Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:07:03 (1563499): wrapper (7.7.26015): starting
16:07:03 (1563499): wrapper: running run_atlas (--nthreads 3)
[2025-11-26 16:07:03] Arguments: --nthreads 3
[2025-11-26 16:07:03] Threads: 3
[2025-11-26 16:07:03] Checking for CVMFS
[2025-11-26 16:07:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 16:07:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 16:07:04] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 16:07:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 16:07:04] 2.9.2.0 46827 11441 90160 153324 2 81 34515498 36864001 0 130560 0 4238804 99.933 574089 7795 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 16:07:04] CVMFS is ok
[2025-11-26 16:07:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 16:07:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 16:07:04] Further information can be found at the LHC@home message board.
[2025-11-26 16:07:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 16:07:04] Checking for apptainer binary...
[2025-11-26 16:07:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 16:07:04] Running /usr/bin/apptainer --version
[2025-11-26 16:07:04] apptainer version 1.4.1-1.1
[2025-11-26 16:07:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 16:07:04] magicA252
[2025-11-26 16:07:04] apptainer works
[2025-11-26 16:07:04] Set ATHENA_PROC_NUMBER=3
[2025-11-26 16:07:04] Set ATHENA_CORE_NUMBER=3
[2025-11-26 16:07:04] Starting ATLAS job with PandaID=6895351883
[2025-11-26 16:07:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 23:57:47]  *** The last 200 lines of the pilot log: ***
[2025-11-26 23:57:47] 2025-11-26 22:56:54,019 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 23:57:47] 2025-11-26 22:56:54,019 | INFO     | ready for new job
[2025-11-26 23:57:47] 2025-11-26 22:56:54,019 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 23:57:47] 2025-11-26 22:56:54,021 | INFO     | ***************************************
[2025-11-26 23:57:47] 2025-11-26 22:56:54,021 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 23:57:47] 2025-11-26 22:56:54,021 | INFO     | ***************************************
[2025-11-26 23:57:47] 2025-11-26 22:56:54,021 | INFO     | 
[2025-11-26 23:57:47] 2025-11-26 22:56:54,021 | INFO     | architecture information:
[2025-11-26 23:57:47] 2025-11-26 22:56:54,021 | INFO     | executing command: cat /etc/os-release
[2025-11-26 23:57:47] 2025-11-26 22:56:54,030 | INFO     | cat /etc/os-release:
[2025-11-26 23:57:47] NAME="CentOS Linux"
[2025-11-26 23:57:47] VERSION="7 (Core)"
[2025-11-26 23:57:47] ID="centos"
[2025-11-26 23:57:47] ID_LIKE="rhel fedora"
[2025-11-26 23:57:47] VERSION_ID="7"
[2025-11-26 23:57:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 23:57:47] ANSI_COLOR="0;31"
[2025-11-26 23:57:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 23:57:47] HOME_URL="https://www.centos.org/"
[2025-11-26 23:57:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 23:57:47] 
[2025-11-26 23:57:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 23:57:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 23:57:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 23:57:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 23:57:47] 
[2025-11-26 23:57:47] 2025-11-26 22:56:54,030 | INFO     | ***************************************
[2025-11-26 23:57:47] 2025-11-26 22:56:54,534 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-26 23:57:47] 2025-11-26 22:56:54,546 | INFO     | sufficient remaining disk space (367034105856 B)
[2025-11-26 23:57:47] 2025-11-26 22:56:54,546 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 23:57:47] 2025-11-26 22:56:54,546 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 23:57:47] 2025-11-26 22:56:54,546 | INFO     | update_server=False
[2025-11-26 23:57:47] 2025-11-26 22:56:54,546 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 23:57:47] 2025-11-26 22:56:54,547 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 23:57:47] 2025-11-26 22:56:54,547 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 23:57:47] 2025-11-26 22:56:54,547 | INFO     | aborting loop
