Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:38:57 (1378991): wrapper (7.7.26015): starting
20:38:57 (1378991): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 20:38:57] Arguments: --nthreads 8
[2025-11-23 20:38:57] Threads: 8
[2025-11-23 20:38:57] Checking for CVMFS
[2025-11-23 20:38:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 20:38:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 20:38:58] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 20:38:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 20:38:58] 2.13.2.0 6699 32308 266664 153228 2 352 34082995 40960000 22460 16776704 0 77264627 99.608 74596853 36775 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 20:38:58] CVMFS is ok
[2025-11-23 20:38:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 20:38:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 20:38:58] Further information can be found at the LHC@home message board.
[2025-11-23 20:38:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 20:38:58] Checking for apptainer binary...
[2025-11-23 20:38:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 20:38:58] Running /usr/bin/apptainer --version
[2025-11-23 20:38:58] apptainer version 1.4.4-1.el9
[2025-11-23 20:38:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 20:38:59] c-212-4.aglt2.org
[2025-11-23 20:38:59] apptainer works
[2025-11-23 20:38:59] Set ATHENA_PROC_NUMBER=8
[2025-11-23 20:38:59] Set ATHENA_CORE_NUMBER=8
[2025-11-23 20:38:59] Starting ATLAS job with PandaID=6895340324
[2025-11-23 20:38:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 00:18:35]  *** The last 200 lines of the pilot log: ***
[2025-11-25 00:18:36] 2025-11-25 05:17:18,568 | INFO     | time since job start (99464s) is within the limit (172800.0s)
[2025-11-25 00:18:36] 2025-11-25 05:17:20,576 | INFO     | time since job start (99466s) is within the limit (172800.0s)
[2025-11-25 00:18:36] 2025-11-25 05:17:20,985 | INFO     | monitor loop #6352: job 0:6895340324 is in state 'finished'
[2025-11-25 00:18:36] 2025-11-25 05:17:20,985 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 00:18:36] 2025-11-25 05:17:22,583 | INFO     | time since job start (99468s) is within the limit (172800.0s)
[2025-11-25 00:18:36] 2025-11-25 05:17:23,490 | INFO     | monitor loop #6353: job 0:6895340324 is in state 'finished'
[2025-11-25 00:18:36] 2025-11-25 05:17:23,490 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 00:18:36] 2025-11-25 05:17:24,590 | INFO     | time since job start (99470s) is within the limit (172800.0s)
[2025-11-25 00:18:36] 2025-11-25 05:17:25,995 | INFO     | monitor loop #6354: job 0:6895340324 is in state 'finished'
[2025-11-25 00:18:36] 2025-11-25 05:17:25,995 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 00:18:36] 2025-11-25 05:17:26,597 | INFO     | time since job start (99472s) is within the limit (172800.0s)
[2025-11-25 00:18:36] 2025-11-25 05:17:28,513 | INFO     | monitor loop #6355: job 0:6895340324 is in state 'finished'
[2025-11-25 00:18:36] 2025-11-25 05:17:28,513 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 00:18:36] 2025-11-25 05:17:28,604 | INFO     | time since job start (99474s) is within the limit (172800.0s)
[2025-11-25 00:18:36] 2025-11-25 05:17:29,597 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 00:18:36] 2025-11-25 05:17:29,629 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3127.5716354166675
[2025-11-25 00:18:36] 2025-11-25 05:17:29,699 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6895340324/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 00:18:36] 2025-11-25 05:17:29,700 | INFO     | extracted standard info from prmon json
