2025-11-24 05:34:40,652 | INFO     | mean y: 3479330.5264423075
[2025-11-24 00:35:13] 2025-11-24 05:34:40,652 | INFO     | intersect: -44358129720.497925
[2025-11-24 00:35:13] 2025-11-24 05:34:40,653 | INFO     | chi2: 2.3706611616474946
[2025-11-24 00:35:13] 2025-11-24 05:34:40,653 | INFO     | current chi2=2.3706611616474946 (change=11.784089093633394 %)
[2025-11-24 00:35:13] 2025-11-24 05:34:40,653 | INFO     | right removable region: 415
[2025-11-24 00:35:13] 2025-11-24 05:34:40,653 | INFO     | sum of square deviations: 23137621283.016685
[2025-11-24 00:35:13] 2025-11-24 05:34:40,657 | INFO     | sum of deviations: 250669992405.3943
[2025-11-24 00:35:13] 2025-11-24 05:34:40,657 | INFO     | mean x: 1763949606.1615202
[2025-11-24 00:35:13] 2025-11-24 05:34:40,657 | INFO     | mean y: 3471296.2589073633
[2025-11-24 00:35:13] 2025-11-24 05:34:40,658 | INFO     | intersect: -19106930286.14423
[2025-11-24 00:35:13] 2025-11-24 05:34:40,658 | INFO     | chi2: 2.9594020960833176
[2025-11-24 00:35:13] 2025-11-24 05:34:40,658 | INFO     | current chi2=2.9594020960833176 (change=42.92208565784142 %)
[2025-11-24 00:35:13] 2025-11-24 05:34:40,659 | INFO     | sum of square deviations: 22322962012.884586
[2025-11-24 00:35:13] 2025-11-24 05:34:40,662 | INFO     | sum of deviations: 215396162000.5673
[2025-11-24 00:35:13] 2025-11-24 05:34:40,662 | INFO     | mean x: 1763949758.6634614
[2025-11-24 00:35:13] 2025-11-24 05:34:40,663 | INFO     | mean y: 3477894.425480769
[2025-11-24 00:35:13] 2025-11-24 05:34:40,663 | INFO     | intersect: -17017023585.55887
[2025-11-24 00:35:13] 2025-11-24 05:34:40,663 | INFO     | chi2: 2.894246849983029
[2025-11-24 00:35:13] 2025-11-24 05:34:40,663 | INFO     | current chi2=2.894246849983029 (change=2.201635465032599 %)
[2025-11-24 00:35:13] 2025-11-24 05:34:40,663 | INFO     | left removable region: 20
[2025-11-24 00:35:13] 2025-11-24 05:34:40,664 | INFO     | sum of square deviations: 19110093230.303806
[2025-11-24 00:35:13] 2025-11-24 05:34:40,667 | INFO     | sum of deviations: 347951219476.46844
[2025-11-24 00:35:13] 2025-11-24 05:34:40,667 | INFO     | mean x: 1763949728.164557
[2025-11-24 00:35:13] 2025-11-24 05:34:40,667 | INFO     | mean y: 3520044.7620253162
[2025-11-24 00:35:13] 2025-11-24 05:34:40,668 | INFO     | intersect: -32113982031.929058
[2025-11-24 00:35:13] 2025-11-24 05:34:40,668 | INFO     | chi2: 0.034243318846823995
[2025-11-24 00:35:13] 2025-11-24 05:34:40,668 | INFO     | current memory leak: 18.21 B/s (using 395 data points, chi2=0.03)
[2025-11-24 00:35:13] 2025-11-24 05:34:40,669 | INFO     | could have reported an average CPU frequency of 2418 MHz (18 samples)
[2025-11-24 00:35:13] 2025-11-24 05:34:40,669 | INFO     | ..............................
