Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:15:12 (1953444): wrapper (7.7.26015): starting
00:15:12 (1953444): wrapper: running run_atlas (--nthreads 9)
[2025-11-24 00:15:12] Arguments: --nthreads 9
[2025-11-24 00:15:12] Threads: 9
[2025-11-24 00:15:12] Checking for CVMFS
[2025-11-24 00:15:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:15:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:15:13] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:15:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:15:14] 2.13.3.0 6673 4265 240192 153235 2 90 23207264 32935937 55772 16776704 0 37135198 99.710 26647646 28596 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 00:15:14] CVMFS is ok
[2025-11-24 00:15:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 00:15:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 00:15:14] Further information can be found at the LHC@home message board.
[2025-11-24 00:15:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:15:14] Checking for apptainer binary...
[2025-11-24 00:15:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:15:14] Running /usr/bin/apptainer --version
[2025-11-24 00:15:14] apptainer version 1.4.4-1.el9
[2025-11-24 00:15:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:15:15] lc-10-9.aglt2.org
[2025-11-24 00:15:15] apptainer works
[2025-11-24 00:15:15] Set ATHENA_PROC_NUMBER=9
[2025-11-24 00:15:15] Set ATHENA_CORE_NUMBER=9
[2025-11-24 00:15:15] Starting ATLAS job with PandaID=6895342758
[2025-11-24 00:15:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
00:20:17 (1953444): BOINC client no longer exists - exiting
00:20:17 (1953444): timer handler: client dead, exiting
00:28:05 (2034545): wrapper (7.7.26015): starting
00:28:05 (2034545): wrapper: running run_atlas (--nthreads 9)
[2025-11-24 00:28:05] Arguments: --nthreads 9
[2025-11-24 00:28:05] Threads: 9
[2025-11-24 00:28:05] This job has been restarted, cleaning up previous attempt
[2025-11-24 00:28:05] Checking for CVMFS
[2025-11-24 00:28:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:28:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:28:05] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:28:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:28:05] 2.13.3.0 6673 4278 248308 153235 1 357 23236873 32935936 47076 16776704 0 37349136 99.712 26649378 28594 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 00:28:05] CVMFS is ok
[2025-11-24 00:28:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 00:28:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 00:28:05] Further information can be found at the LHC@home message board.
[2025-11-24 00:28:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:28:05] Checking for apptainer binary...
[2025-11-24 00:28:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:28:05] Running /usr/bin/apptainer --version
[2025-11-24 00:28:05] apptainer version 1.4.4-1.el9
[2025-11-24 00:28:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:28:05] lc-10-9.aglt2.org
[2025-11-24 00:28:05] apptainer works
[2025-11-24 00:28:05] Set ATHENA_PROC_NUMBER=9
[2025-11-24 00:28:05] Set ATHENA_CORE_NUMBER=9
[2025-11-24 00:28:06] Starting ATLAS job with PandaID=6895342758
[2025-11-24 00:28:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 04:28:53]  *** The last 200 lines of the pilot log: ***
[2025-11-25 04:28:53] 2025-11-25 09:28:04,219 | INFO     | mean x: 1764012487.2336562
[2025-11-25 04:28:53] 2025-11-25 09:28:04,219 | INFO     | mean y: 3091944.621670702
[2025-11-25 04:28:53] 2025-11-25 09:28:04,219 | INFO     | intersect: -10036915117.22343
[2025-11-25 04:28:53] 2025-11-25 09:28:04,221 | INFO     | chi2: 6.789859903497872
[2025-11-25 04:28:53] 2025-11-25 09:28:04,227 | INFO     | sum of square deviations: 1385302523763.7358
[2025-11-25 04:28:53] 2025-11-25 09:28:04,290 | INFO     | sum of deviations: 8578429932952.433
[2025-11-25 04:28:53] 2025-11-25 09:28:04,290 | INFO     | mean x: 1764012334.7389193
[2025-11-25 04:28:53] 2025-11-25 09:28:04,290 | INFO     | mean y: 3099437.6405585916