[2025-11-25 00:18:36] 2025-11-25 05:17:29,700 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 00:18:36] 2025-11-25 05:17:29,700 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 00:18:36] 2025-11-25 05:17:29,808 | INFO     | fitting pss+swap vs Time
[2025-11-25 00:18:36] 2025-11-25 05:17:29,809 | INFO     | sum of square deviations: 1340464308872.2834
[2025-11-25 00:18:36] 2025-11-25 05:17:30,142 | INFO     | sum of deviations: 11352746136017.156
[2025-11-25 00:18:36] 2025-11-25 05:17:30,142 | INFO     | mean x: 1763998102.4573357
[2025-11-25 00:18:36] 2025-11-25 05:17:30,142 | INFO     | mean y: 2820269.822590546
[2025-11-25 00:18:36] 2025-11-25 05:17:30,142 | INFO     | intersect: -14936945383.812706
[2025-11-25 00:18:36] 2025-11-25 05:17:30,144 | INFO     | chi2: 25.22163358941669
[2025-11-25 00:18:36] 2025-11-25 05:17:30,145 | INFO     | sum of square deviations: 1328160132451.6333
[2025-11-25 00:18:36] 2025-11-25 05:17:30,661 | INFO     | time since job start (99476s) is within the limit (172800.0s)
[2025-11-25 00:18:36] 2025-11-25 05:17:30,684 | INFO     | sum of deviations: 11920289660448.332
[2025-11-25 00:18:36] 2025-11-25 05:17:30,684 | INFO     | mean x: 1763997949.9618227
[2025-11-25 00:18:36] 2025-11-25 05:17:30,684 | INFO     | mean y: 2827302.6988916257
[2025-11-25 00:18:36] 2025-11-25 05:17:30,684 | INFO     | intersect: -15829123988.571861
[2025-11-25 00:18:36] 2025-11-25 05:17:30,686 | INFO     | chi2: 21.640953755287615
[2025-11-25 00:18:36] 2025-11-25 05:17:30,686 | INFO     | current chi2=21.640953755287615 (change=14.19685930110242 %)
[2025-11-25 00:18:36] 2025-11-25 05:17:30,686 | INFO     | right removable region: 1623
[2025-11-25 00:18:36] 2025-11-25 05:17:30,706 | INFO     | sum of square deviations: 1328158684311.6338
[2025-11-25 00:18:36] 2025-11-25 05:17:31,027 | INFO     | sum of deviations: 10737118285990.41
[2025-11-25 00:18:36] 2025-11-25 05:17:31,027 | INFO     | mean x: 1763998254.9618227
[2025-11-25 00:18:36] 2025-11-25 05:17:31,027 | INFO     | mean y: 2827898.522783251
[2025-11-25 00:18:36] 2025-11-25 05:17:31,028 | INFO     | intersect: -14257710502.14448
[2025-11-25 00:18:36] 2025-11-25 05:17:31,029 | INFO     | chi2: 21.35437403281729
[2025-11-25 00:18:36] 2025-11-25 05:17:31,029 | INFO     | current chi2=21.35437403281729 (change=15.333104982629475 %)
[2025-11-25 00:18:36] 2025-11-25 05:17:31,029 | INFO     | left removable region: 10
[2025-11-25 00:18:36] 2025-11-25 05:17:31,030 | INFO     | sum of square deviations: 1301353608373.9717
[2025-11-25 00:18:36] 2025-11-25 05:17:31,056 | INFO     | monitor loop #6356: job 0:6895340324 is in state 'finished'
[2025-11-25 00:18:36] 2025-11-25 05:17:31,056 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 00:18:36] 2025-11-25 05:17:31,361 | INFO     | sum of deviations: 10815606354134.523
[2025-11-25 00:18:36] 2025-11-25 05:17:31,361 | INFO     | mean x: 1763998224.4717917
[2025-11-25 00:18:36] 2025-11-25 05:17:31,361 | INFO     | mean y: 2843704.044017359
[2025-11-25 00:18:36] 2025-11-25 05:17:31,361 | INFO     | intersect: -14657822146.1224
[2025-11-25 00:18:36] 2025-11-25 05:17:31,383 | INFO     | chi2: 13.690921320799562
[2025-11-25 00:18:36] 2025-11-25 05:17:31,383 | INFO     | current memory leak: 8.31 B/s (using 1613 data points, chi2=13.69)
[2025-11-25 00:18:36] 2025-11-25 05:17:31,385 | INFO     | could have reported an average CPU frequency of 3050 MHz (58 samples)
[2025-11-25 00:18:36] 2025-11-25 05:17:31,385 | INFO     | ..............................