[2025-11-24 00:35:13] 2025-11-24 05:34:40,669 | INFO     | . Timing measurements:
[2025-11-24 00:35:13] 2025-11-24 05:34:40,669 | INFO     | . get job = 0 s
[2025-11-24 00:35:13] 2025-11-24 05:34:40,669 | INFO     | . initial setup = 2 s
[2025-11-24 00:35:13] 2025-11-24 05:34:40,669 | INFO     | . payload setup = 8 s
[2025-11-24 00:35:13] 2025-11-24 05:34:40,669 | INFO     | . stage-in = 0 s
[2025-11-24 00:35:13] 2025-11-24 05:34:40,669 | INFO     | . payload execution = 25979 s
[2025-11-24 00:35:13] 2025-11-24 05:34:40,669 | INFO     | . stage-out = 3 s
[2025-11-24 00:35:13] 2025-11-24 05:34:40,670 | INFO     | . log creation = 0 s
[2025-11-24 00:35:13] 2025-11-24 05:34:40,670 | INFO     | ..............................
[2025-11-24 00:35:13] 2025-11-24 05:34:40,750 | INFO     | 
[2025-11-24 00:35:13] 2025-11-24 05:34:40,750 | INFO     | job summary report
[2025-11-24 00:35:13] 2025-11-24 05:34:40,750 | INFO     | --------------------------------------------------
[2025-11-24 00:35:13] 2025-11-24 05:34:40,751 | INFO     | PanDA job id: 6895352297
[2025-11-24 00:35:13] 2025-11-24 05:34:40,751 | INFO     | task id: 47556137
[2025-11-24 00:35:13] 2025-11-24 05:34:40,751 | INFO     | errors: (none)
[2025-11-24 00:35:13] 2025-11-24 05:34:40,751 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 00:35:13] 2025-11-24 05:34:40,751 | INFO     | pilot state: finished 
[2025-11-24 00:35:13] 2025-11-24 05:34:40,751 | INFO     | transexitcode: 0
[2025-11-24 00:35:13] 2025-11-24 05:34:40,751 | INFO     | exeerrorcode: 0
[2025-11-24 00:35:13] 2025-11-24 05:34:40,751 | INFO     | exeerrordiag: 
[2025-11-24 00:35:13] 2025-11-24 05:34:40,751 | INFO     | exitcode: 0
[2025-11-24 00:35:13] 2025-11-24 05:34:40,751 | INFO     | exitmsg: OK
[2025-11-24 00:35:13] 2025-11-24 05:34:40,752 | INFO     | cpuconsumptiontime: 298474 s
[2025-11-24 00:35:13] 2025-11-24 05:34:40,752 | INFO     | nevents: 1000
[2025-11-24 00:35:13] 2025-11-24 05:34:40,752 | INFO     | neventsw: 0
[2025-11-24 00:35:13] 2025-11-24 05:34:40,752 | INFO     | pid: 28578
[2025-11-24 00:35:13] 2025-11-24 05:34:40,752 | INFO     | pgrp: 28578
[2025-11-24 00:35:13] 2025-11-24 05:34:40,752 | INFO     | corecount: 12
[2025-11-24 00:35:13] 2025-11-24 05:34:40,752 | INFO     | event service: False
[2025-11-24 00:35:13] 2025-11-24 05:34:40,752 | INFO     | sizes: {0: 2297979, 1: 2298835, 6: 2299097, 12: 2299125, 25991: 2336446, 25996: 2345440, 25998: 2345624, 26004: 2345898}
[2025-11-24 00:35:13] 2025-11-24 05:34:40,752 | INFO     | --------------------------------------------------
[2025-11-24 00:35:13] 2025-11-24 05:34:40,752 | INFO     | 
[2025-11-24 00:35:13] 2025-11-24 05:34:40,753 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-24 00:35:13] 2025-11-24 05:34:40,774 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 00:35:13] 2025-11-24 05:34:40,774 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 00:35:13] 2025-11-24 05:34:40,775 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 00:35:13] 2025-11-24 05:34:40,775 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 00:35:13] 2025-11-24 05:34:40,775 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 00:35:13] 2025-11-24 05:34:40,775 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 00:35:13] 2025-11-24 05:34:40,775 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 00:35:13] 