Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:56:17 (3670303): wrapper (7.7.26015): starting
18:56:17 (3670303): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 18:56:17] Arguments: --nthreads 8
[2025-11-23 18:56:17] Threads: 8
[2025-11-23 18:56:17] Checking for CVMFS
[2025-11-23 18:56:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 18:56:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 18:56:17] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 18:56:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 18:56:18] 2.13.2.0 6902 31479 286860 153226 2 454 28453824 40960000 25561 16776704 0 104901028 99.593 109770392 39526 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 18:56:18] CVMFS is ok
[2025-11-23 18:56:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 18:56:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 18:56:18] Further information can be found at the LHC@home message board.
[2025-11-23 18:56:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 18:56:18] Checking for apptainer binary...
[2025-11-23 18:56:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 18:56:18] Running /usr/bin/apptainer --version
[2025-11-23 18:56:18] apptainer version 1.4.4-1.el9
[2025-11-23 18:56:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 18:56:18] c-212-6.aglt2.org
[2025-11-23 18:56:18] apptainer works
[2025-11-23 18:56:18] Set ATHENA_PROC_NUMBER=8
[2025-11-23 18:56:18] Set ATHENA_CORE_NUMBER=8
[2025-11-23 18:56:18] Starting ATLAS job with PandaID=6895338381
[2025-11-23 18:56:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 17:59:17]  *** The last 200 lines of the pilot log: ***
[2025-11-24 17:59:17] 2025-11-24 22:57:54,944 | INFO     | time since job start (82872s) is within the limit (172800.0s)
[2025-11-24 17:59:17] 2025-11-24 22:57:56,366 | INFO     | monitor loop #5071: job 0:6895338381 is in state 'finished'
[2025-11-24 17:59:17] 2025-11-24 22:57:56,366 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 17:59:17] 2025-11-24 22:57:56,955 | INFO     | time since job start (82874s) is within the limit (172800.0s)
[2025-11-24 17:59:17] 2025-11-24 22:57:58,874 | INFO     | monitor loop #5072: job 0:6895338381 is in state 'finished'
[2025-11-24 17:59:17] 2025-11-24 22:57:58,874 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 17:59:17] 2025-11-24 22:57:58,980 | INFO     | time since job start (82876s) is within the limit (172800.0s)
[2025-11-24 17:59:17] 2025-11-24 22:58:00,991 | INFO     | time since job start (82878s) is within the limit (172800.0s)
[2025-11-24 17:59:17] 2025-11-24 22:58:01,391 | INFO     | monitor loop #5073: job 0:6895338381 is in state 'finished'
[2025-11-24 17:59:17] 2025-11-24 22:58:01,391 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 17:59:17] 2025-11-24 22:58:02,999 | INFO     | time since job start (82880s) is within the limit (172800.0s)
[2025-11-24 17:59:17] 2025-11-24 22:58:03,907 | INFO     | monitor loop #5074: job 0:6895338381 is in state 'finished'
[2025-11-24 17:59:17] 2025-11-24 22:58:03,907 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 17:59:17] 2025-11-24 22:58:05,006 | INFO     | time since job start (82883s) is within the limit (172800.0s)
[2025-11-24 17:59:17] 2025-11-24 22:58:06,412 | INFO     | monitor loop #5075: job 0:6895338381 is in state 'finished'
[2025-11-24 17:59:17] 2025-11-24 22:58:06,433 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 17:59:17] 2025-11-24 22:58:06,497 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 17:59:17] 2025-11-24 22:58:06,532 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2955.8155625000004
