Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-27 13:18:24 (130357): vboxwrapper version 26210
2025-11-27 13:18:24 (130357): BOINC client version: 8.0.4
2025-11-27 13:18:24 (130357): Detected: VirtualBox VboxManage Interface (Version: 7.1.12)
2025-11-27 13:18:24 (130357): Successfully copied 'init_data.xml' to the shared directory.
2025-11-27 13:18:24 (130357): Create VM. (boinc_b0310d1aae554494, slot#0)
2025-11-27 13:18:24 (130357): Setting Memory Size for VM. (4800MB)
2025-11-27 13:18:24 (130357): Setting CPU Count for VM. (8)
2025-11-27 13:18:24 (130357): Setting Chipset Options for VM.
2025-11-27 13:18:24 (130357): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-27 13:18:25 (130357): Setting Boot Options for VM.
2025-11-27 13:18:25 (130357): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-27 13:18:25 (130357): Enabling VM Network Access.
2025-11-27 13:18:25 (130357): Disabling USB Support for VM.
2025-11-27 13:18:25 (130357): Disabling COM Port Support for VM.
2025-11-27 13:18:25 (130357): Disabling LPT Port Support for VM.
2025-11-27 13:18:25 (130357): Disabling Audio Support for VM.
2025-11-27 13:18:25 (130357): Disabling Clipboard Support for VM.
2025-11-27 13:18:25 (130357): Disabling Drag and Drop Support for VM.
2025-11-27 13:18:25 (130357): Adding storage controller(s) to VM.
2025-11-27 13:18:25 (130357): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-27 13:18:26 (130357): Adding VirtualBox Guest Additions to VM.
2025-11-27 13:18:26 (130357): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-27 13:18:26 (130357): forwarding host port 45323 to guest port 80
2025-11-27 13:18:26 (130357): Enabling remote desktop for VM.
2025-11-27 13:18:26 (130357): Enabling shared directory for VM.
2025-11-27 13:18:27 (130357): Starting VM using VBoxManage interface. (boinc_b0310d1aae554494, slot#0)
2025-11-27 13:18:28 (130357): Successfully started VM. (PID = '130969')
2025-11-27 13:18:28 (130357): Reporting VM Process ID to BOINC.
2025-11-27 13:18:28 (130357): Guest Log: BIOS: VirtualBox 7.1.12
2025-11-27 13:18:28 (130357): Guest Log: CPUID EDX: 0x178bfbff
2025-11-27 13:18:28 (130357): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-27 13:18:28 (130357): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-27 13:18:28 (130357): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-27 13:18:28 (130357): Detected: Web Application Enabled (http://localhost:45323)
2025-11-27 13:18:28 (130357): Detected: Remote Desktop Enabled (localhost:44519)
2025-11-27 13:18:28 (130357): Preference change detected
2025-11-27 13:18:28 (130357): Setting CPU throttle for VM. (100%)
2025-11-27 13:18:28 (130357): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-27 13:18:30 (130357): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-27 13:18:30 (130357): Guest Log: BIOS: Booting from Hard Disk...
2025-11-27 13:18:33 (130357): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-27 13:18:33 (130357): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-27 13:18:33 (130357): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-27 13:18:33 (130357): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-27 13:18:33 (130357): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-27 13:18:33 (130357): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-27 13:18:33 (130357): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-27 13:18:33 (130357): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-27 13:18:33 (130357): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-27 13:18:33 (130357): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-27 13:18:33 (130357): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-27 13:18:33 (130357): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-27 13:18:33 (130357): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-27 13:18:33 (130357): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-27 13:18:33 (130357): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-27 13:18:33 (130357): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-27 13:18:33 (130357): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-27 13:18:33 (130357): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-27 13:18:33 (130357): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-27 13:18:33 (130357): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-27 13:18:33 (130357): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-27 13:18:33 (130357): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-27 13:18:33 (130357): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-27 13:18:33 (130357): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-27 13:18:33 (130357): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-27 13:18:33 (130357): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-27 13:18:33 (130357): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-27 13:18:33 (130357): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-27 13:18:33 (130357): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-27 13:18:33 (130357): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-27 13:18:33 (130357): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-27 13:18:33 (130357): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-27 13:18:40 (130357): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-27 13:18:40 (130357): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-27 13:18:46 (130357): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-27 13:18:46 (130357): Guest Log: 00:00:00.000291 main     Log opened 2025-11-27T04:18:44.327482000Z
2025-11-27 13:18:46 (130357): Guest Log: 00:00:00.000519 main     OS Product: Linux
2025-11-27 13:18:46 (130357): Guest Log: 00:00:00.000751 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-27 13:18:46 (130357): Guest Log: 00:00:00.000851 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-27 13:18:46 (130357): Guest Log: 00:00:00.000910 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-27 13:18:46 (130357): Guest Log: 00:00:00.000912 main     Process ID: 1378
2025-11-27 13:18:46 (130357): Guest Log: 00:00:00.000913 main     Package type: LINUX_64BITS_GENERIC
2025-11-27 13:18:46 (130357): Guest Log: 00:00:00.003025 main     5.2.32 r132073 started. Verbose level = 0
2025-11-27 13:18:47 (130357): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-27 13:18:47 (130357): Guest Log: [INFO] Mounting shared directory
2025-11-27 13:18:47 (130357): Guest Log: [INFO] Checking for init_data.xml
2025-11-27 13:19:01 (130357): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-27 13:19:01 (130357): Guest Log: [INFO] Detected branch: prod
2025-11-27 13:19:01 (130357): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-27 13:19:01 (130357): Guest Log: Copying input files
2025-11-27 13:19:02 (130357): Guest Log: Copied input files into RunAtlas.