2025-11-24 05:34:40,776 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 00:35:13] 2025-11-24 05:34:40,776 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 00:35:13] 2025-11-24 05:34:40,776 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 00:35:13] 2025-11-24 05:34:40,776 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 00:35:13] 2025-11-24 05:34:40,776 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 00:35:13] 2025-11-24 05:34:40,776 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 00:35:13] 2025-11-24 05:34:40,777 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 00:35:13] 2025-11-24 05:34:40,777 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 00:35:13] 2025-11-24 05:34:40,777 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 00:35:13] 2025-11-24 05:34:40,777 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 00:35:13] 2025-11-24 05:34:40,777 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 00:35:13] 2025-11-24 05:34:40,777 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 00:35:13] 2025-11-24 05:34:40,778 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 00:35:13] 2025-11-24 05:34:40,778 | INFO     | job 6895352297 has completed (purged errors)
[2025-11-24 00:35:13] 2025-11-24 05:34:40,778 | INFO     | overall cleanup function is called
[2025-11-24 00:35:13] 2025-11-24 05:34:41,794 | INFO     | --- collectZombieJob: --- 10, [28578]
[2025-11-24 00:35:13] 2025-11-24 05:34:41,794 | INFO     | zombie collector waiting for pid 28578
[2025-11-24 00:35:13] 2025-11-24 05:34:41,795 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 00:35:13] 2025-11-24 05:34:41,795 | INFO     | collected zombie processes
[2025-11-24 00:35:13] 2025-11-24 05:34:41,795 | INFO     | will attempt to kill all subprocesses of pid=28578
[2025-11-24 00:35:13] 2025-11-24 05:34:41,884 | INFO     | process IDs to be killed: [28578] (in reverse order)
[2025-11-24 00:35:13] 2025-11-24 05:34:41,935 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 00:35:13] 2025-11-24 05:34:41,936 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 00:35:13] 2025-11-24 05:34:41,939 | INFO     | did not find any defunct processes belonging to 28578
[2025-11-24 00:35:13] 2025-11-24 05:34:41,941 | INFO     | did not find any defunct processes belonging to 28578
[2025-11-24 00:35:13] 2025-11-24 05:34:41,943 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 00:35:13] 2025-11-24 05:34:41,943 | INFO     | ready for new job
[2025-11-24 00:35:13] 2025-11-24 05:34:41,944 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 00:35:13] 2025-11-24 05:34:41,946 | INFO     | ***************************************
[2025-11-24 00:35:13] 2025-11-24 05:34:41,946 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 00:35:13] 2025-11-24 05:34:41,946 | INFO     | ***************************************
[2025-11-24 00:35:13] 2025-11-24 05:34:41,946 | INFO     | 
[2025-11-24 00:35:13] 2025-11-24 05:34:41,947 | INFO     | architecture information:
[2025-11-24 00:35:13] 2025-11-24 05:34:41,947 | INFO     | executing command: cat /etc/os-release
[2025-11-24 00:35:13] 2025-11-24 05:34:41,961 | INFO     | cat /etc/os-release:
[2025-11-24 00:35:13] NAME="CentOS Linux"
[2025-11-24 00:35:13] VERSION="7 (Core)"
[2025-11-24 00:35:13] ID="centos"
[2025-11-24 00:35:13] ID_LIKE="rhel fedora"
[2025-11-24 00:35:13] VERSION_ID="7"
[2025-11-24 00:35:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 00:35:13] ANSI_COLOR="0;31"
[2025-11-24 00:35:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 00:35:13] HOME_URL="https://www.centos.org/"
[2025-11-24 00:35:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 00:35:13] 
[2025-11-24 00:35:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 00:35:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 00:35:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 00:35:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 00:35:13] 
[2025-11-24 00:35:13] 2025-11-24 05:34:41,962 | INFO     | ***************************************
[2025-11-24 00:35:13] 2025-11-24 05:34:42,465 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-24 00:35:13] 2025-11-24 05:34:42,481 | INFO     | sufficient remaining disk space (28246540288 B)
[2025-11-24 00:35:13] 2025-11-24 05:34:42,481 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 00:35:13] 2025-11-24 05:34:42,482 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 00:35:13] 2025-11-24 05:34:42,482 | INFO     | update_server=False
[2025-11-24 00:35:13] 2025-11-24 05:34:42,482 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 00:35:13] 2025-11-24 05:34:42,482 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 00:35:13] 2025-11-24 05:34:42,579 | INFO     | all data control threads have been joined
[2025-11-24 00:35:13] 2025-11-24 05:34:42,929 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-24 00:35:13] 2025-11-24 05:34:42,929 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-24 00:35:13] 2025-11-24 05:34:42,930 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 00:35:13] 2025-11-24 05:34:42,930 | INFO     | will abort loop
[2025-11-24 00:35:13] 2025-11-24 05:34:43,126 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 00:35:13] 2025-11-24 05:34:43,221 | INFO     | all job control threads have been joined
[2025-11-24 00:35:13] 2025-11-24 05:34:43,367 | INFO     | all payload control threads have been joined
[2025-11-24 00:35:13] 2025-11-24 05:34:43,386 | INFO     | [monitor] cgroup control has ended
[2025-11-24 00:35:13] 2025-11-24 05:34:43,484 | INFO     | [job] retrieve thread has finished
[2025-11-24 00:35:13] 2025-11-24 05:34:43,488 | INFO     | [job] queue monitor thread has finished
[2025-11-24 00:35:13] 2025-11-24 05:34:43,529 | INFO     | [data] copytool_in thread has finished
[2025-11-24 00:35:13] 2025-11-24 05:34:43,585 | INFO     | [data] control thread has finished
[2025-11-24 00:35:13] 2025-11-24 05:34:43,837 | INFO     | [payload] validate_post thread has finished
[2025-11-24 00:35:13] 2025-11-24 05:34:43,933 | INFO     | [payload] failed_post thread has finished
[2025-11-24 00:35:13] 2025-11-24 05:34:43,935 | INFO     | [job] job monitor thread has finished
[2025-11-24 00:35:13] 2025-11-24 05:34:44,137 | INFO     | [job] validate thread has finished
[2025-11-24 00:35:13] 2025-11-24 05:34:44,226 | INFO     | [job] control thread has finished
[2025-11-24 00:35:13] 2025-11-24 05:34:44,235 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 00:35:13] 2025-11-24 05:34:44,332 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 00:35:13] 2025-11-24 05:34:44,372 | INFO     | [payload] control thread has finished
