Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:17:19 (4101344): wrapper (7.7.26015): starting
14:17:19 (4101344): wrapper: running run_atlas (--nthreads 12)
[2025-11-23 14:17:19] Arguments: --nthreads 12
[2025-11-23 14:17:19] Threads: 12
[2025-11-23 14:17:19] Checking for CVMFS
[2025-11-23 14:17:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 14:17:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 14:17:19] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 14:17:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 14:17:19] 2.11.5.0 2885516 24606 212144 153223 2 59 24130832 45568000 13633 130560 0 220883207 99.755 157193564 10512 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-23 14:17:19] CVMFS is ok
[2025-11-23 14:17:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 14:17:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 14:17:19] Further information can be found at the LHC@home message board.
[2025-11-23 14:17:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 14:17:19] Checking for apptainer binary...
[2025-11-23 14:17:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 14:17:19] Running /usr/bin/apptainer --version
[2025-11-23 14:17:19] apptainer version 1.4.1-1.el9
[2025-11-23 14:17:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 14:17:19] wns0089.triumf.lcg
[2025-11-23 14:17:19] apptainer works
[2025-11-23 14:17:19] Set ATHENA_PROC_NUMBER=12
[2025-11-23 14:17:19] Set ATHENA_CORE_NUMBER=12
[2025-11-23 14:17:19] Starting ATLAS job with PandaID=6895360332
[2025-11-23 14:17:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 14:21:36]  *** The last 200 lines of the pilot log: ***
[2025-11-23 14:21:36] 2025-11-23 22:20:47,466 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-23 14:21:36] 2025-11-23 22:20:47,467 | WARNING  | wrong length of table data, x=[1763936274.0], y=[1248.0] (must be same and length>=4)
[2025-11-23 14:21:36] 2025-11-23 22:20:47,468 | INFO     | could have reported an average CPU frequency of 2567 MHz (4 samples)
[2025-11-23 14:21:36] 2025-11-23 22:20:47,468 | INFO     | ..............................
[2025-11-23 14:21:36] 2025-11-23 22:20:47,468 | INFO     | . Timing measurements:
[2025-11-23 14:21:36] 2025-11-23 22:20:47,468 | INFO     | . get job = 0 s
[2025-11-23 14:21:36] 2025-11-23 22:20:47,468 | INFO     | . initial setup = 2 s
[2025-11-23 14:21:36] 2025-11-23 22:20:47,468 | INFO     | . payload setup = 5 s
[2025-11-23 14:21:36] 2025-11-23 22:20:47,468 | INFO     | . stage-in = 0 s
[2025-11-23 14:21:36] 2025-11-23 22:20:47,468 | INFO     | . payload execution = 52 s
[2025-11-23 14:21:36] 2025-11-23 22:20:47,468 | INFO     | . stage-out = 0 s
[2025-11-23 14:21:36] 2025-11-23 22:20:47,468 | INFO     | . log creation = 0 s
[2025-11-23 14:21:36] 2025-11-23 22:20:47,468 | INFO     | ..............................
[2025-11-23 14:21:36] 2025-11-23 22:20:47,468 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-23 14:21:36] 2025-11-23 22:20:47,468 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895360332/pilotlog.txt
[2025-11-23 14:21:36] 2025-11-23 22:20:47,479 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-23 14:21:36] - Log from pilotlog.txt -
[2025-11-23 14:21:36] 2025-11-23 22:20:47,465 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895360332/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 14:21:36] 2025-11-23 22:20:47,466 | INFO     | extracted standard info from prmon json
[2025-11-23 14:21:36] 2025-11-23 22:20:47,466 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 14:21:36] 2025-11-23 22:20:47,466 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 14:21:36] 2025-11-23 22:20:47,466 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-23 14:21:36] 2025-11-23 22:20:47,466 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-23 14:21:36] 2025-11-23 22:20:47,467 | WARNING  | wrong length of table data, x=[1763936274.0], y=[1248.0] (must be same and length>=4)
[2025-11-23 14:21:36] 2025-11-23 22:20:47,468 | INFO     | could have reported an average CPU frequency of 2567 MHz (4 samples)
[2025-11-23 14:21:36] 2025-11-23 22:20:47,468 | INFO     | ..............................