[2025-11-25 00:18:36] 2025-11-25 05:17:31,385 | INFO     | . Timing measurements:
[2025-11-25 00:18:36] 2025-11-25 05:17:31,385 | INFO     | . get job = 0 s
[2025-11-25 00:18:36] 2025-11-25 05:17:31,385 | INFO     | . initial setup = 3 s
[2025-11-25 00:18:36] 2025-11-25 05:17:31,385 | INFO     | . payload setup = 21 s
[2025-11-25 00:18:36] 2025-11-25 05:17:31,385 | INFO     | . stage-in = 0 s
[2025-11-25 00:18:36] 2025-11-25 05:17:31,385 | INFO     | . payload execution = 99351 s
[2025-11-25 00:18:36] 2025-11-25 05:17:31,385 | INFO     | . stage-out = 12 s
[2025-11-25 00:18:36] 2025-11-25 05:17:31,386 | INFO     | . log creation = 5 s
[2025-11-25 00:18:36] 2025-11-25 05:17:31,386 | INFO     | ..............................
[2025-11-25 00:18:36] 2025-11-25 05:17:31,904 | INFO     | 
[2025-11-25 00:18:36] 2025-11-25 05:17:31,904 | INFO     | job summary report
[2025-11-25 00:18:36] 2025-11-25 05:17:31,904 | INFO     | --------------------------------------------------
[2025-11-25 00:18:36] 2025-11-25 05:17:31,904 | INFO     | PanDA job id: 6895340324
[2025-11-25 00:18:36] 2025-11-25 05:17:31,904 | INFO     | task id: 47556137
[2025-11-25 00:18:36] 2025-11-25 05:17:31,904 | INFO     | errors: (none)
[2025-11-25 00:18:36] 2025-11-25 05:17:31,904 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 00:18:36] 2025-11-25 05:17:31,904 | INFO     | pilot state: finished 
[2025-11-25 00:18:36] 2025-11-25 05:17:31,905 | INFO     | transexitcode: 0
[2025-11-25 00:18:36] 2025-11-25 05:17:31,905 | INFO     | exeerrorcode: 0
[2025-11-25 00:18:36] 2025-11-25 05:17:31,905 | INFO     | exeerrordiag: 
[2025-11-25 00:18:36] 2025-11-25 05:17:31,905 | INFO     | exitcode: 0
[2025-11-25 00:18:36] 2025-11-25 05:17:31,905 | INFO     | exitmsg: OK
[2025-11-25 00:18:36] 2025-11-25 05:17:31,905 | INFO     | cpuconsumptiontime: 205437 s
[2025-11-25 00:18:36] 2025-11-25 05:17:31,905 | INFO     | nevents: 1000
[2025-11-25 00:18:36] 2025-11-25 05:17:31,905 | INFO     | neventsw: 0
[2025-11-25 00:18:36] 2025-11-25 05:17:31,905 | INFO     | pid: 1394097
[2025-11-25 00:18:36] 2025-11-25 05:17:31,905 | INFO     | pgrp: 1394097
[2025-11-25 00:18:36] 2025-11-25 05:17:31,905 | INFO     | corecount: 8
[2025-11-25 00:18:36] 2025-11-25 05:17:31,905 | INFO     | event service: False
[2025-11-25 00:18:36] 2025-11-25 05:17:31,905 | INFO     | sizes: {0: 2298584, 1: 2298783, 12: 2298783, 15: 2299073, 23: 2299101, 99377: 2370045, 99378: 2370172, 99391: 2380013, 99396: 2380069, 99440: 2380315}
[2025-11-25 00:18:36] 2025-11-25 05:17:31,905 | INFO     | --------------------------------------------------
[2025-11-25 00:18:36] 2025-11-25 05:17:31,905 | INFO     | 
[2025-11-25 00:18:36] 2025-11-25 05:17:31,906 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-25 00:18:36] 2025-11-25 05:17:32,068 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 00:18:36] 2025-11-25 05:17:32,069 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 00:18:36] 2025-11-25 05:17:32,069 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 00:18:36] 2025-11-25 05:17:32,069 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 00:18:36] 2025-11-25 05:17:32,069 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 00:18:36] 2025-11-25 05:17:32,069 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 00:18:36] 2025-11-25 05:17:32,069 