[2025-11-24 00:35:13] 2025-11-24 05:34:44,957 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 00:35:13] 2025-11-24 05:34:45,132 | INFO     | [data] copytool_out thread has finished
[2025-11-24 00:35:13] 2025-11-24 05:34:45,726 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 00:35:13] 2025-11-24 05:34:49,731 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 00:35:13] 2025-11-24 05:34:53,337 | INFO     | job.realtimelogging is not enabled
[2025-11-24 00:35:13] 2025-11-24 05:34:54,343 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 00:35:13] 2025-11-24 05:34:54,934 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140585653684032)>', '<ExcThread(monitor, started 140584916334336)>']
[2025-11-24 00:35:13] 2025-11-24 05:34:59,959 | INFO     | all workflow threads have been joined
[2025-11-24 00:35:13] 2025-11-24 05:34:59,959 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 00:35:13] 2025-11-24 05:34:59,959 | INFO     | traces error code: 0
[2025-11-24 00:35:13] 2025-11-24 05:34:59,960 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 00:35:13] 2025-11-24 05:35:13,618 | INFO     | PID=22090 has CPU usage=5.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 00:35:13] 2025-11-24 05:35:13,619 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 00:35:13] 2025-11-24 05:35:13,619 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 00:35:13] 2025-11-24 05:35:13,619 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 00:35:13] 2025-11-24 05:35:13,619 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 00:35:13] 2025-11-24 05:35:13,619 | INFO     | [monitor] control thread has ended
[2025-11-24 00:35:13] 2025-11-24 05:35:13,707 [wrapper] ==== pilot stdout END ====
[2025-11-24 00:35:13] 2025-11-24 05:35:13,710 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 00:35:13] 2025-11-24 05:35:13,714 [wrapper] pilotpid: 22090
[2025-11-24 00:35:13] 2025-11-24 05:35:13,717 [wrapper] Pilot exit status: 0
[2025-11-24 00:35:13] 2025-11-24 05:35:13,732 [wrapper] pandaids: 6895352297
[2025-11-24 00:35:13] 2025-11-24 05:35:13,773 [wrapper] cleanup supervisor_pilot 22665 22091
[2025-11-24 00:35:13] 2025-11-24 05:35:13,777 [wrapper] Test setup, not cleaning
[2025-11-24 00:35:13] 2025-11-24 05:35:13,782 [wrapper] apfmon messages muted
[2025-11-24 00:35:13] 2025-11-24 05:35:13,786 [wrapper] ==== wrapper stdout END ====
[2025-11-24 00:35:13] 2025-11-24 05:35:13,790 [wrapper] ==== wrapper stderr END ====
[2025-11-24 00:35:13]  *** Error codes and diagnostics ***
[2025-11-24 00:35:13]     "exeErrorCode": 0,
[2025-11-24 00:35:13]     "exeErrorDiag": "",
[2025-11-24 00:35:13]     "pilotErrorCode": 0,
[2025-11-24 00:35:13]     "pilotErrorDiag": "",
[2025-11-24 00:35:13]  *** Listing of results directory ***
[2025-11-24 00:35:13] total 1315596
[2025-11-24 00:35:13] -rw-r--r-- 1 boincer umatlas    576529 Nov 22 21:46 pilot3.tar.gz
[2025-11-24 00:35:13] -rw-r--r-- 1 boincer umatlas      5112 Nov 22 21:48 queuedata.json
[2025-11-24 00:35:13] -rwx------ 1 boincer umatlas     36292 Nov 22 21:49 runpilot2-wrapper.sh
[2025-11-24 00:35:13] -rw-r--r-- 1 boincer umatlas       100 Nov 23 17:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 00:35:13] -rwxr-xr-x 1 boincer umatlas      7986 Nov 23 17:20 run_atlas
[2025-11-24 00:35:13] -rw-r--r-- 1 boincer umatlas       105 Nov 23 17:20 job.xml
[2025-11-24 00:35:13] -rw-r--r-- 2 boincer umatlas 409244029 Nov 23 17:20 EVNT.47483658._000587.pool.root.1