[2025-11-24 17:59:17] 2025-11-24 22:58:06,580 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6895338381/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 17:59:17] 2025-11-24 22:58:06,581 | INFO     | extracted standard info from prmon json
[2025-11-24 17:59:17] 2025-11-24 22:58:06,581 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 17:59:17] 2025-11-24 22:58:06,581 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 17:59:17] 2025-11-24 22:58:06,691 | INFO     | fitting pss+swap vs Time
[2025-11-24 17:59:17] 2025-11-24 22:58:06,705 | INFO     | sum of square deviations: 776606190005.9908
[2025-11-24 17:59:17] 2025-11-24 22:58:06,856 | INFO     | sum of deviations: 2877881897988.579
[2025-11-24 17:59:17] 2025-11-24 22:58:06,856 | INFO     | mean x: 1763983648.6870399
[2025-11-24 17:59:17] 2025-11-24 22:58:06,856 | INFO     | mean y: 2944291.834315169
[2025-11-24 17:59:17] 2025-11-24 22:58:06,856 | INFO     | intersect: -6533877943.467616
[2025-11-24 17:59:17] 2025-11-24 22:58:06,858 | INFO     | chi2: 15.84261999910912
[2025-11-24 17:59:17] 2025-11-24 22:58:06,921 | INFO     | sum of square deviations: 768061801120.5107
[2025-11-24 17:59:17] 2025-11-24 22:58:07,052 | INFO     | time since job start (82885s) is within the limit (172800.0s)
[2025-11-24 17:59:17] 2025-11-24 22:58:07,068 | INFO     | sum of deviations: 3331772179428.3438
[2025-11-24 17:59:17] 2025-11-24 22:58:07,068 | INFO     | mean x: 1763983496.202513
[2025-11-24 17:59:17] 2025-11-24 22:58:07,068 | INFO     | mean y: 2952390.6045824094
[2025-11-24 17:59:17] 2025-11-24 22:58:07,068 | INFO     | intersect: -7649024480.324493
[2025-11-24 17:59:17] 2025-11-24 22:58:07,069 | INFO     | chi2: 12.722425537423796
[2025-11-24 17:59:17] 2025-11-24 22:58:07,070 | INFO     | current chi2=12.722425537423796 (change=19.694939737624097 %)
[2025-11-24 17:59:17] 2025-11-24 22:58:07,070 | INFO     | right removable region: 1352
[2025-11-24 17:59:17] 2025-11-24 22:58:07,075 | INFO     | sum of square deviations: 768058332660.5118
[2025-11-24 17:59:17] 2025-11-24 22:58:07,147 | INFO     | sum of deviations: 2392715703213.561
[2025-11-24 17:59:17] 2025-11-24 22:58:07,148 | INFO     | mean x: 1763983801.202513
[2025-11-24 17:59:17] 2025-11-24 22:58:07,148 | INFO     | mean y: 2952945.4249815224
[2025-11-24 17:59:17] 2025-11-24 22:58:07,148 | INFO     | intersect: -5492348077.781534
[2025-11-24 17:59:17] 2025-11-24 22:58:07,149 | INFO     | chi2: 12.723083136868501
[2025-11-24 17:59:17] 2025-11-24 22:58:07,149 | INFO     | current chi2=12.723083136868501 (change=19.690788912541233 %)
[2025-11-24 17:59:17] 2025-11-24 22:58:07,149 | INFO     | left removable region: 10
[2025-11-24 17:59:17] 2025-11-24 22:58:07,155 | INFO     | sum of square deviations: 749478399774.1471
[2025-11-24 17:59:17] 2025-11-24 22:58:07,225 | INFO     | sum of deviations: 2787986600339.667
[2025-11-24 17:59:17] 2025-11-24 22:58:07,226 | INFO     | mean x: 1763983770.7369597
[2025-11-24 17:59:17] 2025-11-24 22:58:07,226 | INFO     | mean y: 2965252.0670640836
[2025-11-24 17:59:17] 2025-11-24 22:58:07,226 | INFO     | intersect: -6558882450.966533
[2025-11-24 17:59:17] 2025-11-24 22:58:07,227 | INFO     | chi2: 8.789619699606094
[2025-11-24 17:59:17] 2025-11-24 22:58:07,227 | INFO     | current memory leak: 3.72 B/s (using 1342 data points, chi2=8.79)
[2025-11-24 17:59:17] 2025-11-24 22:58:07,232 | INFO     | could have reported an average CPU frequency of 2990 MHz (49 samples)
[2025-11-24 17:59:17] 2025-11-24 22:58:07,233 | INFO     | ..............................