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 00:18:36] 2025-11-25 05:17:32,069 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 00:18:36] 2025-11-25 05:17:32,069 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 00:18:36] 2025-11-25 05:17:32,069 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 00:18:36] 2025-11-25 05:17:32,070 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 00:18:36] 2025-11-25 05:17:32,070 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 00:18:36] 2025-11-25 05:17:32,070 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 00:18:36] 2025-11-25 05:17:32,070 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 00:18:36] 2025-11-25 05:17:32,070 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 00:18:36] 2025-11-25 05:17:32,070 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 00:18:36] 2025-11-25 05:17:32,070 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 00:18:36] 2025-11-25 05:17:32,070 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 00:18:36] 2025-11-25 05:17:32,070 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 00:18:36] 2025-11-25 05:17:32,070 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 00:18:36] 2025-11-25 05:17:32,071 | INFO     | job 6895340324 has completed (purged errors)
[2025-11-25 00:18:36] 2025-11-25 05:17:32,071 | INFO     | overall cleanup function is called
[2025-11-25 00:18:36] 2025-11-25 05:17:33,218 | INFO     | --- collectZombieJob: --- 10, [1394097]
[2025-11-25 00:18:36] 2025-11-25 05:17:33,218 | INFO     | zombie collector waiting for pid 1394097
[2025-11-25 00:18:36] 2025-11-25 05:17:33,218 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 00:18:36] 2025-11-25 05:17:33,218 | INFO     | collected zombie processes
[2025-11-25 00:18:36] 2025-11-25 05:17:33,218 | INFO     | will attempt to kill all subprocesses of pid=1394097
[2025-11-25 00:18:36] 2025-11-25 05:17:35,658 | INFO     | process IDs to be killed: [1394097] (in reverse order)
[2025-11-25 00:18:36] 2025-11-25 05:17:36,663 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 00:18:36] 2025-11-25 05:17:36,663 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 00:18:36] 2025-11-25 05:17:36,805 | INFO     | did not find any defunct processes belonging to 1394097
[2025-11-25 00:18:36] 2025-11-25 05:17:36,921 | INFO     | did not find any defunct processes belonging to 1394097
[2025-11-25 00:18:36] 2025-11-25 05:17:36,943 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 00:18:36] 2025-11-25 05:17:36,943 | INFO     | ready for new job
[2025-11-25 00:18:36] 2025-11-25 05:17:36,943 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 00:18:36] 2025-11-25 05:17:36,963 | INFO     | ***************************************
[2025-11-25 00:18:36] 2025-11-25 05:17:36,963 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 00:18:36] 2025-11-25 05:17:36,963 | INFO     | ***************************************
[2025-11-25 00:18:36] 2025-11-25 05:17:36,963 | INFO     | 
[2025-11-25 00:18:36] 2025-11-25 05:17:37,005 | INFO     | architecture information:
[2025-11-25 00:18:36] 2025-11-25 05:17:37,017 | INFO     | executing command: cat /etc/os-release
[2025-11-25 00:18:36] 2025-11-25 05:17:37,139 | INFO     | cat /etc/os-release:
[2025-11-25 00:18:36] NAME="CentOS Linux"
[2025-11-25 00:18:36] VERSION="7 (Core)"
[2025-11-25 00:18:36] ID="centos"