[2025-11-24 00:35:13] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 17:20 start_atlas.sh
[2025-11-24 00:35:13] drwxrwx--x 2 boincer umatlas      4096 Nov 23 17:20 shared
[2025-11-24 00:35:13] -rw-r--r-- 2 boincer umatlas    590106 Nov 23 17:20 input.tar.gz
[2025-11-24 00:35:13] -rw-r--r-- 1 boincer umatlas         0 Nov 23 17:20 boinc_lockfile
[2025-11-24 00:35:13] -rw-r--r-- 1 boincer umatlas      2786 Nov 23 17:20 pandaJob.out
[2025-11-24 00:35:13] -rw------- 1 boincer umatlas        57 Nov 23 17:20 setup.sh.local
[2025-11-24 00:35:13] -rw------- 1 boincer umatlas    989786 Nov 23 17:20 agis_schedconf.cvmfs.json
[2025-11-24 00:35:13] drwx------ 5 boincer umatlas      4096 Nov 23 17:21 pilot3
[2025-11-24 00:35:13] -rw-r--r-- 1 boincer umatlas       533 Nov 24 00:25 boinc_task_state.xml
[2025-11-24 00:35:13] -rw-r--r-- 1 boincer umatlas      5956 Nov 24 00:28 init_data.xml
[2025-11-24 00:35:13] -rw------- 1 boincer umatlas 922305793 Nov 24 00:33 HITS.47556137._005826.pool.root.1
[2025-11-24 00:35:13] -rw------- 1 boincer umatlas      1062 Nov 24 00:34 memory_monitor_summary.json
[2025-11-24 00:35:13] -rw------- 1 boincer umatlas   1526164 Nov 24 00:34 agis_ddmendpoints.agis.ALL.json
[2025-11-24 00:35:13] -rw------- 1 boincer umatlas   2198155 Nov 24 00:34 log.47556137._005826.job.log.tgz.1
[2025-11-24 00:35:13] -rw------- 1 boincer umatlas      8676 Nov 24 00:34 heartbeat.json
[2025-11-24 00:35:13] -rw-r--r-- 1 boincer umatlas      8192 Nov 24 00:34 boinc_mmap_file
[2025-11-24 00:35:13] -rw-r--r-- 1 boincer umatlas        29 Nov 24 00:34 wrapper_checkpoint.txt
[2025-11-24 00:35:13] -rw------- 1 boincer umatlas       745 Nov 24 00:35 pilotlog.txt
[2025-11-24 00:35:13] -rw------- 1 boincer umatlas        95 Nov 24 00:35 pilot_heartbeat.json
[2025-11-24 00:35:13] -rw------- 1 boincer umatlas   3646861 Nov 24 00:35 log.47556137._005826.job.log.1
[2025-11-24 00:35:13] -rw------- 1 boincer umatlas       353 Nov 24 00:35 output.list
[2025-11-24 00:35:13] -rw-r--r-- 1 boincer umatlas       620 Nov 24 00:35 runtime_log
[2025-11-24 00:35:13] -rw------- 1 boincer umatlas   5867520 Nov 24 00:35 result.tar.gz
[2025-11-24 00:35:13] -rw------- 1 boincer umatlas       670 Nov 24 00:35 RYTNDmeLFh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm7OIKDmav94Hm.diag
[2025-11-24 00:35:13] -rw-r--r-- 1 boincer umatlas      9345 Nov 24 00:35 runtime_log.err
[2025-11-24 00:35:13] -rw-r--r-- 1 boincer umatlas     21296 Nov 24 00:35 stderr.txt
[2025-11-24 00:35:13] HITS file was successfully produced:
[2025-11-24 00:35:13] -rw------- 1 boincer umatlas 922305793 Nov 24 00:33 shared/HITS.pool.root.1
[2025-11-24 00:35:13]  *** Contents of shared directory: ***
[2025-11-24 00:35:13] total 1306684
[2025-11-24 00:35:13] -rw-r--r-- 2 boincer umatlas 409244029 Nov 23 17:20 ATLAS.root_0
[2025-11-24 00:35:13] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 17:20 start_atlas.sh
[2025-11-24 00:35:13] -rw-r--r-- 2 boincer umatlas    590106 Nov 23 17:20 input.tar.gz
[2025-11-24 00:35:13] -rw------- 1 boincer umatlas 922305793 Nov 24 00:33 HITS.pool.root.1
[2025-11-24 00:35:13] -rw------- 1 boincer umatlas   5867520 Nov 24 00:35 result.tar.gz
00:35:15 (18330): run_atlas exited; CPU time 291748.245868
00:35:15 (18330): called boinc_finish(0)

</stderr_txt>
]]>

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