[2025-11-26 23:57:47] 2025-11-26 22:56:54,647 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 23:57:47] 2025-11-26 22:56:55,538 | INFO     | all data control threads have been joined
[2025-11-26 23:57:47] 2025-11-26 22:56:55,552 | INFO     | [job] retrieve thread has finished
[2025-11-26 23:57:47] 2025-11-26 22:56:55,553 | INFO     | [job] queue monitor thread has finished
[2025-11-26 23:57:47] 2025-11-26 22:56:55,553 | INFO     | [job] job monitor thread has finished
[2025-11-26 23:57:47] 2025-11-26 22:56:55,672 | INFO     | [payload] failed_post thread has finished
[2025-11-26 23:57:47] 2025-11-26 22:56:55,699 | INFO     | all payload control threads have been joined
[2025-11-26 23:57:47] 2025-11-26 22:56:55,855 | INFO     | all job control threads have been joined
[2025-11-26 23:57:47] 2025-11-26 22:56:55,919 | INFO     | [data] copytool_in thread has finished
[2025-11-26 23:57:47] 2025-11-26 22:56:56,049 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 23:57:47] 2025-11-26 22:56:56,050 | INFO     | [job] validate thread has finished
[2025-11-26 23:57:47] 2025-11-26 22:56:56,066 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 23:57:47] 2025-11-26 22:56:56,245 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 23:57:47] 2025-11-26 22:56:56,451 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 23:57:47] 2025-11-26 22:56:56,544 | INFO     | [data] control thread has finished
[2025-11-26 23:57:47] 2025-11-26 22:56:56,653 | INFO     | [data] copytool_out thread has finished
[2025-11-26 23:57:47] 2025-11-26 22:56:56,705 | INFO     | [payload] control thread has finished
[2025-11-26 23:57:47] 2025-11-26 22:56:56,856 | INFO     | [job] control thread has finished
[2025-11-26 23:57:47] 2025-11-26 22:56:56,906 | INFO     | [payload] validate_post thread has finished
[2025-11-26 23:57:47] 2025-11-26 22:56:57,898 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 23:57:47] 2025-11-26 22:57:01,905 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 23:57:47] 2025-11-26 22:57:25,030 | INFO     | PID=1567223 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 23:57:47] 2025-11-26 22:57:25,030 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 23:57:47] 2025-11-26 22:57:25,030 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 23:57:47] 2025-11-26 22:57:25,030 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 23:57:47] 2025-11-26 22:57:41,527 | INFO     | [monitor] cgroup control has ended
[2025-11-26 23:57:47] 2025-11-26 22:57:42,198 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140414579087168)>', '<ExcThread(monitor, started 140413788731136)>']
[2025-11-26 23:57:47] 2025-11-26 22:57:43,120 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 23:57:47] 2025-11-26 22:57:43,121 | INFO     | [monitor] control thread has ended
[2025-11-26 23:57:47] 2025-11-26 22:57:47,223 | INFO     | all workflow threads have been joined
[2025-11-26 23:57:47] 2025-11-26 22:57:47,224 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 23:57:47] 2025-11-26 22:57:47,224 | INFO     | traces error code: 0
[2025-11-26 23:57:47] 2025-11-26 22:57:47,224 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 23:57:47] 2025-11-26 22:57:47,274 [wrapper] ==== pilot stdout END ====
[2025-11-26 23:57:47] 2025-11-26 22:57:47,276 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 23:57:47] 2025-11-26 22:57:47,279 [wrapper] pilotpid: 1567223
[2025-11-26 23:57:47] 2025-11-26 22:57:47,281 [wrapper] Pilot exit status: 0
[2025-11-26 23:57:47] 2025-11-26 22:57:47,289 [wrapper] pandaids: 6895351883
[2025-11-26 23:57:47] 2025-11-26 22:57:47,307 [wrapper] cleanup supervisor_pilot 1623599 1567224
[2025-11-26 23:57:47] 2025-11-26 22:57:47,310 [wrapper] Test setup, not cleaning
[2025-11-26 23:57:47] 2025-11-26 22:57:47,312 [wrapper] apfmon messages muted
[2025-11-26 23:57:47] 2025-11-26 22:57:47,315 [wrapper] ==== wrapper stdout END ====
[2025-11-26 23:57:47] 2025-11-26 22:57:47,317 [wrapper] ==== wrapper stderr END ====
[2025-11-26 23:57:47]  *** Error codes and diagnostics ***
[2025-11-26 23:57:47]     "exeErrorCode": 0,
