Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
02:09:19 (814122): wrapper (7.7.26015): starting
02:09:19 (814122): wrapper: running run_atlas (--nthreads 3)
[2025-11-25 02:09:19] Arguments: --nthreads 3
[2025-11-25 02:09:19] Threads: 3
[2025-11-25 02:09:19] Checking for CVMFS
[2025-11-25 02:09:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 02:09:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 02:09:19] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 02:09:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 02:09:20] 2.12.7.0 3613689 4462 45004 153264 2 90 4688955 6144000 6068 130560 0 16184339 99.965 623773 726 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-25 02:09:20] CVMFS is ok
[2025-11-25 02:09:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 02:09:20] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-25 02:09:20] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-25 02:09:20] Further information can be found at the LHC@home message board.
[2025-11-25 02:09:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 02:09:20] Checking for apptainer binary...
[2025-11-25 02:09:20] apptainer is not installed, using version from CVMFS
[2025-11-25 02:09:20] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 02:09:20] biggy
[2025-11-25 02:09:20] apptainer works
[2025-11-25 02:09:20] Set ATHENA_PROC_NUMBER=3
[2025-11-25 02:09:20] Set ATHENA_CORE_NUMBER=3
[2025-11-25 02:09:20] Starting ATLAS job with PandaID=6895334251
[2025-11-25 02:09:20] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/single_8TB/boinc-client/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 10:57:22]  *** The last 200 lines of the pilot log: ***
[2025-11-25 10:57:22] 2025-11-25 09:56:45,940 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-11-25 10:57:22] 2025-11-25 09:56:46,345 | WARNING  | process 833865 can no longer be monitored (due to stat problems) - aborting
[2025-11-25 10:57:22] 2025-11-25 09:56:46,345 | INFO     | using path: /single_8TB/boinc-client/slots/9/PanDA_Pilot-6895334251/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 10:57:22] 2025-11-25 09:56:46,414 | INFO     | number of running child processes to parent process 833865: 1
[2025-11-25 10:57:22] 2025-11-25 09:56:46,414 | INFO     | maximum number of monitored processes: 8
[2025-11-25 10:57:22] 2025-11-25 09:56:46,432 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 10:57:22] 2025-11-25 09:56:46,432 | INFO     | job 6895334251 has state=finished
[2025-11-25 10:57:22] 2025-11-25 09:56:46,432 | INFO     | preparing for final server update for job 6895334251 in state='finished'
[2025-11-25 10:57:22] 2025-11-25 09:56:46,432 | INFO     | this job has now completed (state=finished)
[2025-11-25 10:57:22] 2025-11-25 09:56:46,433 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-25 10:57:22] 2025-11-25 09:56:46,433 | INFO     | log transfer has been attempted: DONE
[2025-11-25 10:57:22] 2025-11-25 09:56:46,433 | INFO     | job 6895334251 has finished - writing final server update
[2025-11-25 10:57:22] 2025-11-25 09:56:46,433 | INFO     | total number of processed events: 1000 (read)
[2025-11-25 10:57:22] 2025-11-25 09:56:46,433 | INFO     | executing command: lscpu
[2025-11-25 10:57:22] 2025-11-25 09:56:46,445 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-25 10:57:22] 2025-11-25 09:56:46,598 | INFO     | time since job start (31641s) is within the limit (172800.0s)
[2025-11-25 10:57:22] 2025-11-25 09:56:47,788 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-25 10:57:22] 2025-11-25 09:56:47,790 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 5304.5233125
[2025-11-25 10:57:22] 2025-11-25 09:56:47,793 | INFO     | using path: /single_8TB/boinc-client/slots/9/PanDA_Pilot-6895334251/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 10:57:22] 2025-11-25 09:56:47,793 | INFO     | extracted standard info from prmon json
[2025-11-25 10:57:22] 2025-11-25 09:56:47,793 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 10:57:22] 2025-11-25 09:56:47,793 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 10:57:22] 2025-11-25 09:56:47,795 | INFO     | fitting pss+swap vs Time
[2025-11-25 10:57:22] 2025-11-25 09:56:47,796 | INFO     | sum of square deviations: 43348980220.0
[2025-11-25 10:57:22] 2025-11-25 09:56:47,797 | INFO     | sum of deviations: 2033042690394.9998
[2025-11-25 10:57:22] 2025-11-25 09:56:47,797 | INFO     | mean x: 1764048783.0
[2025-11-25 10:57:22] 2025-11-25 09:56:47,797 | INFO     | mean y: 4237334.516377649
[2025-11-25 10:57:22] 2025-11-25 09:56:47,797 | INFO     | intersect: -82728654317.76955
[2025-11-25 10:57:22] 2025-11-25 09:56:47,797 | INFO     | chi2: 16.97368685895629
[2025-11-25 10:57:22] 2025-11-25 09:56:47,798 | INFO     | sum of square deviations: 42108147652.5
[2025-11-25 10:57:22] 2025-11-25 09:56:47,799 | INFO     | sum of deviations: 2145864007402.0
[2025-11-25 10:57:22] 2025-11-25 09:56:47,799 | INFO     | mean x: 1764048630.5
[2025-11-25 10:57:22] 2025-11-25 09:56:47,799 | INFO     | mean y: 4251111.097276265
[2025-11-25 10:57:22] 2025-11-25 09:56:47,799 | INFO     | intersect: -89893041325.89256
[2025-11-25 10:57:22] 2025-11-25 09:56:47,800 | INFO     | chi2: 15.437158690740514
[2025-11-25 10:57:22] 2025-11-25 09:56:47,800 | INFO     | current chi2=15.437158690740514 (change=9.052412601832685 %)
[2025-11-25 10:57:22] 2025-11-25 09:56:47,800 | INFO     | right removable region: 513
[2025-11-25 10:57:22] 2025-11-25 09:56:47,800 | INFO     | sum of square deviations: 42108147652.5
[2025-11-25 10:57:22] 2025-11-25 09:56:47,802 | INFO     | sum of deviations: 1799095487223.0034
[2025-11-25 10:57:22] 2025-11-25 09:56:47,802 | INFO     | mean x: 1764048935.5
[2025-11-25 10:57:22] 2025-11-25 09:56:47,802 | INFO     | mean y: 4266050.673151751
[2025-11-25 10:57:22] 2025-11-25 09:56:47,802 | INFO     | intersect: -75365766972.14417
[2025-11-25 10:57:22] 2025-11-25 09:56:47,802 | INFO     | chi2: 14.341356745635895
[2025-11-25 10:57:22] 2025-11-25 09:56:47,802 | INFO     | current chi2=14.341356745635895 (change=15.50829902303416 %)
[2025-11-25 10:57:22] 2025-11-25 09:56:47,802 | INFO     | left removable region: 10
[2025-11-25 10:57:22] 2025-11-25 09:56:47,802 | INFO     | sum of square deviations: 39462142692.0
[2025-11-25 10:57:22] 2025-11-25 09:56:47,804 | INFO     | sum of deviations: 1723388605786.0005
[2025-11-25 10:57:22] 2025-11-25 09:56:47,804 | INFO     | mean x: 1764048905.0
[2025-11-25 10:57:22] 2025-11-25 09:56:47,804 | INFO     | mean y: 4302310.992047714
[2025-11-25 10:57:22] 2025-11-25 09:56:47,804 | INFO     | intersect: -77035148046.64366
[2025-11-25 10:57:22] 2025-11-25 09:56:47,804 | INFO     | chi2: 11.497242805404904
[2025-11-25 10:57:22] 2025-11-25 09:56:47,804 | INFO     | current memory leak: 43.67 B/s (using 503 data points, chi2=11.50)
[2025-11-25 10:57:22] 2025-11-25 09:56:47,805 | INFO     | could have reported an average CPU frequency of 5129 MHz (21 samples)
[2025-11-25 10:57:22] 2025-11-25 09:56:47,805 | INFO     | ..............................