[2025-11-25 00:18:36] ID_LIKE="rhel fedora"
[2025-11-25 00:18:36] VERSION_ID="7"
[2025-11-25 00:18:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 00:18:36] ANSI_COLOR="0;31"
[2025-11-25 00:18:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 00:18:36] HOME_URL="https://www.centos.org/"
[2025-11-25 00:18:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 00:18:36] 
[2025-11-25 00:18:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 00:18:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 00:18:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 00:18:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 00:18:36] 
[2025-11-25 00:18:36] 2025-11-25 05:17:37,139 | INFO     | ***************************************
[2025-11-25 00:18:36] 2025-11-25 05:17:37,643 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-25 00:18:36] 2025-11-25 05:17:37,804 | INFO     | sufficient remaining disk space (120669077504 B)
[2025-11-25 00:18:36] 2025-11-25 05:17:37,804 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 00:18:36] 2025-11-25 05:17:37,804 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 00:18:36] 2025-11-25 05:17:37,805 | INFO     | update_server=False
[2025-11-25 00:18:36] 2025-11-25 05:17:37,805 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 00:18:36] 2025-11-25 05:17:37,810 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 00:18:36] 2025-11-25 05:17:37,810 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 00:18:36] 2025-11-25 05:17:37,810 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 00:18:36] 2025-11-25 05:17:37,810 | INFO     | aborting loop
[2025-11-25 00:18:36] 2025-11-25 05:17:37,895 | INFO     | all payload control threads have been joined
[2025-11-25 00:18:36] 2025-11-25 05:17:38,098 | INFO     | all job control threads have been joined
[2025-11-25 00:18:36] 2025-11-25 05:17:38,597 | INFO     | all data control threads have been joined
[2025-11-25 00:18:36] 2025-11-25 05:17:38,819 | INFO     | [job] retrieve thread has finished
[2025-11-25 00:18:36] 2025-11-25 05:17:38,837 | INFO     | [job] queue monitor thread has finished
[2025-11-25 00:18:36] 2025-11-25 05:17:38,837 | INFO     | [job] job monitor thread has finished
[2025-11-25 00:18:36] 2025-11-25 05:17:38,901 | INFO     | [payload] control thread has finished
[2025-11-25 00:18:36] 2025-11-25 05:17:39,104 | INFO     | [job] control thread has finished
[2025-11-25 00:18:36] 2025-11-25 05:17:39,155 | INFO     | [payload] failed_post thread has finished
[2025-11-25 00:18:36] 2025-11-25 05:17:39,285 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 00:18:36] 2025-11-25 05:17:39,285 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 00:18:36] 2025-11-25 05:17:39,286 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 00:18:36] 2025-11-25 05:17:39,603 | INFO     | [data] control thread has finished
[2025-11-25 00:18:36] 2025-11-25 05:17:39,678 | INFO     | [job] validate thread has finished
[2025-11-25 00:18:36] 2025-11-25 05:17:39,717 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 00:18:36] 2025-11-25 05:17:39,722 | INFO     | [data] copytool_in thread has finished
[2025-11-25 00:18:36] 2025-11-25 05:17:39,728 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 00:18:36] 2025-11-25 05:17:39,728 | INFO     | [payload] validate_post thread has finished