[2025-11-24 17:59:17] 2025-11-24 22:58:07,233 | INFO     | . Timing measurements:
[2025-11-24 17:59:17] 2025-11-24 22:58:07,233 | INFO     | . get job = 0 s
[2025-11-24 17:59:17] 2025-11-24 22:58:07,233 | INFO     | . initial setup = 3 s
[2025-11-24 17:59:17] 2025-11-24 22:58:07,233 | INFO     | . payload setup = 13 s
[2025-11-24 17:59:17] 2025-11-24 22:58:07,233 | INFO     | . stage-in = 0 s
[2025-11-24 17:59:17] 2025-11-24 22:58:07,233 | INFO     | . payload execution = 82797 s
[2025-11-24 17:59:17] 2025-11-24 22:58:07,233 | INFO     | . stage-out = 8 s
[2025-11-24 17:59:17] 2025-11-24 22:58:07,233 | INFO     | . log creation = 3 s
[2025-11-24 17:59:17] 2025-11-24 22:58:07,233 | INFO     | ..............................
[2025-11-24 17:59:17] 2025-11-24 22:58:07,599 | INFO     | 
[2025-11-24 17:59:17] 2025-11-24 22:58:07,600 | INFO     | job summary report
[2025-11-24 17:59:17] 2025-11-24 22:58:07,600 | INFO     | --------------------------------------------------
[2025-11-24 17:59:17] 2025-11-24 22:58:07,600 | INFO     | PanDA job id: 6895338381
[2025-11-24 17:59:17] 2025-11-24 22:58:07,601 | INFO     | task id: 47556137
[2025-11-24 17:59:17] 2025-11-24 22:58:07,601 | INFO     | errors: (none)
[2025-11-24 17:59:17] 2025-11-24 22:58:07,601 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 17:59:17] 2025-11-24 22:58:07,601 | INFO     | pilot state: finished 
[2025-11-24 17:59:17] 2025-11-24 22:58:07,601 | INFO     | transexitcode: 0
[2025-11-24 17:59:17] 2025-11-24 22:58:07,601 | INFO     | exeerrorcode: 0
[2025-11-24 17:59:17] 2025-11-24 22:58:07,601 | INFO     | exeerrordiag: 
[2025-11-24 17:59:17] 2025-11-24 22:58:07,601 | INFO     | exitcode: 0
[2025-11-24 17:59:17] 2025-11-24 22:58:07,601 | INFO     | exitmsg: OK
[2025-11-24 17:59:17] 2025-11-24 22:58:07,601 | INFO     | cpuconsumptiontime: 210716 s
[2025-11-24 17:59:17] 2025-11-24 22:58:07,601 | INFO     | nevents: 1000
[2025-11-24 17:59:17] 2025-11-24 22:58:07,601 | INFO     | neventsw: 0
[2025-11-24 17:59:17] 2025-11-24 22:58:07,601 | INFO     | pid: 3681037
[2025-11-24 17:59:17] 2025-11-24 22:58:07,602 | INFO     | pgrp: 3681037
[2025-11-24 17:59:17] 2025-11-24 22:58:07,602 | INFO     | corecount: 8
[2025-11-24 17:59:17] 2025-11-24 22:58:07,602 | INFO     | event service: False
[2025-11-24 17:59:17] 2025-11-24 22:58:07,602 | INFO     | sizes: {0: 2298584, 1: 2298783, 12: 2299073, 22: 2299073, 82815: 2363064, 82824: 2372849, 82825: 2373033, 82853: 2373279}
[2025-11-24 17:59:17] 2025-11-24 22:58:07,602 | INFO     | --------------------------------------------------
[2025-11-24 17:59:17] 2025-11-24 22:58:07,602 | INFO     | 
[2025-11-24 17:59:17] 2025-11-24 22:58:07,602 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-24 17:59:17] 2025-11-24 22:58:07,654 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 17:59:17] 2025-11-24 22:58:07,654 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 17:59:17] 2025-11-24 22:58:07,654 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 17:59:17] 2025-11-24 22:58:07,654 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 17:59:17] 2025-11-24 22:58:07,654 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 17:59:17] 2025-11-24 22:58:07,654 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 17:59:17] 2025-11-24 22:58:07,654 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 