[2025-11-25 10:57:22] 2025-11-25 09:56:47,805 | INFO     | . Timing measurements:
[2025-11-25 10:57:22] 2025-11-25 09:56:47,805 | INFO     | . get job = 0 s
[2025-11-25 10:57:22] 2025-11-25 09:56:47,805 | INFO     | . initial setup = 1 s
[2025-11-25 10:57:22] 2025-11-25 09:56:47,805 | INFO     | . payload setup = 2 s
[2025-11-25 10:57:22] 2025-11-25 09:56:47,805 | INFO     | . stage-in = 0 s
[2025-11-25 10:57:22] 2025-11-25 09:56:47,805 | INFO     | . payload execution = 31618 s
[2025-11-25 10:57:22] 2025-11-25 09:56:47,805 | INFO     | . stage-out = 2 s
[2025-11-25 10:57:22] 2025-11-25 09:56:47,805 | INFO     | . log creation = 0 s
[2025-11-25 10:57:22] 2025-11-25 09:56:47,805 | INFO     | ..............................
[2025-11-25 10:57:22] 2025-11-25 09:56:47,882 | INFO     | 
[2025-11-25 10:57:22] 2025-11-25 09:56:47,882 | INFO     | job summary report
[2025-11-25 10:57:22] 2025-11-25 09:56:47,882 | INFO     | --------------------------------------------------
[2025-11-25 10:57:22] 2025-11-25 09:56:47,882 | INFO     | PanDA job id: 6895334251
[2025-11-25 10:57:22] 2025-11-25 09:56:47,882 | INFO     | task id: 47556137
[2025-11-25 10:57:22] 2025-11-25 09:56:47,882 | INFO     | errors: (none)
[2025-11-25 10:57:22] 2025-11-25 09:56:47,882 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 10:57:22] 2025-11-25 09:56:47,883 | INFO     | pilot state: finished 
[2025-11-25 10:57:22] 2025-11-25 09:56:47,883 | INFO     | transexitcode: 0
[2025-11-25 10:57:22] 2025-11-25 09:56:47,883 | INFO     | exeerrorcode: 0
[2025-11-25 10:57:22] 2025-11-25 09:56:47,883 | INFO     | exeerrordiag: 
[2025-11-25 10:57:22] 2025-11-25 09:56:47,883 | INFO     | exitcode: 0
[2025-11-25 10:57:22] 2025-11-25 09:56:47,883 | INFO     | exitmsg: OK
[2025-11-25 10:57:22] 2025-11-25 09:56:47,883 | INFO     | cpuconsumptiontime: 93973 s
[2025-11-25 10:57:22] 2025-11-25 09:56:47,883 | INFO     | nevents: 1000
[2025-11-25 10:57:22] 2025-11-25 09:56:47,883 | INFO     | neventsw: 0
[2025-11-25 10:57:22] 2025-11-25 09:56:47,883 | INFO     | pid: 833865
[2025-11-25 10:57:22] 2025-11-25 09:56:47,883 | INFO     | pgrp: 833865
[2025-11-25 10:57:22] 2025-11-25 09:56:47,883 | INFO     | corecount: 3
[2025-11-25 10:57:22] 2025-11-25 09:56:47,883 | INFO     | event service: False
[2025-11-25 10:57:22] 2025-11-25 09:56:47,883 | INFO     | sizes: {0: 2284319, 3: 2284581, 11: 2284609, 31625: 2324536, 31628: 2333611, 31630: 2333801}
[2025-11-25 10:57:22] 2025-11-25 09:56:47,883 | INFO     | --------------------------------------------------
[2025-11-25 10:57:22] 2025-11-25 09:56:47,883 | INFO     | 
[2025-11-25 10:57:22] 2025-11-25 09:56:47,883 | INFO     | executing command: ls -lF /single_8TB/boinc-client/slots/9
[2025-11-25 10:57:22] 2025-11-25 09:56:47,890 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 10:57:22] 2025-11-25 09:56:47,890 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 10:57:22] 2025-11-25 09:56:47,890 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 10:57:22] 2025-11-25 09:56:47,890 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 10:57:22] 2025-11-25 09:56:47,890 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 10:57:22] 2025-11-25 09:56:47,890 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 10:57:22] 2025-11-25 09:56:47,890 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 