[2025-11-23 14:21:36] 2025-11-23 22:20:47,468 | INFO     | . Timing measurements:
[2025-11-23 14:21:36] 2025-11-23 22:20:47,468 | INFO     | . get job = 0 s
[2025-11-23 14:21:36] 2025-11-23 22:20:47,468 | INFO     | . initial setup = 2 s
[2025-11-23 14:21:36] 2025-11-23 22:20:47,468 | INFO     | . payload setup = 5 s
[2025-11-23 14:21:36] 2025-11-23 22:20:47,468 | INFO     | . stage-in = 0 s
[2025-11-23 14:21:36] 2025-11-23 22:20:47,468 | INFO     | . payload execution = 52 s
[2025-11-23 14:21:36] 2025-11-23 22:20:47,468 | INFO     | . stage-out = 0 s
[2025-11-23 14:21:36] 2025-11-23 22:20:47,468 | INFO     | . log creation = 0 s
[2025-11-23 14:21:36] 2025-11-23 22:20:47,468 | INFO     | ..............................
[2025-11-23 14:21:36] 2025-11-23 22:20:47,468 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-23 14:21:36] 2025-11-23 22:20:47,468 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895360332/pilotlog.txt
[2025-11-23 14:21:36] 2025-11-23 22:20:47,479 | WARNING  | 
[2025-11-23 14:21:36] [begin log extracts]
[2025-11-23 14:21:36] - Log from pilotlog.txt -
[2025-11-23 14:21:36] 2025-11-23 22:20:47,465 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895360332/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 14:21:36] 2025-11-23 22:20:47,466 | INFO     | extracted standard info from prmon json
[2025-11-23 14:21:36] 2025-11-23 22:20:47,466 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 14:21:36] 2025-11-23 22:20:47,466 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 14:21:36] 2025-11-23 22:20:47,466 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-23 14:21:36] 2025-11-23 22:20:47,466 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-23 14:21:36] 2025-11-23 22:20:47,467 | WARNING  | wrong length of table data, x=[1763936274.0], y=[1248.0] (must be same and length>=4)
[2025-11-23 14:21:36] 2025-11-23 22:20:47,468 | INFO     | could have reported an average CPU frequency of 2567 MHz (4 samples)
[2025-11-23 14:21:36] 2025-11-23 22:20:47,468 | INFO     | ..............................
[2025-11-23 14:21:36] 2025-11-23 22:20:47,468 | INFO     | . Timing measurements:
[2025-11-23 14:21:36] 2025-11-23 22:20:47,468 | INFO     | . get job = 0 s
[2025-11-23 14:21:36] 2025-11-23 22:20:47,468 | INFO     | . initial setup = 2 s
[2025-11-23 14:21:36] 2025-11-23 22:20:47,468 | INFO     | . payload setup = 5 s
[2025-11-23 14:21:36] 2025-11-23 22:20:47,468 | INFO     | . stage-in = 0 s
[2025-11-23 14:21:36] 2025-11-23 22:20:47,468 | INFO     | . payload execution = 52 s
[2025-11-23 14:21:36] 2025-11-23 22:20:47,468 | INFO     | . stage-out = 0 s
[2025-11-23 14:21:36] 2025-11-23 22:20:47,468 | INFO     | . log creation = 0 s
[2025-11-23 14:21:36] 2025-11-23 22:20:47,468 | INFO     | ..............................