17:59:17] 2025-11-24 22:58:07,655 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 17:59:17] 2025-11-24 22:58:07,655 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 17:59:17] 2025-11-24 22:58:07,655 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 17:59:17] 2025-11-24 22:58:07,655 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 17:59:17] 2025-11-24 22:58:07,655 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 17:59:17] 2025-11-24 22:58:07,655 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 17:59:17] 2025-11-24 22:58:07,655 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 17:59:17] 2025-11-24 22:58:07,655 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 17:59:17] 2025-11-24 22:58:07,655 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 17:59:17] 2025-11-24 22:58:07,655 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 17:59:17] 2025-11-24 22:58:07,655 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 17:59:17] 2025-11-24 22:58:07,655 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 17:59:17] 2025-11-24 22:58:07,655 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 17:59:17] 2025-11-24 22:58:07,655 | INFO     | job 6895338381 has completed (purged errors)
[2025-11-24 17:59:17] 2025-11-24 22:58:07,656 | INFO     | overall cleanup function is called
[2025-11-24 17:59:17] 2025-11-24 22:58:08,673 | INFO     | --- collectZombieJob: --- 10, [3681037]
[2025-11-24 17:59:17] 2025-11-24 22:58:08,673 | INFO     | zombie collector waiting for pid 3681037
[2025-11-24 17:59:17] 2025-11-24 22:58:08,674 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 17:59:17] 2025-11-24 22:58:08,674 | INFO     | collected zombie processes
[2025-11-24 17:59:17] 2025-11-24 22:58:08,674 | INFO     | will attempt to kill all subprocesses of pid=3681037
[2025-11-24 17:59:17] 2025-11-24 22:58:10,895 | INFO     | process IDs to be killed: [3681037] (in reverse order)
[2025-11-24 17:59:17] 2025-11-24 22:58:13,240 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 17:59:17] 2025-11-24 22:58:13,240 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 17:59:17] 2025-11-24 22:58:13,373 | INFO     | did not find any defunct processes belonging to 3681037
[2025-11-24 17:59:17] 2025-11-24 22:58:13,484 | INFO     | did not find any defunct processes belonging to 3681037
[2025-11-24 17:59:17] 2025-11-24 22:58:13,568 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 17:59:17] 2025-11-24 22:58:13,569 | INFO     | ready for new job
[2025-11-24 17:59:17] 2025-11-24 22:58:13,569 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 17:59:17] 2025-11-24 22:58:13,575 | INFO     | ***************************************
[2025-11-24 17:59:17] 2025-11-24 22:58:13,581 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 17:59:17] 2025-11-24 22:58:13,582 | INFO     | ***************************************
[2025-11-24 17:59:17] 2025-11-24 22:58:13,582 | INFO     | 
[2025-11-24 17:59:17] 2025-11-24 22:58:13,595 | INFO     | architecture information:
[2025-11-24 17:59:17] 2025-11-24 22:58:13,613 | INFO     | executing command: cat /etc/os-release
[2025-11-24 17:59:17] 2025-11-24 22:58:13,842 | INFO     | cat /etc/os-release:
[2025-11-24 17:59:17] NAME="CentOS Linux"
[2025-11-24 17:59:17] VERSION="7 (Core)"
[2025-11-24 17:59:17] ID="centos"