10:57:22] 2025-11-25 09:56:47,890 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 10:57:22] 2025-11-25 09:56:47,890 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 10:57:22] 2025-11-25 09:56:47,890 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 10:57:22] 2025-11-25 09:56:47,890 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 10:57:22] 2025-11-25 09:56:47,890 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 10:57:22] 2025-11-25 09:56:47,890 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 10:57:22] 2025-11-25 09:56:47,890 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 10:57:22] 2025-11-25 09:56:47,890 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 10:57:22] 2025-11-25 09:56:47,890 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 10:57:22] 2025-11-25 09:56:47,890 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 10:57:22] 2025-11-25 09:56:47,890 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 10:57:22] 2025-11-25 09:56:47,890 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 10:57:22] 2025-11-25 09:56:47,890 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 10:57:22] 2025-11-25 09:56:47,891 | INFO     | job 6895334251 has completed (purged errors)
[2025-11-25 10:57:22] 2025-11-25 09:56:47,891 | INFO     | overall cleanup function is called
[2025-11-25 10:57:22] 2025-11-25 09:56:48,900 | INFO     | --- collectZombieJob: --- 10, [833865]
[2025-11-25 10:57:22] 2025-11-25 09:56:48,900 | INFO     | zombie collector waiting for pid 833865
[2025-11-25 10:57:22] 2025-11-25 09:56:48,900 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 10:57:22] 2025-11-25 09:56:48,900 | INFO     | collected zombie processes
[2025-11-25 10:57:22] 2025-11-25 09:56:48,900 | INFO     | will attempt to kill all subprocesses of pid=833865
[2025-11-25 10:57:22] 2025-11-25 09:56:48,975 | INFO     | process IDs to be killed: [833865] (in reverse order)
[2025-11-25 10:57:22] 2025-11-25 09:56:49,010 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 10:57:22] 2025-11-25 09:56:49,010 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 10:57:22] 2025-11-25 09:56:49,013 | INFO     | did not find any defunct processes belonging to 833865
[2025-11-25 10:57:22] 2025-11-25 09:56:49,015 | INFO     | did not find any defunct processes belonging to 833865
[2025-11-25 10:57:22] 2025-11-25 09:56:49,016 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 10:57:22] 2025-11-25 09:56:49,016 | INFO     | ready for new job
[2025-11-25 10:57:22] 2025-11-25 09:56:49,016 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 10:57:22] 2025-11-25 09:56:49,016 | INFO     | ***************************************
[2025-11-25 10:57:22] 2025-11-25 09:56:49,017 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 10:57:22] 2025-11-25 09:56:49,017 | INFO     | ***************************************
[2025-11-25 10:57:22] 2025-11-25 09:56:49,017 | INFO     | 
[2025-11-25 10:57:22] 2025-11-25 09:56:49,017 | INFO     | architecture information:
[2025-11-25 10:57:22] 2025-11-25 09:56:49,017 | INFO     | executing command: cat /etc/os-release
[2025-11-25 10:57:22] 2025-11-25 09:56:49,023 | INFO     | cat /etc/os-release:
[2025-11-25 10:57:22] NAME="CentOS Linux"
[2025-11-25 10:57:22] VERSION="7 (Core)"
[2025-11-25 10:57:22] ID="centos"