[2025-11-23 14:21:36] 2025-11-23 22:20:47,468 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-23 14:21:36] 2025-11-23 22:20:47,468 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895360332/pilotlog.txt
[2025-11-23 14:21:36] [end log extracts]
[2025-11-23 14:21:36] 2025-11-23 22:20:47,480 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-23 14:21:36] 2025-11-23 22:20:47,480 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-23 14:21:36] 2025-11-23 22:20:47,584 | INFO     | 
[2025-11-23 14:21:36] 2025-11-23 22:20:47,584 | INFO     | job summary report
[2025-11-23 14:21:36] 2025-11-23 22:20:47,584 | INFO     | --------------------------------------------------
[2025-11-23 14:21:36] 2025-11-23 22:20:47,584 | INFO     | PanDA job id: 6895360332
[2025-11-23 14:21:36] 2025-11-23 22:20:47,584 | INFO     | task id: 47556137
[2025-11-23 14:21:36] 2025-11-23 22:20:47,584 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-23 14:18:37,843 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-23 14:21:36] 2025-11-23 22:20:47,584 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-23 14:21:36] 2025-11-23 22:20:47,584 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 14:21:36] 2025-11-23 22:20:47,584 | INFO     | pilot state: failed 
[2025-11-23 14:21:36] 2025-11-23 22:20:47,584 | INFO     | transexitcode: 65
[2025-11-23 14:21:36] 2025-11-23 22:20:47,584 | INFO     | exeerrorcode: 65
[2025-11-23 14:21:36] 2025-11-23 22:20:47,584 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-23 14:21:36] 2025-11-23 22:20:47,585 | INFO     | exitcode: 65
[2025-11-23 14:21:36] 2025-11-23 22:20:47,585 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-23 14:21:36] 2025-11-23 22:20:47,585 | INFO     | cpuconsumptiontime: 44 s
[2025-11-23 14:21:36] 2025-11-23 22:20:47,585 | INFO     | nevents: 0
[2025-11-23 14:21:36] 2025-11-23 22:20:47,585 | INFO     | neventsw: 0
[2025-11-23 14:21:36] 2025-11-23 22:20:47,585 | INFO     | pid: 4111569
[2025-11-23 14:21:36] 2025-11-23 22:20:47,585 | INFO     | pgrp: 4111569
[2025-11-23 14:21:36] 2025-11-23 22:20:47,585 | INFO     | corecount: 12
[2025-11-23 14:21:36] 2025-11-23 22:20:47,585 | INFO     | event service: False
[2025-11-23 14:21:36] 2025-11-23 22:20:47,585 | INFO     | sizes: {0: 2298798, 4: 2299060, 11: 2299088, 61: 2328772, 64: 2328772, 183: 2328966}
[2025-11-23 14:21:36] 2025-11-23 22:20:47,585 | INFO     | --------------------------------------------------
[2025-11-23 14:21:36] 2025-11-23 22:20:47,585 | INFO     | 
[2025-11-23 14:21:36] 2025-11-23 22:20:47,585 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-23 14:21:36] 2025-11-23 22:20:47,600 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 14:21:36] 2025-11-23 22:20:47,600 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 14:21:36] 2025-11-23 22:20:47,601 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 14:21:36] 2025-11-23 22:20:47,601 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 14:21:36] 2025-11-23 22:20:47,601 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 14:21:36] 2025-11-23 22:20:47,601 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 14:21:36] 2025-11-23 22:20:47,601 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 14:21:36] 2025-11-23 22:20:47,601 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 14:21:36] 2025-11-23 22:20:47,601 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 14:21:36] 2025-11-23 22:20:47,601 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 14:21:36] 2025-11-23 22:20:47,601 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 14:21:36] 2025-11-23 22:20:47,601 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 14:21:36] 2025-11-23 22:20:47,601 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 14:21:36] 2025-11-23 22:20:47,601 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 14:21:36] 2025-11-23 22:20:47,601 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 14:21:36] 2025-11-23 22:20:47,601 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 14:21:36] 2025-11-23 22:20:47,601 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 14:21:36] 2025-11-23 22:20:47,601 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 14:21:36] 2025-11-23 22:20:47,601 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 14:21:36] 2025-11-23 22:20:47,601 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 14:21:36] 2025-11-23 22:20:47,602 | INFO     | job 6895360332 has completed (purged errors)
[2025-11-23 14:21:36] 2025-11-23 22:20:47,602 | INFO     | overall cleanup function is called
[2025-11-23 14:21:36] 2025-11-23 22:20:48,609 | INFO     | --- collectZombieJob: --- 10, [4111569]
[2025-11-23 14:21:36] 2025-11-23 22:20:48,609 | INFO     | zombie collector waiting for pid 4111569
[2025-11-23 14:21:36] 2025-11-23 22:20:48,609 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 14:21:36] 2025-11-23 22:20:48,609 | INFO     | collected zombie processes
[2025-11-23 14:21:36] 2025-11-23 22:20:48,609 | INFO     | will attempt to kill all subprocesses of pid=4111569
[2025-11-23 14:21:36] 2025-11-23 22:20:48,776 | INFO     | process IDs to be killed: [4111569] (in reverse order)
[2025-11-23 14:21:36] 2025-11-23 22:20:48,843 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 14:21:36] 2025-11-23 22:20:48,843 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 14:21:36] 2025-11-23 22:20:48,850 | INFO     | did not find any defunct processes belonging to 4111569
[2025-11-23 14:21:36] 2025-11-23 22:20:48,857 | INFO     | did not find any defunct processes belonging to 4111569
[2025-11-23 14:21:36] 2025-11-23 22:20:48,858 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 14:21:36] 2025-11-23 22:20:48,858 | INFO     | ready for new job
[2025-11-23 14:21:36] 2025-11-23 22:20:48,859 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 14:21:36] 2025-11-23 22:20:48,860 | INFO     | ***************************************
[2025-11-23 14:21:36] 2025-11-23 22:20:48,860 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 14:21:36] 2025-11-23 22:20:48,860 | INFO     | ***************************************
[2025-11-23 14:21:36] 2025-11-23 22:20:48,860 | INFO     | 
[2025-11-23 14:21:36] 2025-11-23 22:20:48,862 | INFO     | architecture information:
[2025-11-23 14:21:36] 2025-11-23 22:20:48,862 | INFO     | executing command: cat /etc/os-release
[2025-11-23 14:21:36] 2025-11-23 22:20:48,874 | INFO     | cat /etc/os-release:
[2025-11-23 14:21:36] NAME="CentOS Linux"
[2025-11-23 14:21:36] VERSION="7 (Core)"
[2025-11-23 14:21:36] ID="centos"
[2025-11-23 14:21:36] ID_LIKE="rhel fedora"
[2025-11-23 14:21:36] VERSION_ID="7"
[2025-11-23 14:21:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 14:21:36] ANSI_COLOR="0;31"
[2025-11-23 14:21:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 14:21:36] HOME_URL="https://www.centos.org/"
[2025-11-23 14:21:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 14:21:36] 
[2025-11-23 14:21:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 14:21:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 14:21:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 14:21:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 14:21:36] 
[2025-11-23 14:21:36] 2025-11-23 22:20:48,875 | INFO     | ***************************************
[2025-11-23 14:21:36] 2025-11-23 22:20:49,377 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-23 14:21:36] 2025-11-23 22:20:49,390 | INFO     | sufficient remaining disk space (1731883696128 B)
[2025-11-23 14:21:36] 2025-11-23 22:20:49,390 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 14:21:36] 2025-11-23 22:20:49,390 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 14:21:36] 2025-11-23 22:20:49,390 | INFO     | update_server=False
[2025-11-23 14:21:36] 2025-11-23 22:20:49,390 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 14:21:36] 2025-11-23 22:20:49,391 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 14:21:36] 2025-11-23 22:20:49,391 | INFO     | aborting loop