[2025-11-26 23:57:47]     "exeErrorDiag": "",
[2025-11-26 23:57:47]     "pilotErrorCode": 0,
[2025-11-26 23:57:47]     "pilotErrorDiag": "",
[2025-11-26 23:57:47]  *** Listing of results directory ***
[2025-11-26 23:57:47] total 1314204
[2025-11-26 23:57:47] -rw-r--r-- 1 boinc boinc    576529 Nov 23 02:20 pilot3.tar.gz
[2025-11-26 23:57:47] -rwx------ 1 boinc boinc     36292 Nov 23 02:32 runpilot2-wrapper.sh
[2025-11-26 23:57:47] -rw-r--r-- 1 boinc boinc      5112 Nov 23 02:32 queuedata.json
[2025-11-26 23:57:47] -rw-r--r-- 1 boinc boinc       100 Nov 26 16:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 23:57:47] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 16:07 run_atlas
[2025-11-26 23:57:47] -rw-r--r-- 1 boinc boinc       105 Nov 26 16:07 job.xml
[2025-11-26 23:57:47] -rw-r--r-- 2 boinc boinc 409056638 Nov 26 16:07 EVNT.47483658._001129.pool.root.1
[2025-11-26 23:57:47] -rw-r--r-- 2 boinc boinc    590097 Nov 26 16:07 input.tar.gz
[2025-11-26 23:57:47] -rw-r--r-- 2 boinc boinc     15847 Nov 26 16:07 start_atlas.sh
[2025-11-26 23:57:47] drwxrwx--x 2 boinc boinc      4096 Nov 26 16:07 shared
[2025-11-26 23:57:47] -rw-r--r-- 1 boinc boinc         0 Nov 26 16:07 boinc_setup_complete
[2025-11-26 23:57:47] -rw-r--r-- 1 boinc boinc      6449 Nov 26 16:07 init_data.xml
[2025-11-26 23:57:47] -rw-r--r-- 1 boinc boinc         0 Nov 26 16:07 boinc_lockfile
[2025-11-26 23:57:47] -rw-r--r-- 1 boinc boinc      2785 Nov 26 16:07 pandaJob.out
[2025-11-26 23:57:47] -rw------- 1 boinc boinc    992360 Nov 26 16:07 agis_schedconf.cvmfs.json
[2025-11-26 23:57:47] drwx------ 5 boinc boinc      4096 Nov 26 16:07 pilot3
[2025-11-26 23:57:47] -rw-r--r-- 1 boinc boinc       532 Nov 26 23:53 boinc_task_state.xml
[2025-11-26 23:57:47] -rw------- 1 boinc boinc 922512072 Nov 26 23:56 HITS.47556149._001160.pool.root.1
[2025-11-26 23:57:47] -rw------- 1 boinc boinc        95 Nov 26 23:56 pilot_heartbeat.json
[2025-11-26 23:57:47] -rw------- 1 boinc boinc      1025 Nov 26 23:56 memory_monitor_summary.json
[2025-11-26 23:57:47] -rw------- 1 boinc boinc   1516240 Nov 26 23:56 agis_ddmendpoints.agis.ALL.json
[2025-11-26 23:57:47] -rw------- 1 boinc boinc   1169337 Nov 26 23:56 log.47556149._001160.job.log.tgz.1
[2025-11-26 23:57:47] -rw------- 1 boinc boinc      8558 Nov 26 23:56 heartbeat.json
[2025-11-26 23:57:47] -rw-r--r-- 1 boinc boinc      8192 Nov 26 23:57 boinc_mmap_file
[2025-11-26 23:57:47] -rw-r--r-- 1 boinc boinc        28 Nov 26 23:57 wrapper_checkpoint.txt
[2025-11-26 23:57:47] -rw------- 1 boinc boinc      4752 Nov 26 23:57 pilotlog.txt
[2025-11-26 23:57:47] -rw------- 1 boinc boinc   3965834 Nov 26 23:57 log.47556149._001160.job.log.1
[2025-11-26 23:57:47] -rw------- 1 boinc boinc       353 Nov 26 23:57 output.list
[2025-11-26 23:57:47] -rw-r--r-- 1 boinc boinc       620 Nov 26 23:57 runtime_log
[2025-11-26 23:57:47] -rw------- 1 boinc boinc   5150720 Nov 26 23:57 result.tar.gz
[2025-11-26 23:57:47] -rw-r--r-- 1 boinc boinc      8913 Nov 26 23:57 runtime_log.err
[2025-11-26 23:57:47] -rw------- 1 boinc boinc       668 Nov 26 23:57 qWmMDmf8Dh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmvWKKDmuf3THn.diag
[2025-11-26 23:57:47] -rw-r--r-- 1 boinc boinc      9751 Nov 26 23:57 stderr.txt
[2025-11-26 23:57:47] HITS file was successfully produced:
[2025-11-26 23:57:47] -rw------- 1 boinc boinc 922512072 Nov 26 23:56 shared/HITS.pool.root.1
[2025-11-26 23:57:47]  *** Contents of shared directory: ***
[2025-11-26 23:57:47] total 1306000
[2025-11-26 23:57:47] -rw-r--r-- 2 boinc boinc 409056638 Nov 26 16:07 ATLAS.root_0
[2025-11-26 23:57:47] -rw-r--r-- 2 boinc boinc    590097 Nov 26 16:07 input.tar.gz
[2025-11-26 23:57:47] -rw-r--r-- 2 boinc boinc     15847 Nov 26 16:07 start_atlas.sh
[2025-11-26 23:57:47] -rw------- 1 boinc boinc 922512072 Nov 26 23:56 HITS.pool.root.1
[2025-11-26 23:57:47] -rw------- 1 boinc boinc   5150720 Nov 26 23:57 result.tar.gz
23:57:48 (1563499): run_atlas exited; CPU time 83142.590901
23:57:48 (1563499): called boinc_finish(0)

</stderr_txt>
]]>

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