[2025-11-25 10:57:22] ID_LIKE="rhel fedora"
[2025-11-25 10:57:22] VERSION_ID="7"
[2025-11-25 10:57:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 10:57:22] ANSI_COLOR="0;31"
[2025-11-25 10:57:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 10:57:22] HOME_URL="https://www.centos.org/"
[2025-11-25 10:57:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 10:57:22] 
[2025-11-25 10:57:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 10:57:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 10:57:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 10:57:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 10:57:22] 
[2025-11-25 10:57:22] 2025-11-25 09:56:49,024 | INFO     | ***************************************
[2025-11-25 10:57:22] 2025-11-25 09:56:49,525 | INFO     | executing command: df -mP /single_8TB/boinc-client/slots/9
[2025-11-25 10:57:22] 2025-11-25 09:56:49,533 | INFO     | sufficient remaining disk space (956994420736 B)
[2025-11-25 10:57:22] 2025-11-25 09:56:49,533 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 10:57:22] 2025-11-25 09:56:49,533 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 10:57:22] 2025-11-25 09:56:49,533 | INFO     | update_server=False
[2025-11-25 10:57:22] 2025-11-25 09:56:49,533 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 10:57:22] 2025-11-25 09:56:49,533 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 10:57:22] 2025-11-25 09:56:49,533 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 10:57:22] 2025-11-25 09:56:49,843 | INFO     | all job control threads have been joined
[2025-11-25 10:57:22] 2025-11-25 09:56:49,921 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 10:57:22] 2025-11-25 09:56:49,921 | INFO     | aborting loop
[2025-11-25 10:57:22] 2025-11-25 09:56:50,000 | INFO     | all data control threads have been joined
[2025-11-25 10:57:22] 2025-11-25 09:56:50,502 | INFO     | all payload control threads have been joined
[2025-11-25 10:57:22] 2025-11-25 09:56:50,538 | INFO     | [job] queue monitor thread has finished
[2025-11-25 10:57:22] 2025-11-25 09:56:50,541 | INFO     | [job] retrieve thread has finished
[2025-11-25 10:57:22] 2025-11-25 09:56:50,791 | INFO     | [payload] validate_post thread has finished
[2025-11-25 10:57:22] 2025-11-25 09:56:50,848 | INFO     | [job] control thread has finished
[2025-11-25 10:57:22] 2025-11-25 09:56:50,926 | INFO     | [job] job monitor thread has finished
[2025-11-25 10:57:22] 2025-11-25 09:56:50,948 | INFO     | [data] copytool_in thread has finished
[2025-11-25 10:57:22] 2025-11-25 09:56:50,953 | INFO     | [payload] failed_post thread has finished
[2025-11-25 10:57:22] 2025-11-25 09:56:51,005 | INFO     | [data] control thread has finished
[2025-11-25 10:57:22] 2025-11-25 09:56:51,507 | INFO     | [payload] control thread has finished
[2025-11-25 10:57:22] 2025-11-25 09:56:51,538 | INFO     | [data] copytool_out thread has finished
[2025-11-25 10:57:22] 2025-11-25 09:56:51,881 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 10:57:22] 2025-11-25 09:56:51,920 | INFO     | [job] validate thread has finished