[2025-11-25 00:18:36] 2025-11-25 05:17:39,842 | INFO     | [data] copytool_out thread has finished
[2025-11-25 00:18:36] 2025-11-25 05:17:43,726 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 00:18:36] 2025-11-25 05:18:08,524 | INFO     | PID=1383100 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 00:18:36] 2025-11-25 05:18:08,524 | INFO     | .. there are 27 such processes running
[2025-11-25 00:18:36] 2025-11-25 05:18:08,525 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 00:18:36] 2025-11-25 05:18:08,525 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 00:18:36] 2025-11-25 05:18:08,525 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 00:18:36] 2025-11-25 05:18:26,868 | INFO     | [monitor] cgroup control has ended
[2025-11-25 00:18:36] 2025-11-25 05:18:28,482 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139659539236672)>', '<ExcThread(monitor, started 139659266987776)>']
[2025-11-25 00:18:36] 2025-11-25 05:18:28,708 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 00:18:36] 2025-11-25 05:18:28,708 | INFO     | [monitor] control thread has ended
[2025-11-25 00:18:36] 2025-11-25 05:18:33,508 | INFO     | all workflow threads have been joined
[2025-11-25 00:18:36] 2025-11-25 05:18:33,508 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 00:18:36] 2025-11-25 05:18:33,508 | INFO     | traces error code: 0
[2025-11-25 00:18:36] 2025-11-25 05:18:33,508 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 00:18:36] 2025-11-25 05:18:34,283 [wrapper] ==== pilot stdout END ====
[2025-11-25 00:18:36] 2025-11-25 05:18:34,313 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 00:18:36] 2025-11-25 05:18:34,336 [wrapper] pilotpid: 1383100
[2025-11-25 00:18:36] 2025-11-25 05:18:34,370 [wrapper] Pilot exit status: 0
[2025-11-25 00:18:36] 2025-11-25 05:18:34,466 [wrapper] pandaids: 6895340324
[2025-11-25 00:18:36] 2025-11-25 05:18:35,233 [wrapper] cleanup supervisor_pilot 1664613 1383101
[2025-11-25 00:18:36] 2025-11-25 05:18:35,262 [wrapper] Test setup, not cleaning
[2025-11-25 00:18:36] 2025-11-25 05:18:35,324 [wrapper] apfmon messages muted
[2025-11-25 00:18:36] 2025-11-25 05:18:35,352 [wrapper] ==== wrapper stdout END ====
[2025-11-25 00:18:36] 2025-11-25 05:18:35,369 [wrapper] ==== wrapper stderr END ====
[2025-11-25 00:18:36]  *** Error codes and diagnostics ***
[2025-11-25 00:18:36]     "exeErrorCode": 0,
[2025-11-25 00:18:36]     "exeErrorDiag": "",
[2025-11-25 00:18:36]     "pilotErrorCode": 0,
[2025-11-25 00:18:36]     "pilotErrorDiag": "",
[2025-11-25 00:18:36]  *** Listing of results directory ***
[2025-11-25 00:18:36] total 1319444
[2025-11-25 00:18:36] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 07:20 pilot3.tar.gz
[2025-11-25 00:18:36] -rwx------. 1 boincer umatlas     36292 Nov 22 07:53 runpilot2-wrapper.sh
[2025-11-25 00:18:36] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 07:53 queuedata.json
[2025-11-25 00:18:36] -rw-r--r--. 1 boincer umatlas       100 Nov 23 20:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 00:18:36] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 23 20:38 run_atlas
[2025-11-25 00:18:36] -rw-r--r--. 1 boincer umatlas       105 Nov 23 20:38 job.xml
[2025-11-25 00:18:36] -rw-r--r--. 2 boincer umatlas 408872319 Nov 23 20:38 EVNT.47483658._000377.pool.root.1