[2025-11-24 17:59:17] ID_LIKE="rhel fedora"
[2025-11-24 17:59:17] VERSION_ID="7"
[2025-11-24 17:59:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 17:59:17] ANSI_COLOR="0;31"
[2025-11-24 17:59:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 17:59:17] HOME_URL="https://www.centos.org/"
[2025-11-24 17:59:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 17:59:17] 
[2025-11-24 17:59:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 17:59:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 17:59:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 17:59:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 17:59:17] 
[2025-11-24 17:59:17] 2025-11-24 22:58:13,842 | INFO     | ***************************************
[2025-11-24 17:59:17] 2025-11-24 22:58:14,346 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-24 17:59:17] 2025-11-24 22:58:14,518 | INFO     | sufficient remaining disk space (121071730688 B)
[2025-11-24 17:59:17] 2025-11-24 22:58:14,519 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 17:59:17] 2025-11-24 22:58:14,519 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 17:59:17] 2025-11-24 22:58:14,519 | INFO     | update_server=False
[2025-11-24 17:59:17] 2025-11-24 22:58:14,519 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 17:59:17] 2025-11-24 22:58:14,520 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 17:59:17] 2025-11-24 22:58:15,006 | INFO     | all payload control threads have been joined
[2025-11-24 17:59:17] 2025-11-24 22:58:15,044 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 17:59:17] 2025-11-24 22:58:15,045 | INFO     | aborting loop
[2025-11-24 17:59:17] 2025-11-24 22:58:15,107 | INFO     | all job control threads have been joined
[2025-11-24 17:59:17] 2025-11-24 22:58:15,513 | INFO     | all data control threads have been joined
[2025-11-24 17:59:17] 2025-11-24 22:58:15,550 | INFO     | [job] retrieve thread has finished
[2025-11-24 17:59:17] 2025-11-24 22:58:15,723 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 17:59:17] 2025-11-24 22:58:15,765 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 17:59:17] 2025-11-24 22:58:15,766 | INFO     | [data] copytool_in thread has finished
[2025-11-24 17:59:17] 2025-11-24 22:58:15,772 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 17:59:17] 2025-11-24 22:58:15,772 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 17:59:17] 2025-11-24 22:58:15,886 | INFO     | [job] validate thread has finished
[2025-11-24 17:59:17] 2025-11-24 22:58:16,012 | INFO     | [payload] control thread has finished
[2025-11-24 17:59:17] 2025-11-24 22:58:16,051 | INFO     | [job] job monitor thread has finished
[2025-11-24 17:59:17] 2025-11-24 22:58:16,113 | INFO     | [job] control thread has finished
[2025-11-24 17:59:17] 2025-11-24 22:58:16,179 | INFO     | [payload] failed_post thread has finished
[2025-11-24 17:59:17] 2025-11-24 22:58:16,462 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 17:59:17] 2025-11-24 22:58:16,519 | INFO     | [data] control thread has finished
[2025-11-24 17:59:17] 2025-11-24 22:58:16,528 | INFO     | [data] copytool_out thread has finished
[2025-11-24 17:59:17] 2025-11-24 22:58:17,030 | INFO     | [payload] validate_post thread has finished
[2025-11-24 17:59:17] 2025-11-24 22:58:17,167 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 17:59:17] 2025-11-24 22:58:17,468 | INFO     | [job] queue monitor thread has finished