[2025-11-25 10:57:22] 2025-11-25 09:56:51,921 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 10:57:22] 2025-11-25 09:56:51,964 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 10:57:22] 2025-11-25 09:56:51,991 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 10:57:22] 2025-11-25 09:56:55,969 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 10:57:22] 2025-11-25 09:57:00,496 | INFO     | job.realtimelogging is not enabled
[2025-11-25 10:57:22] 2025-11-25 09:57:01,501 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 10:57:22] 2025-11-25 09:57:16,801 | INFO     | [monitor] cgroup control has ended
[2025-11-25 10:57:22] 2025-11-25 09:57:17,487 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 136120168671040)>', '<ExcThread(monitor, started 136119115048704)>']
[2025-11-25 10:57:22] 2025-11-25 09:57:19,742 | INFO     | PID=824963 has CPU usage=7.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 10:57:22] 2025-11-25 09:57:19,743 | INFO     | .. there are 3 such processes running
[2025-11-25 10:57:22] 2025-11-25 09:57:19,743 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 10:57:22] 2025-11-25 09:57:19,743 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 10:57:22] 2025-11-25 09:57:19,743 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 10:57:22] 2025-11-25 09:57:19,743 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 10:57:22] 2025-11-25 09:57:19,743 | INFO     | [monitor] control thread has ended
[2025-11-25 10:57:22] 2025-11-25 09:57:22,512 | INFO     | all workflow threads have been joined
[2025-11-25 10:57:22] 2025-11-25 09:57:22,512 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 10:57:22] 2025-11-25 09:57:22,512 | INFO     | traces error code: 0
[2025-11-25 10:57:22] 2025-11-25 09:57:22,512 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 10:57:22] 2025-11-25 09:57:22,570 [wrapper] ==== pilot stdout END ====
[2025-11-25 10:57:22] 2025-11-25 09:57:22,571 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 10:57:22] 2025-11-25 09:57:22,572 [wrapper] pilotpid: 824963
[2025-11-25 10:57:22] 2025-11-25 09:57:22,573 [wrapper] Pilot exit status: 0
[2025-11-25 10:57:22] 2025-11-25 09:57:22,577 [wrapper] pandaids: 6895334251
[2025-11-25 10:57:22] 2025-11-25 09:57:22,600 [wrapper] cleanup supervisor_pilot 1440431 824964
[2025-11-25 10:57:22] 2025-11-25 09:57:22,601 [wrapper] Test setup, not cleaning
[2025-11-25 10:57:22] 2025-11-25 09:57:22,602 [wrapper] apfmon messages muted
[2025-11-25 10:57:22] 2025-11-25 09:57:22,603 [wrapper] ==== wrapper stdout END ====
[2025-11-25 10:57:22] 2025-11-25 09:57:22,604 [wrapper] ==== wrapper stderr END ====
[2025-11-25 10:57:22]  *** Error codes and diagnostics ***
[2025-11-25 10:57:22]     "exeErrorCode": 0,
[2025-11-25 10:57:22]     "exeErrorDiag": "",
[2025-11-25 10:57:22]     "pilotErrorCode": 0,
[2025-11-25 10:57:22]     "pilotErrorDiag": "",
[2025-11-25 10:57:22]  *** Listing of results directory ***
[2025-11-25 10:57:22] total 1311752
[2025-11-25 10:57:22] -rw-r--r-- 1 boinc boinc    576529 Nov 22 03:56 pilot3.tar.gz
[2025-11-25 10:57:22] -rwx------ 1 boinc boinc     36292 Nov 22 04:42 runpilot2-wrapper.sh
[2025-11-25 10:57:22] -rw-r--r-- 1 boinc boinc      5112 Nov 22 04:42 queuedata.json
[2025-11-25 10:57:22] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 02:09 run_atlas
[2025-11-25 10:57:22] -rw-r--r-- 1 boinc boinc       105 Nov 25 02:09 job.xml