[2025-11-23 14:21:36] 2025-11-23 22:20:49,391 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 14:21:36] 2025-11-23 22:20:49,391 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 14:21:36] 2025-11-23 22:20:49,896 | INFO     | all data control threads have been joined
[2025-11-23 14:21:36] 2025-11-23 22:20:50,286 | INFO     | all job control threads have been joined
[2025-11-23 14:21:36] 2025-11-23 22:20:50,395 | INFO     | [job] retrieve thread has finished
[2025-11-23 14:21:36] 2025-11-23 22:20:50,396 | INFO     | [job] queue monitor thread has finished
[2025-11-23 14:21:36] 2025-11-23 22:20:50,396 | INFO     | [job] job monitor thread has finished
[2025-11-23 14:21:36] 2025-11-23 22:20:50,713 | INFO     | all payload control threads have been joined
[2025-11-23 14:21:36] 2025-11-23 22:20:50,727 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 14:21:36] 2025-11-23 22:20:50,796 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 14:21:36] 2025-11-23 22:20:50,901 | INFO     | [data] control thread has finished
[2025-11-23 14:21:36] 2025-11-23 22:20:51,069 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 14:21:36] 2025-11-23 22:20:51,089 | INFO     | [payload] failed_post thread has finished
[2025-11-23 14:21:36] 2025-11-23 22:20:51,289 | INFO     | [job] control thread has finished
[2025-11-23 14:21:36] 2025-11-23 22:20:51,310 | INFO     | [data] copytool_in thread has finished
[2025-11-23 14:21:36] 2025-11-23 22:20:51,396 | INFO     | [data] copytool_out thread has finished
[2025-11-23 14:21:36] 2025-11-23 22:20:51,599 | INFO     | [job] validate thread has finished
[2025-11-23 14:21:36] 2025-11-23 22:20:51,654 | INFO     | [payload] validate_post thread has finished
[2025-11-23 14:21:36] 2025-11-23 22:20:51,719 | INFO     | [payload] control thread has finished
[2025-11-23 14:21:36] 2025-11-23 22:20:51,752 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 14:21:36] 2025-11-23 22:20:51,862 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 14:21:36] 2025-11-23 22:20:54,804 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 14:21:36] 2025-11-23 22:21:19,143 | INFO     | PID=4105023 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 14:21:36] 2025-11-23 22:21:19,144 | INFO     | .. there are 21 such processes running
[2025-11-23 14:21:36] 2025-11-23 22:21:19,144 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 14:21:36] 2025-11-23 22:21:19,144 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 14:21:36] 2025-11-23 22:21:19,144 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 14:21:36] 2025-11-23 22:21:28,935 | INFO     | [monitor] cgroup control has ended
[2025-11-23 14:21:36] 2025-11-23 22:21:30,771 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140321203943232)>', '<ExcThread(monitor, started 140320524195584)>']
[2025-11-23 14:21:36] 2025-11-23 22:21:31,214 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 14:21:36] 2025-11-23 22:21:31,214 | INFO     | [monitor] control thread has ended
[2025-11-23 14:21:36] 2025-11-23 22:21:35,796 | INFO     | all workflow threads have been joined
[2025-11-23 14:21:36] 2025-11-23 22:21:35,796 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 14:21:36] 2025-11-23 22:21:35,797 | INFO     | traces error code: 0
[2025-11-23 14:21:36] 2025-11-23 22:21:35,797 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 14:21:36] 2025-11-23 22:21:35,922 [wrapper] ==== pilot stdout END ====
[2025-11-23 14:21:36] 2025-11-23 22:21:35,926 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 14:21:36] 2025-11-23 22:21:35,928 [wrapper] pilotpid: 4105023
[2025-11-23 14:21:36] 2025-11-23 22:21:35,930 [wrapper] Pilot exit status: 0
[2025-11-23 14:21:36] 2025-11-23 22:21:35,937 [wrapper] pandaids: 6895360332
[2025-11-23 14:21:36] 2025-11-23 22:21:35,980 [wrapper] cleanup supervisor_pilot 4105029 4105024
[2025-11-23 14:21:36] 2025-11-23 22:21:35,982 [wrapper] Test setup, not cleaning
[2025-11-23 14:21:36] 2025-11-23 22:21:35,984 [wrapper] apfmon messages muted