[2025-11-24 17:59:17] 2025-11-24 22:58:21,176 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 17:59:17] 2025-11-24 22:58:41,160 | INFO     | PID=3674008 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 17:59:17] 2025-11-24 22:58:41,160 | INFO     | .. there are 25 such processes running
[2025-11-24 17:59:17] 2025-11-24 22:58:41,160 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 17:59:17] 2025-11-24 22:58:41,160 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 17:59:17] 2025-11-24 22:58:41,160 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 17:59:17] 2025-11-24 22:59:07,507 | INFO     | [monitor] cgroup control has ended
[2025-11-24 17:59:17] 2025-11-24 22:59:09,166 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139956340967232)>', '<ExcThread(monitor, started 139955233863424)>']
[2025-11-24 17:59:17] 2025-11-24 22:59:09,342 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 17:59:17] 2025-11-24 22:59:09,342 | INFO     | [monitor] control thread has ended
[2025-11-24 17:59:17] 2025-11-24 22:59:14,192 | INFO     | all workflow threads have been joined
[2025-11-24 17:59:17] 2025-11-24 22:59:14,192 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 17:59:17] 2025-11-24 22:59:14,192 | INFO     | traces error code: 0
[2025-11-24 17:59:17] 2025-11-24 22:59:14,193 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 17:59:17] 2025-11-24 22:59:15,775 [wrapper] ==== pilot stdout END ====
[2025-11-24 17:59:17] 2025-11-24 22:59:15,797 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 17:59:17] 2025-11-24 22:59:15,813 [wrapper] pilotpid: 3674008
[2025-11-24 17:59:17] 2025-11-24 22:59:15,817 [wrapper] Pilot exit status: 0
[2025-11-24 17:59:17] 2025-11-24 22:59:15,932 [wrapper] pandaids: 6895338381
[2025-11-24 17:59:17] 2025-11-24 22:59:16,359 [wrapper] cleanup supervisor_pilot 2970586 3674009
[2025-11-24 17:59:17] 2025-11-24 22:59:16,382 [wrapper] Test setup, not cleaning
[2025-11-24 17:59:17] 2025-11-24 22:59:16,413 [wrapper] apfmon messages muted
[2025-11-24 17:59:17] 2025-11-24 22:59:16,418 [wrapper] ==== wrapper stdout END ====
[2025-11-24 17:59:17] 2025-11-24 22:59:16,436 [wrapper] ==== wrapper stderr END ====
[2025-11-24 17:59:17]  *** Error codes and diagnostics ***
[2025-11-24 17:59:17]     "exeErrorCode": 0,
[2025-11-24 17:59:17]     "exeErrorDiag": "",
[2025-11-24 17:59:17]     "pilotErrorCode": 0,
[2025-11-24 17:59:17]     "pilotErrorDiag": "",
[2025-11-24 17:59:17]  *** Listing of results directory ***
[2025-11-24 17:59:17] total 1308824
[2025-11-24 17:59:17] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 03:43 pilot3.tar.gz
[2025-11-24 17:59:17] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 03:46 queuedata.json
[2025-11-24 17:59:17] -rwx------. 1 boincer umatlas     36292 Nov 22 03:47 runpilot2-wrapper.sh
[2025-11-24 17:59:17] -rw-r--r--. 1 boincer umatlas       100 Nov 23 18:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 17:59:17] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 23 18:56 run_atlas
[2025-11-24 17:59:17] -rw-r--r--. 1 boincer umatlas       105 Nov 23 18:56 job.xml
[2025-11-24 17:59:17] -rw-r--r--. 2 boincer umatlas 408645705 Nov 23 18:56 EVNT.47483658._000322.pool.root.1