[2025-11-25 10:57:22] -rw-r--r-- 1 boinc boinc       100 Nov 25 02:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 10:57:22] -rw-r--r-- 2 boinc boinc 409824032 Nov 25 02:09 EVNT.47483658._000234.pool.root.1
[2025-11-25 10:57:22] drwxrwx--x 2 boinc boinc         5 Nov 25 02:09 shared
[2025-11-25 10:57:22] -rw-r--r-- 2 boinc boinc    590102 Nov 25 02:09 input.tar.gz
[2025-11-25 10:57:22] -rw-r--r-- 1 boinc boinc         0 Nov 25 02:09 boinc_setup_complete
[2025-11-25 10:57:22] -rw-r--r-- 2 boinc boinc     15847 Nov 25 02:09 start_atlas.sh
[2025-11-25 10:57:22] -rw-r--r-- 1 boinc boinc         0 Nov 25 02:09 boinc_lockfile
[2025-11-25 10:57:22] -rw-r--r-- 1 boinc boinc      2785 Nov 25 02:09 pandaJob.out
[2025-11-25 10:57:22] -rw-r--r-- 1 boinc boinc      2146 Nov 25 02:09 stderr.txt
[2025-11-25 10:57:22] -rw------- 1 boinc boinc    991801 Nov 25 02:09 agis_schedconf.cvmfs.json
[2025-11-25 10:57:22] drwx------ 5 boinc boinc        22 Nov 25 02:09 pilot3
[2025-11-25 10:57:22] -rw-r--r-- 1 boinc boinc      6813 Nov 25 03:07 init_data.xml
[2025-11-25 10:57:22] -rw-r--r-- 1 boinc boinc       531 Nov 25 10:54 boinc_task_state.xml
[2025-11-25 10:57:22] -rw------- 1 boinc boinc 922610078 Nov 25 10:56 HITS.47556137._002308.pool.root.1
[2025-11-25 10:57:22] -rw------- 1 boinc boinc      1059 Nov 25 10:56 memory_monitor_summary.json
[2025-11-25 10:57:22] -rw------- 1 boinc boinc   1516240 Nov 25 10:56 agis_ddmendpoints.agis.ALL.json
[2025-11-25 10:57:22] -rw------- 1 boinc boinc   1218842 Nov 25 10:56 log.47556137._002308.job.log.tgz.1
[2025-11-25 10:57:22] -rw------- 1 boinc boinc      8598 Nov 25 10:56 heartbeat.json
[2025-11-25 10:57:22] -rw------- 1 boinc boinc        95 Nov 25 10:57 pilot_heartbeat.json
[2025-11-25 10:57:22] -rw-r--r-- 1 boinc boinc      8192 Nov 25 10:57 boinc_mmap_file
[2025-11-25 10:57:22] -rw-r--r-- 1 boinc boinc        28 Nov 25 10:57 wrapper_checkpoint.txt
[2025-11-25 10:57:22] -rw------- 1 boinc boinc      4905 Nov 25 10:57 pilotlog.txt
[2025-11-25 10:57:22] -rw------- 1 boinc boinc   4550129 Nov 25 10:57 log.47556137._002308.job.log.1
[2025-11-25 10:57:22] -rw------- 1 boinc boinc       353 Nov 25 10:57 output.list
[2025-11-25 10:57:22] -rw-r--r-- 1 boinc boinc       620 Nov 25 10:57 runtime_log
[2025-11-25 10:57:22] -rw------- 1 boinc boinc   5785600 Nov 25 10:57 result.tar.gz
[2025-11-25 10:57:22] -rw-r--r-- 1 boinc boinc      8940 Nov 25 10:57 runtime_log.err
[2025-11-25 10:57:22] -rw------- 1 boinc boinc       660 Nov 25 10:57 SRcMDmzgtg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmEuJKDm7mrWrn.diag
[2025-11-25 10:57:22] HITS file was successfully produced:
[2025-11-25 10:57:22] -rw------- 1 boinc boinc 922610078 Nov 25 10:56 shared/HITS.pool.root.1
[2025-11-25 10:57:22]  *** Contents of shared directory: ***
[2025-11-25 10:57:22] total 1302824
[2025-11-25 10:57:22] -rw-r--r-- 2 boinc boinc 409824032 Nov 25 02:09 ATLAS.root_0
[2025-11-25 10:57:22] -rw-r--r-- 2 boinc boinc    590102 Nov 25 02:09 input.tar.gz
[2025-11-25 10:57:22] -rw-r--r-- 2 boinc boinc     15847 Nov 25 02:09 start_atlas.sh
[2025-11-25 10:57:22] -rw------- 1 boinc boinc 922610078 Nov 25 10:56 HITS.pool.root.1
[2025-11-25 10:57:22] -rw------- 1 boinc boinc   5785600 Nov 25 10:57 result.tar.gz
10:57:24 (814122): run_atlas exited; CPU time 94211.938706
10:57:24 (814122): called boinc_finish(0)

</stderr_txt>
]]>

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