Stderr output

<core_client_version>7.24.5</core_client_version>
<![CDATA[
<stderr_txt>
16:35:23 (1350484): wrapper (7.7.26015): starting
16:35:23 (1350484): wrapper: running run_atlas (--nthreads 4)
[2025-11-23 16:35:23] Arguments: --nthreads 4
[2025-11-23 16:35:23] Threads: 4
[2025-11-23 16:35:23] Checking for CVMFS
[2025-11-23 16:35:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 16:35:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 16:35:23] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 16:35:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 16:35:23] 2.13.2.0 774864 535 56712 153226 1 81 2055331 4096001 5100 130560 0 1703338 99.705 311041 1898 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-23 16:35:23] CVMFS is ok
[2025-11-23 16:35:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 16:35:23] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-23 16:35:23] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-23 16:35:23] Further information can be found at the LHC@home message board.
[2025-11-23 16:35:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 16:35:23] Checking for apptainer binary...
[2025-11-23 16:35:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 16:35:23] Running /usr/bin/apptainer --version
[2025-11-23 16:35:23] apptainer version 1.4.3
[2025-11-23 16:35:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 16:35:23] msi670e
[2025-11-23 16:35:23] apptainer works
[2025-11-23 16:35:23] Set ATHENA_PROC_NUMBER=4
[2025-11-23 16:35:23] Set ATHENA_CORE_NUMBER=4
[2025-11-23 16:35:23] Starting ATLAS job with PandaID=6895342325
[2025-11-23 16:35:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 22:54:20]  *** The last 200 lines of the pilot log: ***
[2025-11-23 22:54:20] 2025-11-24 05:53:47,625 | INFO     | time since job start (22697s) is within the limit (172800.0s)
[2025-11-23 22:54:20] 2025-11-24 05:53:49,489 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-23 22:54:20] 2025-11-24 05:53:49,492 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 5100.282
[2025-11-23 22:54:20] 2025-11-24 05:53:49,495 | INFO     | using path: /var/lib/boinc-client/slots/5/PanDA_Pilot-6895342325/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 22:54:20] 2025-11-24 05:53:49,495 | INFO     | extracted standard info from prmon json
[2025-11-23 22:54:20] 2025-11-24 05:53:49,495 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 22:54:20] 2025-11-24 05:53:49,495 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 22:54:20] 2025-11-24 05:53:49,498 | INFO     | fitting pss+swap vs Time
[2025-11-23 22:54:20] 2025-11-24 05:53:49,498 | INFO     | sum of square deviations: 15962617433.0
[2025-11-23 22:54:20] 2025-11-24 05:53:49,500 | INFO     | sum of deviations: 99270496437.49997
[2025-11-23 22:54:20] 2025-11-24 05:53:49,500 | INFO     | mean x: 1763952264.5
[2025-11-23 22:54:20] 2025-11-24 05:53:49,500 | INFO     | mean y: 2248572.680107527
[2025-11-23 22:54:20] 2025-11-24 05:53:49,500 | INFO     | intersect: -10967657692.627007
[2025-11-23 22:54:20] 2025-11-24 05:53:49,500 | INFO     | chi2: 2.5593607765250526
[2025-11-23 22:54:20] 2025-11-24 05:53:49,500 | INFO     | sum of square deviations: 15327572968.0
[2025-11-23 22:54:20] 2025-11-24 05:53:49,502 | INFO     | sum of deviations: 143416068673.0
[2025-11-23 22:54:20] 2025-11-24 05:53:49,502 | INFO     | mean x: 1763952112.0
[2025-11-23 22:54:20] 2025-11-24 05:53:49,502 | INFO     | mean y: 2259116.2261580382
[2025-11-23 22:54:20] 2025-11-24 05:53:49,502 | INFO     | intersect: -16502576826.074045
[2025-11-23 22:54:20] 2025-11-24 05:53:49,502 | INFO     | chi2: 1.5359182133868712
[2025-11-23 22:54:20] 2025-11-24 05:53:49,502 | INFO     | current chi2=1.5359182133868712 (change=39.98821004546888 %)
[2025-11-23 22:54:20] 2025-11-24 05:53:49,502 | INFO     | sum of square deviations: 14709598590.5
[2025-11-23 22:54:20] 2025-11-24 05:53:49,504 | INFO     | sum of deviations: 139696953115.49994
[2025-11-23 22:54:20] 2025-11-24 05:53:49,504 | INFO     | mean x: 1763951959.5
[2025-11-23 22:54:20] 2025-11-24 05:53:49,504 | INFO     | mean y: 2258198.5607734807
[2025-11-23 22:54:20] 2025-11-24 05:53:49,504 | INFO     | intersect: -16749981005.533619
[2025-11-23 22:54:20] 2025-11-24 05:53:49,504 | INFO     | chi2: 1.5358475801694473
[2025-11-23 22:54:20] 2025-11-24 05:53:49,504 | INFO     | current chi2=1.5358475801694473 (change=0.004598761627293239 %)
[2025-11-23 22:54:20] 2025-11-24 05:53:49,504 | INFO     | right removable region: 361
[2025-11-23 22:54:20] 2025-11-24 05:53:49,504 | INFO     | sum of square deviations: 15327572968.0
[2025-11-23 22:54:20] 2025-11-24 05:53:49,506 | INFO     | sum of deviations: 44780736474.000015
[2025-11-23 22:54:20] 2025-11-24 05:53:49,506 | INFO     | mean x: 1763952417.0
[2025-11-23 22:54:20] 2025-11-24 05:53:49,506 | INFO     | mean y: 2261579.555858311
[2025-11-23 22:54:20] 2025-11-24 05:53:49,506 | INFO     | intersect: -5151267195.238775
[2025-11-23 22:54:20] 2025-11-24 05:53:49,506 | INFO     | chi2: 1.0521573703680394
[2025-11-23 22:54:20] 2025-11-24 05:53:49,506 | INFO     | current chi2=1.0521573703680394 (change=58.8898376493604 %)
[2025-11-23 22:54:20] 2025-11-24 05:53:49,506 | INFO     | sum of square deviations: 14709598590.5
[2025-11-23 22:54:20] 2025-11-24 05:53:49,508 | INFO     | sum of deviations: 41889253239.499886
[2025-11-23 22:54:20] 2025-11-24 05:53:49,508 | INFO     | mean x: 1763952569.5
[2025-11-23 22:54:20] 2025-11-24 05:53:49,508 | INFO     | mean y: 2262293.1961325966
[2025-11-23 22:54:20] 2025-11-24 05:53:49,508 | INFO     | intersect: -5021032899.507041
[2025-11-23 22:54:20] 2025-11-24 05:53:49,508 | INFO     | chi2: 1.0508327386762848
[2025-11-23 22:54:20] 2025-11-24 05:53:49,508 | INFO     | current chi2=1.0508327386762848 (change=0.12589672695931536 %)
[2025-11-23 22:54:20] 2025-11-24 05:53:49,508 | INFO     | left removable region: 20
[2025-11-23 22:54:20] 2025-11-24 05:53:49,508 | INFO     | sum of square deviations: 12295263090.0
[2025-11-23 22:54:20] 2025-11-24 05:53:49,510 | INFO     | sum of deviations: 74894498077.00002
[2025-11-23 22:54:20] 2025-11-24 05:53:49,510 | INFO     | mean x: 1763952539.0
[2025-11-23 22:54:20] 2025-11-24 05:53:49,510 | INFO     | mean y: 2274439.715542522
[2025-11-23 22:54:20] 2025-11-24 05:53:49,510 | INFO     | intersect: -10742541598.218853
[2025-11-23 22:54:20] 2025-11-24 05:53:49,510 | INFO     | chi2: 0.016286679642000586
[2025-11-23 22:54:20] 2025-11-24 05:53:49,510 | INFO     | current memory leak: 6.09 B/s (using 341 data points, chi2=0.02)
[2025-11-23 22:54:20] 2025-11-24 05:53:49,510 | INFO     | could have reported an average CPU frequency of 5036 MHz (16 samples)
[2025-11-23 22:54:20] 2025-11-24 05:53:49,510 | INFO     | ..............................
[2025-11-23 22:54:20] 2025-11-24 05:53:49,510 | INFO     | . Timing measurements:
[2025-11-23 22:54:20] 2025-11-24 05:53:49,510 | INFO     | . get job = 0 s
[2025-11-23 22:54:20] 2025-11-24 05:53:49,510 | INFO     | . initial setup = 2 s
[2025-11-23 22:54:20] 2025-11-24 05:53:49,510 | INFO     | . payload setup = 2 s
[2025-11-23 22:54:20] 2025-11-24 05:53:49,510 | INFO     | . stage-in = 0 s
[2025-11-23 22:54:20] 2025-11-24 05:53:49,510 | INFO     | . payload execution = 22670 s
[2025-11-23 22:54:20] 2025-11-24 05:53:49,510 | INFO     | . stage-out = 3 s
[2025-11-23 22:54:20] 2025-11-24 05:53:49,510 | INFO     | . log creation = 0 s
[2025-11-23 22:54:20] 2025-11-24 05:53:49,510 | INFO     | ..............................
[2025-11-23 22:54:20] 2025-11-24 05:53:49,551 | INFO     | 
[2025-11-23 22:54:20] 2025-11-24 05:53:49,551 | INFO     | job summary report
[2025-11-23 22:54:20] 2025-11-24 05:53:49,551 | INFO     | --------------------------------------------------
[2025-11-23 22:54:20] 2025-11-24 05:53:49,551 | INFO     | PanDA job id: 6895342325
[2025-11-23 22:54:20] 2025-11-24 05:53:49,551 | INFO     | task id: 47556149
[2025-11-23 22:54:20] 2025-11-24 05:53:49,551 | INFO     | errors: (none)
[2025-11-23 22:54:20] 2025-11-24 05:53:49,551 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 22:54:20] 2025-11-24 05:53:49,551 | INFO     | pilot state: finished 
[2025-11-23 22:54:20] 2025-11-24 05:53:49,552 | INFO     | transexitcode: 0
[2025-11-23 22:54:20] 2025-11-24 05:53:49,552 | INFO     | exeerrorcode: 0
[2025-11-23 22:54:20] 2025-11-24 05:53:49,552 | INFO     | exeerrordiag: 
[2025-11-23 22:54:20] 2025-11-24 05:53:49,552 | INFO     | exitcode: 0
[2025-11-23 22:54:20] 2025-11-24 05:53:49,552 | INFO     | exitmsg: OK
[2025-11-23 22:54:20] 2025-11-24 05:53:49,552 | INFO     | cpuconsumptiontime: 89505 s
[2025-11-23 22:54:20] 2025-11-24 05:53:49,552 | INFO     | nevents: 1000
[2025-11-23 22:54:20] 2025-11-24 05:53:49,552 | INFO     | neventsw: 0
[2025-11-23 22:54:20] 2025-11-24 05:53:49,552 | INFO     | pid: 1361006
[2025-11-23 22:54:20] 2025-11-24 05:53:49,552 | INFO     | pgrp: 1361006
[2025-11-23 22:54:20] 2025-11-24 05:53:49,552 | INFO     | corecount: 4
[2025-11-23 22:54:20] 2025-11-24 05:53:49,552 | INFO     | event service: False
[2025-11-23 22:54:20] 2025-11-24 05:53:49,552 | INFO     | sizes: {0: 2298811, 2: 2299073, 11: 2299101, 22677: 2334923, 22681: 2343931, 22683: 2343987, 22686: 2344361}
[2025-11-23 22:54:20] 2025-11-24 05:53:49,552 | INFO     | --------------------------------------------------
[2025-11-23 22:54:20] 2025-11-24 05:53:49,552 | INFO     | 
[2025-11-23 22:54:20] 2025-11-24 05:53:49,552 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/5
[2025-11-23 22:54:20] 2025-11-24 05:53:49,563 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 22:54:20] 2025-11-24 05:53:49,563 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 22:54:20] 2025-11-24 05:53:49,564 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 22:54:20] 2025-11-24 05:53:49,564 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 22:54:20] 2025-11-24 05:53:49,564 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 22:54:20] 2025-11-24 05:53:49,564 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 22:54:20] 2025-11-24 05:53:49,564 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 22:54:20] 2025-11-24 05:53:49,564 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 22:54:20] 2025-11-24 05:53:49,564 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 22:54:20] 2025-11-24 05:53:49,564 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 22:54:20] 2025-11-24 05:53:49,564 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 22:54:20] 2025-11-24 05:53:49,564 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 22:54:20] 2025-11-24 05:53:49,564 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 22:54:20] 2025-11-24 05:53:49,564 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 22:54:20] 2025-11-24 05:53:49,564 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 22:54:20] 2025-11-24 05:53:49,564 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 22:54:20] 2025-11-24 05:53:49,564 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 22:54:20] 2025-11-24 05:53:49,564 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 22:54:20] 2025-11-24 05:53:49,564 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 22:54:20] 2025-11-24 05:53:49,564 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 22:54:20] 2025-11-24 05:53:49,564 | INFO     | job 6895342325 has completed (purged errors)
[2025-11-23 22:54:20] 2025-11-24 05:53:49,564 | INFO     | overall cleanup function is called
[2025-11-23 22:54:20] 2025-11-24 05:53:50,573 | INFO     | --- collectZombieJob: --- 10, [1361006]
[2025-11-23 22:54:20] 2025-11-24 05:53:50,573 | INFO     | zombie collector waiting for pid 1361006
[2025-11-23 22:54:20] 2025-11-24 05:53:50,573 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 22:54:20] 2025-11-24 05:53:50,573 | INFO     | collected zombie processes
[2025-11-23 22:54:20] 2025-11-24 05:53:50,573 | INFO     | will attempt to kill all subprocesses of pid=1361006
[2025-11-23 22:54:20] 2025-11-24 05:53:50,652 | INFO     | process IDs to be killed: [1361006] (in reverse order)
[2025-11-23 22:54:20] 2025-11-24 05:53:50,690 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 22:54:20] 2025-11-24 05:53:50,690 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 22:54:20] 2025-11-24 05:53:50,693 | INFO     | did not find any defunct processes belonging to 1361006
[2025-11-23 22:54:20] 2025-11-24 05:53:50,695 | INFO     | did not find any defunct processes belonging to 1361006
[2025-11-23 22:54:20] 2025-11-24 05:53:50,696 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 22:54:20] 2025-11-24 05:53:50,696 | INFO     | ready for new job
[2025-11-23 22:54:20] 2025-11-24 05:53:50,696 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 22:54:20] 2025-11-24 05:53:50,697 | INFO     | ***************************************
[2025-11-23 22:54:20] 2025-11-24 05:53:50,697 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 22:54:20] 2025-11-24 05:53:50,697 | INFO     | ***************************************
[2025-11-23 22:54:20] 2025-11-24 05:53:50,697 | INFO     | 
[2025-11-23 22:54:20] 2025-11-24 05:53:50,698 | INFO     | architecture information:
[2025-11-23 22:54:20] 2025-11-24 05:53:50,699 | INFO     | executing command: cat /etc/os-release
[2025-11-23 22:54:20] 2025-11-24 05:53:50,708 | INFO     | cat /etc/os-release:
[2025-11-23 22:54:20] NAME="CentOS Linux"
[2025-11-23 22:54:20] VERSION="7 (Core)"
[2025-11-23 22:54:20] ID="centos"
[2025-11-23 22:54:20] ID_LIKE="rhel fedora"
[2025-11-23 22:54:20] VERSION_ID="7"
[2025-11-23 22:54:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 22:54:20] ANSI_COLOR="0;31"
[2025-11-23 22:54:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 22:54:20] HOME_URL="https://www.centos.org/"
[2025-11-23 22:54:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 22:54:20] 
[2025-11-23 22:54:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 22:54:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 22:54:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 22:54:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 22:54:20] 
[2025-11-23 22:54:20] 2025-11-24 05:53:50,708 | INFO     | ***************************************
[2025-11-23 22:54:20] 2025-11-24 05:53:51,210 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/5
[2025-11-23 22:54:20] 2025-11-24 05:53:51,220 | INFO     | sufficient remaining disk space (439241146368 B)
[2025-11-23 22:54:20] 2025-11-24 05:53:51,220 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 22:54:20] 2025-11-24 05:53:51,220 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 22:54:20] 2025-11-24 05:53:51,221 | INFO     | update_server=False
[2025-11-23 22:54:20] 2025-11-24 05:53:51,221 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 22:54:20] 2025-11-24 05:53:51,221 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 22:54:20] 2025-11-24 05:53:51,221 | INFO     | aborting loop
[2025-11-23 22:54:20] 2025-11-24 05:53:51,221 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 22:54:20] 2025-11-24 05:53:51,971 | INFO     | all data control threads have been joined
[2025-11-23 22:54:20] 2025-11-24 05:53:52,225 | INFO     | [job] job monitor thread has finished
[2025-11-23 22:54:20] 2025-11-24 05:53:52,225 | INFO     | [job] queue monitor thread has finished
[2025-11-23 22:54:20] 2025-11-24 05:53:52,226 | INFO     | [job] retrieve thread has finished
[2025-11-23 22:54:20] 2025-11-24 05:53:52,229 | INFO     | all job control threads have been joined
[2025-11-23 22:54:20] 2025-11-24 05:53:52,318 | INFO     | all payload control threads have been joined
[2025-11-23 22:54:20] 2025-11-24 05:53:52,348 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 22:54:20] 2025-11-24 05:53:52,587 | INFO     | [payload] validate_post thread has finished
[2025-11-23 22:54:20] 2025-11-24 05:53:52,851 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 22:54:20] 2025-11-24 05:53:52,906 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 22:54:20] 2025-11-24 05:53:52,976 | INFO     | [data] control thread has finished
[2025-11-23 22:54:20] 2025-11-24 05:53:53,057 | INFO     | [job] validate thread has finished
[2025-11-23 22:54:20] 2025-11-24 05:53:53,082 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 22:54:20] 2025-11-24 05:53:53,234 | INFO     | [job] control thread has finished
[2025-11-23 22:54:20] 2025-11-24 05:53:53,323 | INFO     | [payload] control thread has finished
[2025-11-23 22:54:20] 2025-11-24 05:53:53,358 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 22:54:20] 2025-11-24 05:53:53,488 | INFO     | [payload] failed_post thread has finished
[2025-11-23 22:54:20] 2025-11-24 05:53:53,627 | INFO     | [data] copytool_in thread has finished
[2025-11-23 22:54:20] 2025-11-24 05:53:54,353 | INFO     | [data] copytool_out thread has finished
[2025-11-23 22:54:20] 2025-11-24 05:53:56,854 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 22:54:20] 2025-11-24 05:54:02,158 | INFO     | job.realtimelogging is not enabled
[2025-11-23 22:54:20] 2025-11-24 05:54:03,163 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 22:54:20] 2025-11-24 05:54:07,855 | INFO     | [monitor] cgroup control has ended
[2025-11-23 22:54:20] 2025-11-24 05:54:08,889 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 137069958772544)>', '<ExcThread(monitor, started 137068646758144)>']
[2025-11-23 22:54:20] 2025-11-24 05:54:13,914 | INFO     | all workflow threads have been joined
[2025-11-23 22:54:20] 2025-11-24 05:54:13,914 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 22:54:20] 2025-11-24 05:54:13,914 | INFO     | traces error code: 0
[2025-11-23 22:54:20] 2025-11-24 05:54:13,914 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 22:54:20] 2025-11-24 05:54:20,775 | INFO     | PID=1354339 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 22:54:20] 2025-11-24 05:54:20,776 | INFO     | .. there are 7 such processes running
[2025-11-23 22:54:20] 2025-11-24 05:54:20,776 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 22:54:20] 2025-11-24 05:54:20,776 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 22:54:20] 2025-11-24 05:54:20,776 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 22:54:20] 2025-11-24 05:54:20,776 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 22:54:20] 2025-11-24 05:54:20,776 | CRITICAL | thread 'MainThread' is not alive
[2025-11-23 22:54:20] 2025-11-24 05:54:20,776 | INFO     | [monitor] control thread has ended
[2025-11-23 22:54:20] 2025-11-24 05:54:20,830 [wrapper] ==== pilot stdout END ====
[2025-11-23 22:54:20] 2025-11-24 05:54:20,832 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 22:54:20] 2025-11-24 05:54:20,833 [wrapper] pilotpid: 1354339
[2025-11-23 22:54:20] 2025-11-24 05:54:20,835 [wrapper] Pilot exit status: 0
[2025-11-23 22:54:20] 2025-11-24 05:54:20,840 [wrapper] pandaids: 6895342325
[2025-11-23 22:54:20] 2025-11-24 05:54:20,863 [wrapper] cleanup supervisor_pilot 1704358 1354340
[2025-11-23 22:54:20] 2025-11-24 05:54:20,865 [wrapper] Test setup, not cleaning
[2025-11-23 22:54:20] 2025-11-24 05:54:20,866 [wrapper] apfmon messages muted
[2025-11-23 22:54:20] 2025-11-24 05:54:20,868 [wrapper] ==== wrapper stdout END ====
[2025-11-23 22:54:20] 2025-11-24 05:54:20,869 [wrapper] ==== wrapper stderr END ====
[2025-11-23 22:54:20]  *** Error codes and diagnostics ***
[2025-11-23 22:54:20]     "exeErrorCode": 0,
[2025-11-23 22:54:20]     "exeErrorDiag": "",
[2025-11-23 22:54:20]     "pilotErrorCode": 0,
[2025-11-23 22:54:20]     "pilotErrorDiag": "",
[2025-11-23 22:54:20]  *** Listing of results directory ***
[2025-11-23 22:54:20] total 1312388
[2025-11-23 22:54:20] -rw-r--r-- 1 boinc boinc    576529 Nov 22 08:04 pilot3.tar.gz
[2025-11-23 22:54:20] -rwx------ 1 boinc boinc     36292 Nov 22 08:11 runpilot2-wrapper.sh
[2025-11-23 22:54:20] -rw-r--r-- 1 boinc boinc      5112 Nov 22 08:11 queuedata.json
[2025-11-23 22:54:20] -rw-r--r-- 1 boinc boinc       100 Nov 23 16:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 22:54:20] -rwxr-xr-x 1 boinc boinc      7986 Nov 23 16:35 run_atlas
[2025-11-23 22:54:20] -rw-r--r-- 1 boinc boinc       105 Nov 23 16:35 job.xml
[2025-11-23 22:54:20] -rw-r--r-- 2 boinc boinc 411137013 Nov 23 16:35 EVNT.47483658._001095.pool.root.1
[2025-11-23 22:54:20] -rw-r--r-- 2 boinc boinc     15847 Nov 23 16:35 start_atlas.sh
[2025-11-23 22:54:20] drwxrwx--x 2 boinc boinc      4096 Nov 23 16:35 shared
[2025-11-23 22:54:20] -rw-r--r-- 2 boinc boinc    590102 Nov 23 16:35 input.tar.gz
[2025-11-23 22:54:20] -rw-r--r-- 1 boinc boinc      9946 Nov 23 16:35 init_data.xml
[2025-11-23 22:54:20] -rw-r--r-- 1 boinc boinc         0 Nov 23 16:35 boinc_lockfile
[2025-11-23 22:54:20] -rw-r--r-- 1 boinc boinc      2784 Nov 23 16:35 pandaJob.out
[2025-11-23 22:54:20] -rw------- 1 boinc boinc    989786 Nov 23 16:35 agis_schedconf.cvmfs.json
[2025-11-23 22:54:20] drwx------ 5 boinc boinc      4096 Nov 23 16:35 pilot3
[2025-11-23 22:54:20] -rw-r--r-- 1 boinc boinc       531 Nov 23 22:49 boinc_task_state.xml
[2025-11-23 22:54:20] -rw------- 1 boinc boinc 919811079 Nov 23 22:53 HITS.47556149._000814.pool.root.1
[2025-11-23 22:54:20] -rw------- 1 boinc boinc      1032 Nov 23 22:53 memory_monitor_summary.json
[2025-11-23 22:54:20] -rw------- 1 boinc boinc   1526164 Nov 23 22:53 agis_ddmendpoints.agis.ALL.json
[2025-11-23 22:54:20] -rw------- 1 boinc boinc   1212082 Nov 23 22:53 log.47556149._000814.job.log.tgz.1
[2025-11-23 22:54:20] -rw------- 1 boinc boinc      8541 Nov 23 22:53 heartbeat.json
[2025-11-23 22:54:20] -rw-r--r-- 1 boinc boinc      8192 Nov 23 22:54 boinc_mmap_file
[2025-11-23 22:54:20] -rw-r--r-- 1 boinc boinc        28 Nov 23 22:54 wrapper_checkpoint.txt
[2025-11-23 22:54:20] -rw------- 1 boinc boinc       892 Nov 23 22:54 pilotlog.txt
[2025-11-23 22:54:20] -rw------- 1 boinc boinc        95 Nov 23 22:54 pilot_heartbeat.json
[2025-11-23 22:54:20] -rw------- 1 boinc boinc   3295639 Nov 23 22:54 log.47556149._000814.job.log.1
[2025-11-23 22:54:20] -rw------- 1 boinc boinc       353 Nov 23 22:54 output.list
[2025-11-23 22:54:20] -rw-r--r-- 1 boinc boinc       620 Nov 23 22:54 runtime_log
[2025-11-23 22:54:20] -rw------- 1 boinc boinc   4526080 Nov 23 22:54 result.tar.gz
[2025-11-23 22:54:20] -rw------- 1 boinc boinc       660 Nov 23 22:54 WBRODm2R4g8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmX9HKDmqRy5Ln.diag
[2025-11-23 22:54:20] -rw-r--r-- 1 boinc boinc      8920 Nov 23 22:54 runtime_log.err
[2025-11-23 22:54:20] -rw-r--r-- 1 boinc boinc     21265 Nov 23 22:54 stderr.txt
[2025-11-23 22:54:20] HITS file was successfully produced:
[2025-11-23 22:54:20] -rw------- 1 boinc boinc 919811079 Nov 23 22:53 shared/HITS.pool.root.1
[2025-11-23 22:54:20]  *** Contents of shared directory: ***
[2025-11-23 22:54:20] total 1304784
[2025-11-23 22:54:20] -rw-r--r-- 2 boinc boinc 411137013 Nov 23 16:35 ATLAS.root_0
[2025-11-23 22:54:20] -rw-r--r-- 2 boinc boinc     15847 Nov 23 16:35 start_atlas.sh
[2025-11-23 22:54:20] -rw-r--r-- 2 boinc boinc    590102 Nov 23 16:35 input.tar.gz
[2025-11-23 22:54:20] -rw------- 1 boinc boinc 919811079 Nov 23 22:53 HITS.pool.root.1
[2025-11-23 22:54:20] -rw------- 1 boinc boinc   4526080 Nov 23 22:54 result.tar.gz
22:54:22 (1350484): run_atlas exited; CPU time 89500.713863
22:54:22 (1350484): called boinc_finish(0)

</stderr_txt>
]]>

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