[2025-11-25 00:18:36] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 20:38 start_atlas.sh
[2025-11-25 00:18:36] drwxrwx--x. 2 boincer umatlas      4096 Nov 23 20:38 shared
[2025-11-25 00:18:36] -rw-r--r--. 2 boincer umatlas    590098 Nov 23 20:38 input.tar.gz
[2025-11-25 00:18:36] -rw-r--r--. 1 boincer umatlas         0 Nov 23 20:38 boinc_lockfile
[2025-11-25 00:18:36] -rw-r--r--. 1 boincer umatlas      2784 Nov 23 20:38 pandaJob.out
[2025-11-25 00:18:36] -rw-------. 1 boincer umatlas        57 Nov 23 20:38 setup.sh.local
[2025-11-25 00:18:36] -rw-------. 1 boincer umatlas    989786 Nov 23 20:39 agis_schedconf.cvmfs.json
[2025-11-25 00:18:36] drwx------. 5 boincer umatlas      4096 Nov 23 20:39 pilot3
[2025-11-25 00:18:36] -rw-r--r--. 1 boincer umatlas       533 Nov 25 00:01 boinc_task_state.xml
[2025-11-25 00:18:36] -rw-r--r--. 1 boincer umatlas      6950 Nov 25 00:09 init_data.xml
[2025-11-25 00:18:36] -rw-------. 1 boincer umatlas 907271878 Nov 25 00:14 HITS.47556137._003739.pool.root.1
[2025-11-25 00:18:36] -rw-------. 1 boincer umatlas      1069 Nov 25 00:16 memory_monitor_summary.json
[2025-11-25 00:18:36] -rw-------. 1 boincer umatlas   1516227 Nov 25 00:16 agis_ddmendpoints.agis.ALL.json
[2025-11-25 00:18:36] -rw-------. 1 boincer umatlas   2629752 Nov 25 00:16 log.47556137._003739.job.log.tgz.1
[2025-11-25 00:18:36] -rw-------. 1 boincer umatlas      8620 Nov 25 00:17 heartbeat.json
[2025-11-25 00:18:36] -rw-------. 1 boincer umatlas        95 Nov 25 00:18 pilot_heartbeat.json
[2025-11-25 00:18:36] -rw-r--r--. 1 boincer umatlas        29 Nov 25 00:18 wrapper_checkpoint.txt
[2025-11-25 00:18:36] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 00:18 boinc_mmap_file
[2025-11-25 00:18:36] -rw-------. 1 boincer umatlas      4825 Nov 25 00:18 pilotlog.txt
[2025-11-25 00:18:36] -rw-------. 1 boincer umatlas  12896447 Nov 25 00:18 log.47556137._003739.job.log.1
[2025-11-25 00:18:36] -rw-------. 1 boincer umatlas       353 Nov 25 00:18 output.list
[2025-11-25 00:18:36] -rw-r--r--. 1 boincer umatlas       620 Nov 25 00:18 runtime_log
[2025-11-25 00:18:36] -rw-------. 1 boincer umatlas  15544320 Nov 25 00:18 result.tar.gz
[2025-11-25 00:18:36] -rw-------. 1 boincer umatlas       664 Nov 25 00:18 WOKMDmRI2g8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmiAKKDmh76rkn.diag
[2025-11-25 00:18:36] -rw-r--r--. 1 boincer umatlas      9338 Nov 25 00:18 runtime_log.err
[2025-11-25 00:18:36] -rw-r--r--. 1 boincer umatlas     17582 Nov 25 00:18 stderr.txt
[2025-11-25 00:18:36] HITS file was successfully produced:
[2025-11-25 00:18:36] -rw-------. 1 boincer umatlas 907271878 Nov 25 00:14 shared/HITS.pool.root.1
[2025-11-25 00:18:36]  *** Contents of shared directory: ***
[2025-11-25 00:18:36] total 1301084
[2025-11-25 00:18:36] -rw-r--r--. 2 boincer umatlas 408872319 Nov 23 20:38 ATLAS.root_0
[2025-11-25 00:18:36] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 20:38 start_atlas.sh
[2025-11-25 00:18:36] -rw-r--r--. 2 boincer umatlas    590098 Nov 23 20:38 input.tar.gz
[2025-11-25 00:18:36] -rw-------. 1 boincer umatlas 907271878 Nov 25 00:14 HITS.pool.root.1
[2025-11-25 00:18:36] -rw-------. 1 boincer umatlas  15544320 Nov 25 00:18 result.tar.gz
00:18:58 (1378991): run_atlas exited; CPU time 207552.031362
00:18:58 (1378991): called boinc_finish(0)

</stderr_txt>
]]>

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