[2025-11-25 04:28:53] 2025-11-25 09:28:04,291 | INFO     | intersect: -10920475705.57668
[2025-11-25 04:28:53] 2025-11-25 09:28:04,293 | INFO     | chi2: 3.38227719947342
[2025-11-25 04:28:53] 2025-11-25 09:28:04,293 | INFO     | current chi2=3.38227719947342 (change=50.18634776645388 %)
[2025-11-25 04:28:53] 2025-11-25 09:28:04,295 | INFO     | sum of square deviations: 1372724540270.5603
[2025-11-25 04:28:53] 2025-11-25 09:28:04,358 | INFO     | sum of deviations: 8849571115892.045
[2025-11-25 04:28:53] 2025-11-25 09:28:04,359 | INFO     | mean x: 1764012182.2436054
[2025-11-25 04:28:53] 2025-11-25 09:28:04,359 | INFO     | mean y: 3102723.0998781975
[2025-11-25 04:28:53] 2025-11-25 09:28:04,359 | INFO     | intersect: -11368990364.846132
[2025-11-25 04:28:53] 2025-11-25 09:28:04,361 | INFO     | chi2: 2.4710212780289624
[2025-11-25 04:28:53] 2025-11-25 09:28:04,361 | INFO     | current chi2=2.4710212780289624 (change=26.942082736043314 %)
[2025-11-25 04:28:53] 2025-11-25 09:28:04,363 | INFO     | sum of square deviations: 1360222429866.7764
[2025-11-25 04:28:53] 2025-11-25 09:28:04,425 | INFO     | sum of deviations: 8819908496078.127
[2025-11-25 04:28:53] 2025-11-25 09:28:04,425 | INFO     | mean x: 1764012029.7452657
[2025-11-25 04:28:53] 2025-11-25 09:28:04,425 | INFO     | mean y: 3102360.56627978
[2025-11-25 04:28:53] 2025-11-25 09:28:04,426 | INFO     | intersect: -11435045067.90843
[2025-11-25 04:28:53] 2025-11-25 09:28:04,427 | INFO     | chi2: 2.4430549382510005
[2025-11-25 04:28:53] 2025-11-25 09:28:04,428 | INFO     | current chi2=2.4430549382510005 (change=1.1317725195903447 %)
[2025-11-25 04:28:53] 2025-11-25 09:28:04,428 | INFO     | right removable region: 1636
[2025-11-25 04:28:53] 2025-11-25 09:28:04,430 | INFO     | sum of square deviations: 1385301178961.6357
[2025-11-25 04:28:53] 2025-11-25 09:28:04,479 | INFO     | sum of deviations: 7501331886495.264
[2025-11-25 04:28:53] 2025-11-25 09:28:04,479 | INFO     | mean x: 1764012639.7364905
[2025-11-25 04:28:53] 2025-11-25 09:28:04,479 | INFO     | mean y: 3097425.6411657557
[2025-11-25 04:28:53] 2025-11-25 09:28:04,479 | INFO     | intersect: -9548936791.60718
[2025-11-25 04:28:53] 2025-11-25 09:28:04,481 | INFO     | chi2: 4.814280304671268
[2025-11-25 04:28:53] 2025-11-25 09:28:04,481 | INFO     | current chi2=4.814280304671268 (change=29.0960288857928 %)
[2025-11-25 04:28:53] 2025-11-25 09:28:04,483 | INFO     | sum of square deviations: 1372722152683.8948
[2025-11-25 04:28:53] 2025-11-25 09:28:04,528 | INFO     | sum of deviations: 7323860960305.797
[2025-11-25 04:28:53] 2025-11-25 09:28:04,529 | INFO     | mean x: 1764012792.2381241
[2025-11-25 04:28:53] 2025-11-25 09:28:04,529 | INFO     | mean y: 3099577.0925700366
[2025-11-25 04:28:53] 2025-11-25 09:28:04,529 | INFO     | intersect: -9408407622.156254
[2025-11-25 04:28:53] 2025-11-25 09:28:04,531 | INFO     | chi2: 4.703751369713406
[2025-11-25 04:28:53] 2025-11-25 09:28:04,531 | INFO     | current chi2=4.703751369713406 (change=2.2958558281414603 %)
[2025-11-25 04:28:53] 2025-11-25 09:28:04,531 | INFO     | left removable region: 20
[2025-11-25 04:28:53] 2025-11-25 09:28:04,533 | INFO     | sum of square deviations: 1308541636743.2754
[2025-11-25 04:28:53] 2025-11-25 09:28:04,581 | INFO     | sum of deviations: 7883451479204.586
[2025-11-25 04:28:53] 2025-11-25 09:28:04,581 | INFO     | mean x: 1764012609.2382426
[2025-11-25 04:28:53] 2025-11-25 09:28:04,581 | INFO     | mean y: 3113647.663366337
[2025-11-25 04:28:53] 2025-11-25 09:28:04,581 | INFO     | intersect: -10624372267.301908
[2025-11-25 04:28:53] 2025-11-25 09:28:04,583 | INFO     | chi2: 0.2367235086502392
[2025-11-25 04:28:53] 2025-11-25 09:28:04,583 | INFO     | current memory leak: 6.02 B/s (using 1616 data points, chi2=0.24)
[2025-11-25 04:28:53] 2025-11-25 09:28:04,585 | INFO     | could have reported an average CPU frequency of 2682 MHz (58 samples)
[2025-11-25 04:28:53] 2025-11-25 09:28:04,585 | INFO     | ..............................