2025-11-27 13:19:03 (130357): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-27 13:19:03 (130357): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-27 13:19:03 (130357): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-27 13:19:03 (130357): Guest Log: Further information can be found at the LHC@home message board.
2025-11-27 13:19:15 (130357): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-27 13:19:15 (130357): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-27 13:19:15 (130357): Guest Log: 2.6.3.0 1660 0 30164 153347 4 1 3117639 4096000 0 65024 0 0 n/a 1 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-11-27 13:19:17 (130357): Guest Log: copied the webapp to /var/www
2025-11-27 13:19:17 (130357): Guest Log: ATHENA_PROC_NUMBER=8
2025-11-27 13:19:17 (130357): Guest Log: ATHENA_CORE_NUMBER=8
2025-11-27 13:19:18 (130357): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-27 13:19:18 (130357): Guest Log:  *** Starting ATLAS job. (PandaID=6895351570 taskID=47556137) ***
2025-11-27 14:57:28 (130357): Status Report: Elapsed Time: '6000.000000'
2025-11-27 14:57:28 (130357): Status Report: CPU Time: '31676.250000'
2025-11-27 16:36:29 (130357): Status Report: Elapsed Time: '12000.000000'
2025-11-27 16:36:29 (130357): Status Report: CPU Time: '78703.380000'
2025-11-27 18:15:30 (130357): Status Report: Elapsed Time: '18000.000000'
2025-11-27 18:15:30 (130357): Status Report: CPU Time: '125115.490000'
2025-11-27 19:54:31 (130357): Status Report: Elapsed Time: '24000.000000'
2025-11-27 19:54:31 (130357): Status Report: CPU Time: '171527.840000'
2025-11-27 21:33:31 (130357): Status Report: Elapsed Time: '30000.000000'
2025-11-27 21:33:31 (130357): Status Report: CPU Time: '216948.350000'
2025-11-27 23:12:32 (130357): Status Report: Elapsed Time: '36000.000000'
2025-11-27 23:12:32 (130357): Status Report: CPU Time: '263842.030000'
2025-11-28 00:51:33 (130357): Status Report: Elapsed Time: '42000.000000'
2025-11-28 00:51:33 (130357): Status Report: CPU Time: '310728.140000'
2025-11-28 02:30:34 (130357): Status Report: Elapsed Time: '48000.000000'
2025-11-28 02:30:34 (130357): Status Report: CPU Time: '357284.910000'
2025-11-28 04:09:34 (130357): Status Report: Elapsed Time: '54000.000000'
2025-11-28 04:09:34 (130357): Status Report: CPU Time: '404526.100000'
2025-11-28 05:48:35 (130357): Status Report: Elapsed Time: '60000.000000'
2025-11-28 05:48:35 (130357): Status Report: CPU Time: '451768.850000'
2025-11-28 07:27:36 (130357): Status Report: Elapsed Time: '66000.000000'
2025-11-28 07:27:36 (130357): Status Report: CPU Time: '499009.510000'
2025-11-28 08:59:51 (130357): Guest Log:  *** Job finished ***
2025-11-28 08:59:51 (130357): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-28 08:59:51 (130357): Guest Log: 2025-11-27 23:59:35,951 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-28 08:59:51 (130357): Guest Log: 2025-11-27 23:59:35,951 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-28 08:59:51 (130357): Guest Log: 2025-11-27 23:59:41,759 | INFO     | [monitor] cgroup control has ended
2025-11-28 08:59:51 (130357): Guest Log: 2025-11-27 23:59:42,856 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140598048376640)>', '<ExcThread(monitor, started 140597616695040)>']
2025-11-28 08:59:51 (130357): Guest Log: 2025-11-27 23:59:43,330 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-28 08:59:51 (130357): Guest Log: 2025-11-27 23:59:43,331 | INFO     | [monitor] control thread has ended
2025-11-28 08:59:51 (130357): Guest Log: 2025-11-27 23:59:47,878 | INFO     | all workflow threads have been joined
2025-11-28 08:59:51 (130357): Guest Log: 2025-11-27 23:59:47,878 | INFO     | end of generic workflow (traces error code: 0)
2025-11-28 08:59:51 (130357): Guest Log: 2025-11-27 23:59:47,878 | INFO     | traces error code: 0
2025-11-28 08:59:51 (130357): Guest Log: 2025-11-27 23:59:47,879 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-28 08:59:51 (130357): Guest Log: 2025-11-27 23:59:48,069 [wrapper] ==== pilot stdout END ====
2025-11-28 08:59:51 (130357): Guest Log: 2025-11-27 23:59:48,083 [wrapper] ==== wrapper stdout RESUME ====
2025-11-28 08:59:51 (130357): Guest Log: 2025-11-27 23:59:48,096 [wrapper] pilotpid: 6148
2025-11-28 08:59:51 (130357): Guest Log: 2025-11-27 23:59:48,109 [wrapper] Pilot exit status: 0
2025-11-28 08:59:51 (130357): Guest Log: 2025-11-27 23:59:48,151 [wrapper] pandaids: 6895351570
2025-11-28 08:59:51 (130357): Guest Log: 2025-11-27 23:59:48,232 [wrapper] cleanup supervisor_pilot  4045 6149
2025-11-28 08:59:51 (130357): Guest Log: 2025-11-27 23:59:48,252 [wrapper] Test setup, not cleaning
2025-11-28 08:59:51 (130357): Guest Log: 2025-11-27 23:59:48,271 [wrapper] apfmon messages muted
2025-11-28 08:59:51 (130357): Guest Log: 2025-11-27 23:59:48,283 [wrapper] ==== wrapper stdout END ====
2025-11-28 08:59:51 (130357): Guest Log: 2025-11-27 23:59:48,296 [wrapper] ==== wrapper stderr END ====
2025-11-28 08:59:51 (130357): Guest Log:  *** Error codes and diagnostics ***
2025-11-28 08:59:51 (130357): Guest Log:     "exeErrorCode": 0,
2025-11-28 08:59:51 (130357): Guest Log:     "exeErrorDiag": "",
2025-11-28 08:59:51 (130357): Guest Log:     "pilotErrorCode": 0,
2025-11-28 08:59:51 (130357): Guest Log:     "pilotErrorDiag": "",
2025-11-28 08:59:51 (130357): Guest Log:  *** Listing of results directory ***
2025-11-28 08:59:51 (130357): Guest Log: total 926112
2025-11-28 08:59:51 (130357): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 23 00:28 pilot3.tar.gz
2025-11-28 08:59:51 (130357): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 23 01:02 queuedata.json
2025-11-28 08:59:51 (130357): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 23 01:04 runpilot2-wrapper.sh
2025-11-28 08:59:51 (130357): Guest Log: -rw-r--r--. 1 atlas atlas     15847 Nov 27 04:18 start_atlas.sh
2025-11-28 08:59:51 (130357): Guest Log: -rw-r--r--. 1 atlas atlas    590100 Nov 27 04:18 input.tar.gz
2025-11-28 08:59:51 (130357): Guest Log: -rw-r--r--. 1 atlas atlas      6456 Nov 27 04:18 init_data.xml
2025-11-28 08:59:51 (130357): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 27 04:19 EVNT.47483658._000557.pool.root.1 -> /data/./ATLAS.root_0
2025-11-28 08:59:51 (130357): Guest Log: -rw-r--r--. 1 atlas atlas      2786 Nov 27 04:19 pandaJob.out
2025-11-28 08:59:51 (130357): Guest Log: -rw-------. 1 atlas atlas    991570 Nov 27 04:23 agis_schedconf.cvmfs.json
2025-11-28 08:59:51 (130357): Guest Log: drwx------. 5 atlas atlas      4096 Nov 27 04:24 pilot3
2025-11-28 08:59:51 (130357): Guest Log: -rw-------. 1 atlas atlas 921958090 Nov 27 23:57 HITS.47556137._005525.pool.root.1
2025-11-28 08:59:51 (130357): Guest Log: -rw-------. 1 atlas atlas      1058 Nov 27 23:58 memory_monitor_summary.json
2025-11-28 08:59:51 (130357): Guest Log: -rw-------. 1 atlas atlas   1516240 Nov 27 23:58 agis_ddmendpoints.agis.ALL.json
2025-11-28 08:59:51 (130357): Guest Log: -rw-------. 1 atlas atlas   2290652 Nov 27 23:58 log.47556137._005525.job.log.tgz.1
2025-11-28 08:59:51 (130357): Guest Log: -rw-------. 1 atlas atlas      8656 Nov 27 23:59 heartbeat.json
2025-11-28 08:59:51 (130357): Guest Log: -rw-------. 1 atlas atlas        95 Nov 27 23:59 pilot_heartbeat.json
2025-11-28 08:59:51 (130357): Guest Log: -rw-------. 1 atlas atlas      4991 Nov 27 23:59 pilotlog.txt
2025-11-28 08:59:51 (130357): Guest Log: -rw-------. 1 atlas atlas   8974418 Nov 27 23:59 log.47556137._005525.job.log.1
2025-11-28 08:59:51 (130357): Guest Log: -rw-------. 1 atlas atlas       353 Nov 27 23:59 output.list
2025-11-28 08:59:51 (130357): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 27 23:59 runtime_log
2025-11-28 08:59:51 (130357): Guest Log: -rw-------. 1 atlas atlas  11284480 Nov 27 23:59 result.tar.gz
2025-11-28 08:59:51 (130357): Guest Log: -rw-r--r--. 1 atlas atlas      8761 Nov 27 23:59 runtime_log.err
2025-11-28 08:59:51 (130357): Guest Log: -rw-------. 1 atlas atlas       671 Nov 27 23:59 mxxNDmPhDh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmqUKKDmJy0CZm.diag
2025-11-28 08:59:51 (130357): Guest Log: Looking for outputfile HITS.47556137._005525.pool.root.1
2025-11-28 08:59:51 (130357): Guest Log: HITS file was successfully produced
2025-11-28 08:59:51 (130357): Guest Log: -rw-------. 1 atlas atlas 921958090 Nov 27 23:57 /home/atlas/RunAtlas/HITS.47556137._005525.pool.root.1
2025-11-28 08:59:51 (130357): Guest Log: Successfully finished the ATLAS job!
2025-11-28 08:59:51 (130357): Guest Log: Copying the results back to the shared directory!
2025-11-28 08:59:52 (130357): Guest Log:  *** Contents of shared directory: ***
2025-11-28 08:59:52 (130357): Guest Log: total 414932
2025-11-28 08:59:52 (130357): Guest Log: -rw-r--r--. 1 root root 412980690 Nov 27 04:18 ATLAS.root_0
2025-11-28 08:59:52 (130357): Guest Log: -rw-rw-r--. 1 root root      6456 Nov 27 04:18 init_data.xml
2025-11-28 08:59:52 (130357): Guest Log: -rw-r--r--. 1 root root    590100 Nov 27 04:18 input.tar.gz
2025-11-28 08:59:52 (130357): Guest Log: -rw-r--r--. 1 root root  11284480 Nov 27 23:59 result.tar.gz
2025-11-28 08:59:52 (130357): Guest Log: -rw-r--r--. 1 root root     15847 Nov 27 04:18 start_atlas.sh
2025-11-28 08:59:52 (130357): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-28 08:59:52 (130357): VM Completion File Detected.
2025-11-28 08:59:52 (130357): Powering off VM.
2025-11-28 08:59:53 (130357): Successfully stopped VM.
2025-11-28 08:59:53 (130357): Deregistering VM. (boinc_b0310d1aae554494, slot#0)
2025-11-28 08:59:53 (130357): Removing network bandwidth throttle group from VM.
2025-11-28 08:59:53 (130357): Removing VM from VirtualBox.
2025-11-28 08:59:58 (130357): called boinc_finish(0)

</stderr_txt>
]]>

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