[2025-11-24 17:59:17] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 18:56 start_atlas.sh
[2025-11-24 17:59:17] drwxrwx--x. 2 boincer umatlas      4096 Nov 23 18:56 shared
[2025-11-24 17:59:17] -rw-r--r--. 2 boincer umatlas    590108 Nov 23 18:56 input.tar.gz
[2025-11-24 17:59:17] -rw-r--r--. 1 boincer umatlas         0 Nov 23 18:56 boinc_lockfile
[2025-11-24 17:59:17] -rw-r--r--. 1 boincer umatlas      2784 Nov 23 18:56 pandaJob.out
[2025-11-24 17:59:17] -rw-------. 1 boincer umatlas        57 Nov 23 18:56 setup.sh.local
[2025-11-24 17:59:17] -rw-------. 1 boincer umatlas    989786 Nov 23 18:56 agis_schedconf.cvmfs.json
[2025-11-24 17:59:17] drwx------. 5 boincer umatlas      4096 Nov 23 18:56 pilot3
[2025-11-24 17:59:17] -rw-r--r--. 1 boincer umatlas       533 Nov 24 17:31 boinc_task_state.xml
[2025-11-24 17:59:17] -rw-r--r--. 1 boincer umatlas      6948 Nov 24 17:55 init_data.xml
[2025-11-24 17:59:17] -rw-------. 1 boincer umatlas 901741807 Nov 24 17:56 HITS.47556137._003186.pool.root.1
[2025-11-24 17:59:17] -rw-------. 1 boincer umatlas      1071 Nov 24 17:57 memory_monitor_summary.json
[2025-11-24 17:59:17] -rw-------. 1 boincer umatlas   1516227 Nov 24 17:57 agis_ddmendpoints.agis.ALL.json
[2025-11-24 17:59:17] -rw-------. 1 boincer umatlas   2411279 Nov 24 17:57 log.47556137._003186.job.log.tgz.1
[2025-11-24 17:59:17] -rw-------. 1 boincer umatlas        95 Nov 24 17:58 pilot_heartbeat.json
[2025-11-24 17:59:17] -rw-------. 1 boincer umatlas      8623 Nov 24 17:58 heartbeat.json
[2025-11-24 17:59:17] -rw-------. 1 boincer umatlas      4825 Nov 24 17:59 pilotlog.txt
[2025-11-24 17:59:17] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 17:59 boinc_mmap_file
[2025-11-24 17:59:17] -rw-r--r--. 1 boincer umatlas        29 Nov 24 17:59 wrapper_checkpoint.txt
[2025-11-24 17:59:17] -rw-------. 1 boincer umatlas  10552740 Nov 24 17:59 log.47556137._003186.job.log.1
[2025-11-24 17:59:17] -rw-------. 1 boincer umatlas       353 Nov 24 17:59 output.list
[2025-11-24 17:59:17] -rw-r--r--. 1 boincer umatlas       620 Nov 24 17:59 runtime_log
[2025-11-24 17:59:17] -rw-------. 1 boincer umatlas  12984320 Nov 24 17:59 result.tar.gz
[2025-11-24 17:59:17] -rw-r--r--. 1 boincer umatlas      9338 Nov 24 17:59 runtime_log.err
[2025-11-24 17:59:17] -rw-------. 1 boincer umatlas       664 Nov 24 17:59 CDkLDmbSyg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmY2HKDml7dgPo.diag
[2025-11-24 17:59:17] -rw-r--r--. 1 boincer umatlas     21774 Nov 24 17:59 stderr.txt
[2025-11-24 17:59:17] HITS file was successfully produced:
[2025-11-24 17:59:17] -rw-------. 1 boincer umatlas 901741807 Nov 24 17:56 shared/HITS.pool.root.1
[2025-11-24 17:59:17]  *** Contents of shared directory: ***
[2025-11-24 17:59:17] total 1292964
[2025-11-24 17:59:17] -rw-r--r--. 2 boincer umatlas 408645705 Nov 23 18:56 ATLAS.root_0
[2025-11-24 17:59:17] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 18:56 start_atlas.sh
[2025-11-24 17:59:17] -rw-r--r--. 2 boincer umatlas    590108 Nov 23 18:56 input.tar.gz
[2025-11-24 17:59:17] -rw-------. 1 boincer umatlas 901741807 Nov 24 17:56 HITS.pool.root.1
[2025-11-24 17:59:17] -rw-------. 1 boincer umatlas  12984320 Nov 24 17:59 result.tar.gz
17:59:18 (3670303): run_atlas exited; CPU time 212160.788453
17:59:18 (3670303): called boinc_finish(0)

</stderr_txt>
]]>

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