[2025-11-25 04:28:53] 2025-11-25 09:28:04,585 | INFO     | . Timing measurements:
[2025-11-25 04:28:53] 2025-11-25 09:28:04,585 | INFO     | . get job = 0 s
[2025-11-25 04:28:53] 2025-11-25 09:28:04,585 | INFO     | . initial setup = 1 s
[2025-11-25 04:28:53] 2025-11-25 09:28:04,586 | INFO     | . payload setup = 7 s
[2025-11-25 04:28:53] 2025-11-25 09:28:04,586 | INFO     | . stage-in = 0 s
[2025-11-25 04:28:53] 2025-11-25 09:28:04,586 | INFO     | . payload execution = 100739 s
[2025-11-25 04:28:53] 2025-11-25 09:28:04,586 | INFO     | . stage-out = 4 s
[2025-11-25 04:28:53] 2025-11-25 09:28:04,586 | INFO     | . log creation = 1 s
[2025-11-25 04:28:53] 2025-11-25 09:28:04,586 | INFO     | ..............................
[2025-11-25 04:28:53] 2025-11-25 09:28:04,674 | INFO     | 
[2025-11-25 04:28:53] 2025-11-25 09:28:04,674 | INFO     | job summary report
[2025-11-25 04:28:53] 2025-11-25 09:28:04,674 | INFO     | --------------------------------------------------
[2025-11-25 04:28:53] 2025-11-25 09:28:04,674 | INFO     | PanDA job id: 6895342758
[2025-11-25 04:28:53] 2025-11-25 09:28:04,674 | INFO     | task id: 47556137
[2025-11-25 04:28:53] 2025-11-25 09:28:04,674 | INFO     | errors: (none)
[2025-11-25 04:28:53] 2025-11-25 09:28:04,674 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 04:28:53] 2025-11-25 09:28:04,674 | INFO     | pilot state: finished 
[2025-11-25 04:28:53] 2025-11-25 09:28:04,674 | INFO     | transexitcode: 0
[2025-11-25 04:28:53] 2025-11-25 09:28:04,675 | INFO     | exeerrorcode: 0
[2025-11-25 04:28:53] 2025-11-25 09:28:04,675 | INFO     | exeerrordiag: 
[2025-11-25 04:28:53] 2025-11-25 09:28:04,675 | INFO     | exitcode: 0
[2025-11-25 04:28:53] 2025-11-25 09:28:04,675 | INFO     | exitmsg: OK
[2025-11-25 04:28:53] 2025-11-25 09:28:04,675 | INFO     | cpuconsumptiontime: 262829 s
[2025-11-25 04:28:53] 2025-11-25 09:28:04,675 | INFO     | nevents: 1000
[2025-11-25 04:28:53] 2025-11-25 09:28:04,675 | INFO     | neventsw: 0
[2025-11-25 04:28:53] 2025-11-25 09:28:04,675 | INFO     | pid: 2134171
[2025-11-25 04:28:53] 2025-11-25 09:28:04,675 | INFO     | pgrp: 2134171
[2025-11-25 04:28:53] 2025-11-25 09:28:04,675 | INFO     | corecount: 9
[2025-11-25 04:28:53] 2025-11-25 09:28:04,675 | INFO     | event service: False
[2025-11-25 04:28:53] 2025-11-25 09:28:04,675 | INFO     | sizes: {0: 2298528, 1: 2298783, 6: 2299045, 12: 2299073, 100749: 2369186, 100754: 2378976, 100756: 2379160, 100770: 2379406}
[2025-11-25 04:28:53] 2025-11-25 09:28:04,675 | INFO     | --------------------------------------------------
[2025-11-25 04:28:53] 2025-11-25 09:28:04,675 | INFO     | 
[2025-11-25 04:28:53] 2025-11-25 09:28:04,676 | INFO     | executing command: ls -lF /tmp/boinchome/slots/8
[2025-11-25 04:28:53] 2025-11-25 09:28:04,711 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 04:28:53] 2025-11-25 09:28:04,711 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 04:28:53] 2025-11-25 09:28:04,711 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 04:28:53] 2025-11-25 09:28:04,711 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 04:28:53] 2025-11-25 09:28:04,711 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 04:28:53] 2025-11-25 09:28:04,711 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 04:28:53] 2025-11-25 09:28:04,711 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 04:28:53] 2025-11-25 09:28:04,711 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 04:28:53] 2025-11-25 09:28:04,711 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 04:28:53] 2025-11-25 09:28:04,712 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 04:28:53] 2025-11-25 09:28:04,712 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 04:28:53] 2025-11-25 09:28:04,712 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 04:28:53] 2025-11-25 09:28:04,712 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 04:28:53] 2025-11-25 09:28:04,712 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 04:28:53] 2025-11-25 09:28:04,712 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 04:28:53] 2025-11-25 09:28:04,712 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 04:28:53] 2025-11-25 09:28:04,712 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 04:28:53] 2025-11-25 09:28:04,712 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 04:28:53] 2025-11-25 09:28:04,712 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 04:28:53] 2025-11-25 09:28:04,712 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 04:28:53] 2025-11-25 09:28:04,712 | INFO     | job 6895342758 has completed (purged errors)
[2025-11-25 04:28:53] 2025-11-25 09:28:04,712 | INFO     | overall cleanup function is called
[2025-11-25 04:28:53] 2025-11-25 09:28:05,731 | INFO     | --- collectZombieJob: --- 10, [2134171]
[2025-11-25 04:28:53] 2025-11-25 09:28:05,731 | INFO     | zombie collector waiting for pid 2134171
[2025-11-25 04:28:53] 2025-11-25 09:28:05,731 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 04:28:53] 2025-11-25 09:28:05,732 | INFO     | collected zombie processes
[2025-11-25 04:28:53] 2025-11-25 09:28:05,732 | INFO     | will attempt to kill all subprocesses of pid=2134171
[2025-11-25 04:28:53] 2025-11-25 09:28:06,423 | INFO     | process IDs to be killed: [2134171] (in reverse order)
[2025-11-25 04:28:53] 2025-11-25 09:28:06,678 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 04:28:53] 2025-11-25 09:28:06,679 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 04:28:53] 2025-11-25 09:28:06,708 | INFO     | did not find any defunct processes belonging to 2134171
[2025-11-25 04:28:53] 2025-11-25 09:28:06,736 | INFO     | did not find any defunct processes belonging to 2134171
[2025-11-25 04:28:53] 2025-11-25 09:28:06,737 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 04:28:53] 2025-11-25 09:28:06,737 | INFO     | ready for new job
[2025-11-25 04:28:53] 2025-11-25 09:28:06,737 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 04:28:53] 2025-11-25 09:28:06,743 | INFO     | ***************************************
[2025-11-25 04:28:53] 2025-11-25 09:28:06,744 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 04:28:53] 2025-11-25 09:28:06,744 | INFO     | ***************************************
[2025-11-25 04:28:53] 2025-11-25 09:28:06,744 | INFO     | 
[2025-11-25 04:28:53] 2025-11-25 09:28:06,749 | INFO     | architecture information:
[2025-11-25 04:28:53] 2025-11-25 09:28:06,749 | INFO     | executing command: cat /etc/os-release
[2025-11-25 04:28:53] 2025-11-25 09:28:06,765 | INFO     | cat /etc/os-release:
[2025-11-25 04:28:53] NAME="CentOS Linux"
[2025-11-25 04:28:53] VERSION="7 (Core)"
[2025-11-25 04:28:53] ID="centos"
[2025-11-25 04:28:53] ID_LIKE="rhel fedora"
[2025-11-25 04:28:53] VERSION_ID="7"
[2025-11-25 04:28:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 04:28:53] ANSI_COLOR="0;31"
[2025-11-25 04:28:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 04:28:53] HOME_URL="https://www.centos.org/"
[2025-11-25 04:28:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 04:28:53] 
[2025-11-25 04:28:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 04:28:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 04:28:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 04:28:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 04:28:53] 
[2025-11-25 04:28:53] 2025-11-25 09:28:06,766 | INFO     | ***************************************
[2025-11-25 04:28:53] 2025-11-25 09:28:07,268 | INFO     | executing command: df -mP /tmp/boinchome/slots/8
[2025-11-25 04:28:53] 2025-11-25 09:28:07,343 | INFO     | sufficient remaining disk space (80062971904 B)
[2025-11-25 04:28:53] 2025-11-25 09:28:07,343 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 04:28:53] 2025-11-25 09:28:07,343 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 04:28:53] 2025-11-25 09:28:07,343 | INFO     | update_server=False
[2025-11-25 04:28:53] 2025-11-25 09:28:07,343 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 04:28:53] 2025-11-25 09:28:07,351 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 04:28:53] 2025-11-25 09:28:07,401 | INFO     | all payload control threads have been joined
[2025-11-25 04:28:53] 2025-11-25 09:28:07,488 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 04:28:53] 2025-11-25 09:28:07,489 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 04:28:53] 2025-11-25 09:28:07,489 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 04:28:53] 2025-11-25 09:28:07,489 | INFO     | will abort loop
[2025-11-25 04:28:53] 2025-11-25 09:28:07,839 | INFO     | all job control threads have been joined
[2025-11-25 04:28:53] 2025-11-25 09:28:08,160 | INFO     | all data control threads have been joined
[2025-11-25 04:28:53] 2025-11-25 09:28:08,350 | INFO     | [job] retrieve thread has finished
[2025-11-25 04:28:53] 2025-11-25 09:28:08,411 | INFO     | [payload] control thread has finished
[2025-11-25 04:28:53] 2025-11-25 09:28:08,495 | INFO     | [job] job monitor thread has finished
[2025-11-25 04:28:53] 2025-11-25 09:28:08,548 | INFO     | [job] validate thread has finished
[2025-11-25 04:28:53] 2025-11-25 09:28:08,845 | INFO     | [job] control thread has finished
[2025-11-25 04:28:53] 2025-11-25 09:28:09,166 | INFO     | [data] control thread has finished
[2025-11-25 04:28:53] 2025-11-25 09:28:09,257 | INFO     | [data] copytool_in thread has finished
[2025-11-25 04:28:53] 2025-11-25 09:28:09,278 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 04:28:53] 2025-11-25 09:28:09,360 | INFO     | [data] copytool_out thread has finished
[2025-11-25 04:28:53] 2025-11-25 09:28:09,431 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 04:28:53] 2025-11-25 09:28:09,535 | INFO     | [payload] validate_post thread has finished
[2025-11-25 04:28:53] 2025-11-25 09:28:09,681 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 04:28:53] 2025-11-25 09:28:09,693 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 04:28:53] 2025-11-25 09:28:09,816 | INFO     | [payload] failed_post thread has finished
[2025-11-25 04:28:53] 2025-11-25 09:28:10,699 | INFO     | [job] queue monitor thread has finished
[2025-11-25 04:28:53] 2025-11-25 09:28:10,790 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 04:28:53] 2025-11-25 09:28:14,798 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 04:28:53] 2025-11-25 09:28:17,782 | INFO     | job.realtimelogging is not enabled
[2025-11-25 04:28:53] 2025-11-25 09:28:18,788 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 04:28:53] 2025-11-25 09:28:29,172 [wrapper] supervise_pilot (15 min periods counter: 113)
[2025-11-25 04:28:53] 2025-11-25 09:28:32,353 | INFO     | [monitor] cgroup control has ended
[2025-11-25 04:28:53] 2025-11-25 09:28:32,702 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139666405381952)>', '<ExcThread(monitor, started 139666044983040)>']
[2025-11-25 04:28:53] 2025-11-25 09:28:37,763 | INFO     | all workflow threads have been joined
[2025-11-25 04:28:53] 2025-11-25 09:28:37,763 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 04:28:53] 2025-11-25 09:28:37,764 | INFO     | traces error code: 0
[2025-11-25 04:28:53] 2025-11-25 09:28:37,764 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 04:28:53] 2025-11-25 09:28:38,343 | INFO     | PID=2071835 has CPU usage=5.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 04:28:53] 2025-11-25 09:28:38,344 | INFO     | .. there are 86 such processes running
[2025-11-25 04:28:53] 2025-11-25 09:28:38,344 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 04:28:53] 2025-11-25 09:28:38,344 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 04:28:53] 2025-11-25 09:28:38,344 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 04:28:53] 2025-11-25 09:28:38,344 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 04:28:53] 2025-11-25 09:28:38,344 | CRITICAL | thread 'MainThread' is not alive
[2025-11-25 04:28:53] 2025-11-25 09:28:38,344 | INFO     | [monitor] control thread has ended
[2025-11-25 04:28:53] 2025-11-25 09:28:38,575 [wrapper] ==== pilot stdout END ====
[2025-11-25 04:28:53] 2025-11-25 09:28:38,579 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 04:28:53] 2025-11-25 09:28:38,583 [wrapper] pilotpid: 2071835
[2025-11-25 04:28:53] 2025-11-25 09:28:38,587 [wrapper] Pilot exit status: 0
[2025-11-25 04:28:53] 2025-11-25 09:28:38,615 [wrapper] pandaids: 6895342758 6895342758
[2025-11-25 04:28:53] 2025-11-25 09:28:38,760 [wrapper] cleanup supervisor_pilot 2508464 2071836
[2025-11-25 04:28:53] 2025-11-25 09:28:38,768 [wrapper] Test setup, not cleaning
[2025-11-25 04:28:53] 2025-11-25 09:28:38,772 [wrapper] apfmon messages muted
[2025-11-25 04:28:53] 2025-11-25 09:28:38,775 [wrapper] ==== wrapper stdout END ====
[2025-11-25 04:28:53] 2025-11-25 09:28:38,778 [wrapper] ==== wrapper stderr END ====
[2025-11-25 04:28:53]  *** Error codes and diagnostics ***
[2025-11-25 04:28:53]     "exeErrorCode": 0,
[2025-11-25 04:28:53]     "exeErrorDiag": "",
[2025-11-25 04:28:53]     "pilotErrorCode": 0,
[2025-11-25 04:28:53]     "pilotErrorDiag": "",
[2025-11-25 04:28:53]  *** Listing of results directory ***
[2025-11-25 04:28:53] total 1733968
[2025-11-25 04:28:53] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-25 04:28:53] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 10:04 pilot3.tar.gz
[2025-11-25 04:28:53] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 10:30 queuedata.json
[2025-11-25 04:28:53] -rwx------. 1 boincer umatlas     36292 Nov 22 10:30 runpilot2-wrapper.sh
[2025-11-25 04:28:53] -rw-r--r--. 1 boincer umatlas       100 Nov 24 00:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 04:28:53] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 00:15 run_atlas
[2025-11-25 04:28:53] -rw-r--r--. 1 boincer umatlas       105 Nov 24 00:15 job.xml
[2025-11-25 04:28:53] -rw-r--r--. 3 boincer umatlas 410356174 Nov 24 00:15 EVNT.47483658._000410.pool.root.1
[2025-11-25 04:28:53] -rw-r--r--. 3 boincer umatlas 410356174 Nov 24 00:15 ATLAS.root_0
[2025-11-25 04:28:53] -rw-r--r--. 2 boincer umatlas    590102 Nov 24 00:15 input.tar.gz
[2025-11-25 04:28:53] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:15 start_atlas.sh
[2025-11-25 04:28:53] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 00:15 shared
[2025-11-25 04:28:53] -rw-r--r--. 1 boincer umatlas         0 Nov 24 00:15 boinc_lockfile
[2025-11-25 04:28:53] -rw-r--r--. 1 boincer umatlas      2784 Nov 24 00:28 pandaJob.out
[2025-11-25 04:28:53] -rw-------. 1 boincer umatlas        57 Nov 24 00:28 setup.sh.local
[2025-11-25 04:28:53] -rw-------. 1 boincer umatlas    989786 Nov 24 00:28 agis_schedconf.cvmfs.json
[2025-11-25 04:28:53] -rw-r--r--. 1 boincer umatlas       533 Nov 25 04:15 boinc_task_state.xml
[2025-11-25 04:28:53] -rw-------. 1 boincer umatlas 923314224 Nov 25 04:26 HITS.47556137._004054.pool.root.1
[2025-11-25 04:28:53] -rw-r--r--. 1 boincer umatlas      6887 Nov 25 04:27 init_data.xml
[2025-11-25 04:28:53] -rw-------. 1 boincer umatlas      1059 Nov 25 04:27 memory_monitor_summary.json
[2025-11-25 04:28:53] -rw-------. 1 boincer umatlas   1516240 Nov 25 04:27 agis_ddmendpoints.agis.ALL.json
[2025-11-25 04:28:53] -rw-------. 1 boincer umatlas   2618608 Nov 25 04:27 log.47556137._004054.job.log.tgz.1
[2025-11-25 04:28:53] -rw-------. 1 boincer umatlas        96 Nov 25 04:27 pilot_heartbeat.json
[2025-11-25 04:28:53] -rw-------. 1 boincer umatlas      8617 Nov 25 04:28 heartbeat.json
[2025-11-25 04:28:53] -rw-------. 1 boincer umatlas       893 Nov 25 04:28 pilotlog.txt
[2025-11-25 04:28:53] -rw-------. 1 boincer umatlas  11200639 Nov 25 04:28 log.47556137._004054.job.log.1
[2025-11-25 04:28:53] -rw-------. 1 boincer umatlas       353 Nov 25 04:28 output.list
[2025-11-25 04:28:53] -rw-r--r--. 1 boincer umatlas       620 Nov 25 04:28 runtime_log
[2025-11-25 04:28:53] -rw-------. 1 boincer umatlas  13834240 Nov 25 04:28 result.tar.gz
[2025-11-25 04:28:53] -rw-r--r--. 1 boincer umatlas      9424 Nov 25 04:28 runtime_log.err
[2025-11-25 04:28:53] -rw-------. 1 boincer umatlas       787 Nov 25 04:28 IKKMDm0j4g8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmOEKKDmIIcZ5m.diag
[2025-11-25 04:28:53] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 04:28 boinc_mmap_file
[2025-11-25 04:28:53] -rw-r--r--. 1 boincer umatlas     23436 Nov 25 04:28 stderr.txt
[2025-11-25 04:28:53] -rw-r--r--. 1 boincer umatlas        29 Nov 25 04:28 wrapper_checkpoint.txt
[2025-11-25 04:28:53] HITS file was successfully produced:
[2025-11-25 04:28:53] -rw-------. 1 boincer umatlas 923314224 Nov 25 04:26 shared/HITS.pool.root.1
[2025-11-25 04:28:53]  *** Contents of shared directory: ***
[2025-11-25 04:28:53] total 1316532
[2025-11-25 04:28:53] -rw-r--r--. 3 boincer umatlas 410356174 Nov 24 00:15 ATLAS.root_0
[2025-11-25 04:28:53] -rw-r--r--. 2 boincer umatlas    590102 Nov 24 00:15 input.tar.gz
[2025-11-25 04:28:53] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:15 start_atlas.sh
[2025-11-25 04:28:53] -rw-------. 1 boincer umatlas 923314224 Nov 25 04:26 HITS.pool.root.1
[2025-11-25 04:28:53] -rw-------. 1 boincer umatlas  13834240 Nov 25 04:28 result.tar.gz
04:28:55 (2034545): run_atlas exited; CPU time 267309.671986
04:28:55 (2034545): called boinc_finish(0)

</stderr_txt>
]]>

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