[2025-11-23 14:21:36] 2025-11-23 22:21:35,986 [wrapper] ==== wrapper stdout END ====
[2025-11-23 14:21:36] 2025-11-23 22:21:35,988 [wrapper] ==== wrapper stderr END ====
[2025-11-23 14:21:36]  *** Error codes and diagnostics ***
[2025-11-23 14:21:36]     "exeErrorCode": 65,
[2025-11-23 14:21:36]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-23 14:21:36]     "pilotErrorCode": 1305,
[2025-11-23 14:21:36]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-23 14:21:36]  *** Listing of results directory ***
[2025-11-23 14:21:36] total 402540
[2025-11-23 14:21:36] -rw-r--r--. 1 boinc boinc    576529 Nov 23 05:20 pilot3.tar.gz
[2025-11-23 14:21:36] -rwx------. 1 boinc boinc     36292 Nov 23 05:24 runpilot2-wrapper.sh
[2025-11-23 14:21:36] -rw-r--r--. 1 boinc boinc      5112 Nov 23 05:24 queuedata.json
[2025-11-23 14:21:36] -rw-r--r--. 1 boinc boinc       100 Nov 23 14:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 14:21:36] -rwxr-xr-x. 1 boinc boinc      7986 Nov 23 14:17 run_atlas
[2025-11-23 14:21:36] -rw-r--r--. 1 boinc boinc       105 Nov 23 14:17 job.xml
[2025-11-23 14:21:36] -rw-r--r--. 2 boinc boinc 408002266 Nov 23 14:17 EVNT.47483658._000750.pool.root.1
[2025-11-23 14:21:36] -rw-r--r--. 1 boinc boinc      6595 Nov 23 14:17 init_data.xml
[2025-11-23 14:21:36] -rw-r--r--. 2 boinc boinc     15847 Nov 23 14:17 start_atlas.sh
[2025-11-23 14:21:36] drwxrwx--x. 2 boinc boinc      4096 Nov 23 14:17 shared
[2025-11-23 14:21:36] -rw-r--r--. 2 boinc boinc    590099 Nov 23 14:17 input.tar.gz
[2025-11-23 14:21:36] -rw-r--r--. 1 boinc boinc         0 Nov 23 14:17 boinc_lockfile
[2025-11-23 14:21:36] -rw-r--r--. 1 boinc boinc      2783 Nov 23 14:17 pandaJob.out
[2025-11-23 14:21:36] -rw-------. 1 boinc boinc    989786 Nov 23 14:17 agis_schedconf.cvmfs.json
[2025-11-23 14:21:36] -rw-------. 1 boinc boinc   1526164 Nov 23 14:17 agis_ddmendpoints.agis.ALL.json
[2025-11-23 14:21:36] drwx------. 5 boinc boinc      4096 Nov 23 14:17 pilot3
[2025-11-23 14:21:36] -rw-r--r--. 1 boinc boinc       523 Nov 23 14:18 boinc_task_state.xml
[2025-11-23 14:21:36] -rw-------. 1 boinc boinc       987 Nov 23 14:18 memory_monitor_summary.json
[2025-11-23 14:21:36] -rw-------. 1 boinc boinc     48819 Nov 23 14:18 log.47556137._007451.job.log.tgz.1
[2025-11-23 14:21:36] -rw-------. 1 boinc boinc        95 Nov 23 14:20 pilot_heartbeat.json
[2025-11-23 14:21:36] -rw-------. 1 boinc boinc     10323 Nov 23 14:20 heartbeat.json
[2025-11-23 14:21:36] -rw-r--r--. 1 boinc boinc      8192 Nov 23 14:21 boinc_mmap_file
[2025-11-23 14:21:36] -rw-r--r--. 1 boinc boinc        23 Nov 23 14:21 wrapper_checkpoint.txt
[2025-11-23 14:21:36] -rw-------. 1 boinc boinc      4823 Nov 23 14:21 pilotlog.txt
[2025-11-23 14:21:36] -rw-------. 1 boinc boinc     93009 Nov 23 14:21 log.47556137._007451.job.log.1
[2025-11-23 14:21:36] -rw-------. 1 boinc boinc       186 Nov 23 14:21 output.list
[2025-11-23 14:21:36] -rw-r--r--. 1 boinc boinc       620 Nov 23 14:21 runtime_log
[2025-11-23 14:21:36] -rw-------. 1 boinc boinc    163840 Nov 23 14:21 result.tar.gz
[2025-11-23 14:21:36] -rw-r--r--. 1 boinc boinc      8636 Nov 23 14:21 runtime_log.err
[2025-11-23 14:21:36] -rw-------. 1 boinc boinc       647 Nov 23 14:21 Oh0MDmiFPh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmLwKKDmlhajVm.diag
[2025-11-23 14:21:36] -rw-r--r--. 1 boinc boinc     22381 Nov 23 14:21 stderr.txt
[2025-11-23 14:21:36] No HITS result produced
[2025-11-23 14:21:36]  *** Contents of shared directory: ***
[2025-11-23 14:21:36] total 399200
[2025-11-23 14:21:36] -rw-r--r--. 2 boinc boinc 408002266 Nov 23 14:17 ATLAS.root_0
[2025-11-23 14:21:36] -rw-r--r--. 2 boinc boinc     15847 Nov 23 14:17 start_atlas.sh
[2025-11-23 14:21:36] -rw-r--r--. 2 boinc boinc    590099 Nov 23 14:17 input.tar.gz
[2025-11-23 14:21:36] -rw-------. 1 boinc boinc    163840 Nov 23 14:21 result.tar.gz
14:21:37 (4101344): run_atlas exited; CPU time 41.573354
14:21:37 (4101344): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN