Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
22:36:35 (3971091): wrapper (7.7.26015): starting
22:36:35 (3971091): wrapper: running run_atlas (--nthreads 3)
[2025-11-23 22:36:35] Arguments: --nthreads 3
[2025-11-23 22:36:35] Threads: 3
[2025-11-23 22:36:35] Checking for CVMFS
[2025-11-23 22:36:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 22:36:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 22:36:35] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 22:36:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 22:36:36] 2.9.2.0 3845697 26 56260 153221 1 88 34905031 36864001 0 130560 0 375640 100.000 1296 13360 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-23 22:36:36] CVMFS is ok
[2025-11-23 22:36:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 22:36:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 22:36:36] Further information can be found at the LHC@home message board.
[2025-11-23 22:36:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 22:36:36] Checking for apptainer binary...
[2025-11-23 22:36:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 22:36:36] Running /usr/bin/apptainer --version
[2025-11-23 22:36:36] apptainer version 1.4.1-1.1
[2025-11-23 22:36:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 22:36:36] thA335
[2025-11-23 22:36:36] apptainer works
[2025-11-23 22:36:36] Set ATHENA_PROC_NUMBER=3
[2025-11-23 22:36:36] Set ATHENA_CORE_NUMBER=3
[2025-11-23 22:36:36] Starting ATLAS job with PandaID=6895351381
[2025-11-23 22:36:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 22:40:54]  *** The last 200 lines of the pilot log: ***
[2025-11-23 22:40:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 22:40:54] 
[2025-11-23 22:40:54] 2025-11-23 21:40:01,649 | INFO     | ***************************************
[2025-11-23 22:40:54] 2025-11-23 21:40:02,152 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-23 22:40:54] 2025-11-23 21:40:02,167 | INFO     | sufficient remaining disk space (827137720320 B)
[2025-11-23 22:40:54] 2025-11-23 21:40:02,167 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 22:40:54] 2025-11-23 21:40:02,167 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 22:40:54] 2025-11-23 21:40:02,167 | INFO     | update_server=False
[2025-11-23 22:40:54] 2025-11-23 21:40:02,167 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 22:40:54] 2025-11-23 21:40:02,167 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 22:40:54] 2025-11-23 21:40:02,168 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 22:40:54] 2025-11-23 21:40:02,168 | INFO     | aborting loop
[2025-11-23 22:40:54] 2025-11-23 21:40:02,408 | INFO     | all job control threads have been joined
[2025-11-23 22:40:54] 2025-11-23 21:40:03,159 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 22:40:54] 2025-11-23 21:40:03,171 | INFO     | [job] job monitor thread has finished
[2025-11-23 22:40:54] 2025-11-23 21:40:03,173 | INFO     | [job] retrieve thread has finished
[2025-11-23 22:40:54] 2025-11-23 21:40:03,173 | INFO     | [job] queue monitor thread has finished
[2025-11-23 22:40:54] 2025-11-23 21:40:03,195 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 22:40:54] 2025-11-23 21:40:03,259 | INFO     | all data control threads have been joined
[2025-11-23 22:40:54] 2025-11-23 21:40:03,296 | INFO     | [data] copytool_in thread has finished
[2025-11-23 22:40:54] 2025-11-23 21:40:03,414 | INFO     | [job] control thread has finished
[2025-11-23 22:40:54] 2025-11-23 21:40:03,444 | INFO     | [payload] failed_post thread has finished
[2025-11-23 22:40:54] 2025-11-23 21:40:03,566 | INFO     | all payload control threads have been joined
[2025-11-23 22:40:54] 2025-11-23 21:40:04,199 | INFO     | [payload] validate_post thread has finished
[2025-11-23 22:40:54] 2025-11-23 21:40:04,265 | INFO     | [data] control thread has finished
[2025-11-23 22:40:54] 2025-11-23 21:40:04,459 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 22:40:54] 2025-11-23 21:40:04,572 | INFO     | [payload] control thread has finished
[2025-11-23 22:40:54] 2025-11-23 21:40:04,581 | INFO     | [job] validate thread has finished
[2025-11-23 22:40:54] 2025-11-23 21:40:04,582 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 22:40:54] 2025-11-23 21:40:04,647 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 22:40:54] 2025-11-23 21:40:05,166 | INFO     | [data] copytool_out thread has finished
[2025-11-23 22:40:54] 2025-11-23 21:40:05,273 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 22:40:54] 2025-11-23 21:40:09,280 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 22:40:54] 2025-11-23 21:40:32,776 | INFO     | PID=3974822 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 22:40:54] 2025-11-23 21:40:32,777 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 22:40:54] 2025-11-23 21:40:32,777 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 22:40:54] 2025-11-23 21:40:32,777 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 22:40:54] 2025-11-23 21:40:47,959 | INFO     | [monitor] cgroup control has ended
[2025-11-23 22:40:54] 2025-11-23 21:40:49,022 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140160332814144)>', '<ExcThread(monitor, started 140159479707392)>']
[2025-11-23 22:40:54] 2025-11-23 21:40:49,867 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 22:40:54] 2025-11-23 21:40:49,867 | INFO     | [monitor] control thread has ended
[2025-11-23 22:40:54] 2025-11-23 21:40:54,048 | INFO     | all workflow threads have been joined
[2025-11-23 22:40:54] 2025-11-23 21:40:54,048 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 22:40:54] 2025-11-23 21:40:54,049 | INFO     | traces error code: 0
[2025-11-23 22:40:54] 2025-11-23 21:40:54,050 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 22:40:54] 2025-11-23 21:40:54,096 [wrapper] ==== pilot stdout END ====
[2025-11-23 22:40:54] 2025-11-23 21:40:54,100 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 22:40:54] 2025-11-23 21:40:54,103 [wrapper] pilotpid: 3974822
[2025-11-23 22:40:54] 2025-11-23 21:40:54,106 [wrapper] Pilot exit status: 0
[2025-11-23 22:40:54] 2025-11-23 21:40:54,112 [wrapper] pandaids: 6895351381
[2025-11-23 22:40:54] 2025-11-23 21:40:54,128 [wrapper] cleanup supervisor_pilot 3974828 3974823
[2025-11-23 22:40:54] 2025-11-23 21:40:54,130 [wrapper] Test setup, not cleaning
[2025-11-23 22:40:54] 2025-11-23 21:40:54,133 [wrapper] apfmon messages muted
[2025-11-23 22:40:54] 2025-11-23 21:40:54,135 [wrapper] ==== wrapper stdout END ====
[2025-11-23 22:40:54] 2025-11-23 21:40:54,137 [wrapper] ==== wrapper stderr END ====
[2025-11-23 22:40:54]  *** Error codes and diagnostics ***
[2025-11-23 22:40:54]     "exeErrorCode": 65,
[2025-11-23 22:40:54]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-23 22:40:54]     "pilotErrorCode": 1305,
[2025-11-23 22:40:54]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-23 22:40:54]  *** Listing of results directory ***
[2025-11-23 22:40:54] total 402552
[2025-11-23 22:40:54] -rw-r--r-- 1 boinc boinc    576529 Nov 23 01:13 pilot3.tar.gz
[2025-11-23 22:40:54] -rw-r--r-- 1 boinc boinc      5112 Nov 23 01:23 queuedata.json
[2025-11-23 22:40:54] -rwx------ 1 boinc boinc     36292 Nov 23 01:23 runpilot2-wrapper.sh
[2025-11-23 22:40:54] -rw-r--r-- 1 boinc boinc       100 Nov 23 22:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 22:40:54] -rwxr-xr-x 1 boinc boinc      7986 Nov 23 22:36 run_atlas
[2025-11-23 22:40:54] -rw-r--r-- 1 boinc boinc       105 Nov 23 22:36 job.xml
[2025-11-23 22:40:54] -rw-r--r-- 2 boinc boinc 408008784 Nov 23 22:36 EVNT.47483658._000547.pool.root.1
[2025-11-23 22:40:54] -rw-r--r-- 2 boinc boinc    590104 Nov 23 22:36 input.tar.gz
[2025-11-23 22:40:54] -rw-r--r-- 2 boinc boinc     15847 Nov 23 22:36 start_atlas.sh
[2025-11-23 22:40:54] drwxrwx--x 2 boinc boinc      4096 Nov 23 22:36 shared
[2025-11-23 22:40:54] -rw-r--r-- 1 boinc boinc         0 Nov 23 22:36 boinc_setup_complete
[2025-11-23 22:40:54] -rw-r--r-- 1 boinc boinc      6195 Nov 23 22:36 init_data.xml
[2025-11-23 22:40:54] -rw-r--r-- 1 boinc boinc         0 Nov 23 22:36 boinc_lockfile
[2025-11-23 22:40:54] -rw-r--r-- 1 boinc boinc      2785 Nov 23 22:36 pandaJob.out
[2025-11-23 22:40:54] -rw------- 1 boinc boinc    989786 Nov 23 22:36 agis_schedconf.cvmfs.json
[2025-11-23 22:40:54] -rw------- 1 boinc boinc   1526164 Nov 23 22:36 agis_ddmendpoints.agis.ALL.json
[2025-11-23 22:40:54] drwx------ 5 boinc boinc      4096 Nov 23 22:36 pilot3
[2025-11-23 22:40:54] -rw-r--r-- 1 boinc boinc       522 Nov 23 22:37 boinc_task_state.xml
[2025-11-23 22:40:54] -rw------- 1 boinc boinc       939 Nov 23 22:37 memory_monitor_summary.json
[2025-11-23 22:40:54] -rw------- 1 boinc boinc     55829 Nov 23 22:37 log.47556137._005430.job.log.tgz.1
[2025-11-23 22:40:54] -rw------- 1 boinc boinc        95 Nov 23 22:39 pilot_heartbeat.json
[2025-11-23 22:40:54] -rw------- 1 boinc boinc      8402 Nov 23 22:40 heartbeat.json
[2025-11-23 22:40:54] -rw-r--r-- 1 boinc boinc      8192 Nov 23 22:40 boinc_mmap_file
[2025-11-23 22:40:54] -rw-r--r-- 1 boinc boinc        22 Nov 23 22:40 wrapper_checkpoint.txt
[2025-11-23 22:40:54] -rw------- 1 boinc boinc      4752 Nov 23 22:40 pilotlog.txt
[2025-11-23 22:40:54] -rw------- 1 boinc boinc     93253 Nov 23 22:40 log.47556137._005430.job.log.1
[2025-11-23 22:40:54] -rw------- 1 boinc boinc       186 Nov 23 22:40 output.list
[2025-11-23 22:40:54] -rw-r--r-- 1 boinc boinc       620 Nov 23 22:40 runtime_log
[2025-11-23 22:40:54] -rw------- 1 boinc boinc    174080 Nov 23 22:40 result.tar.gz
[2025-11-23 22:40:54] -rw-r--r-- 1 boinc boinc      8744 Nov 23 22:40 runtime_log.err
[2025-11-23 22:40:54] -rw------- 1 boinc boinc       649 Nov 23 22:40 VjhNDmb4Ch8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmqMIKDmrAJAFo.diag
[2025-11-23 22:40:54] -rw-r--r-- 1 boinc boinc      8415 Nov 23 22:40 stderr.txt
[2025-11-23 22:40:54] No HITS result produced
[2025-11-23 22:40:54]  *** Contents of shared directory: ***
[2025-11-23 22:40:54] total 399216
[2025-11-23 22:40:54] -rw-r--r-- 2 boinc boinc 408008784 Nov 23 22:36 ATLAS.root_0
[2025-11-23 22:40:54] -rw-r--r-- 2 boinc boinc    590104 Nov 23 22:36 input.tar.gz
[2025-11-23 22:40:54] -rw-r--r-- 2 boinc boinc     15847 Nov 23 22:36 start_atlas.sh
[2025-11-23 22:40:54] -rw------- 1 boinc boinc    174080 Nov 23 22:40 result.tar.gz
22:40:55 (3971091): run_atlas exited; CPU time 31.994538
22:40:55 (3971091): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN