Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
22:19:00 (3887720): wrapper (7.7.26015): starting
22:19:00 (3887720): wrapper: running run_atlas (--nthreads 3)
[2025-11-23 22:19:00] Arguments: --nthreads 3
[2025-11-23 22:19:00] Threads: 3
[2025-11-23 22:19:00] Checking for CVMFS
[2025-11-23 22:19:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 22:19:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 22:19:00] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 22:19:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 22:19:01] 2.9.2.0 3845697 8 51612 153221 3 88 34905031 36864001 0 130560 0 125232 99.999 1294 14704 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-23 22:19:01] CVMFS is ok
[2025-11-23 22:19:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 22:19:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 22:19:01] Further information can be found at the LHC@home message board.
[2025-11-23 22:19:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 22:19:01] Checking for apptainer binary...
[2025-11-23 22:19:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 22:19:01] Running /usr/bin/apptainer --version
[2025-11-23 22:19:01] apptainer version 1.4.1-1.1
[2025-11-23 22:19:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 22:19:01] thA335
[2025-11-23 22:19:01] apptainer works
[2025-11-23 22:19:01] Set ATHENA_PROC_NUMBER=3
[2025-11-23 22:19:01] Set ATHENA_CORE_NUMBER=3
[2025-11-23 22:19:01] Starting ATLAS job with PandaID=6895342400
[2025-11-23 22:19:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 22:23:21]  *** The last 200 lines of the pilot log: ***
[2025-11-23 22:23:21] 2025-11-23 21:22:33,614 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 22:23:21] 2025-11-23 21:22:33,614 | INFO     | update_server=False
[2025-11-23 22:23:21] 2025-11-23 21:22:33,615 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 22:23:21] 2025-11-23 21:22:33,615 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 22:23:21] 2025-11-23 21:22:33,615 | INFO     | aborting loop
[2025-11-23 22:23:21] 2025-11-23 21:22:33,615 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 22:23:21] 2025-11-23 21:22:34,222 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 22:23:21] 2025-11-23 21:22:34,331 | INFO     | all job control threads have been joined
[2025-11-23 22:23:21] 2025-11-23 21:22:34,465 | INFO     | all data control threads have been joined
[2025-11-23 22:23:21] 2025-11-23 21:22:34,620 | INFO     | [job] job monitor thread has finished
[2025-11-23 22:23:21] 2025-11-23 21:22:34,621 | INFO     | [job] retrieve thread has finished
[2025-11-23 22:23:21] 2025-11-23 21:22:34,622 | INFO     | [job] queue monitor thread has finished
[2025-11-23 22:23:21] 2025-11-23 21:22:34,791 | INFO     | [payload] failed_post thread has finished
[2025-11-23 22:23:21] 2025-11-23 21:22:34,909 | INFO     | all payload control threads have been joined
[2025-11-23 22:23:21] 2025-11-23 21:22:35,223 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 22:23:21] 2025-11-23 21:22:35,312 | INFO     | [data] copytool_in thread has finished
[2025-11-23 22:23:21] 2025-11-23 21:22:35,337 | INFO     | [job] control thread has finished
[2025-11-23 22:23:21] 2025-11-23 21:22:35,471 | INFO     | [data] control thread has finished
[2025-11-23 22:23:21] 2025-11-23 21:22:35,697 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 22:23:21] 2025-11-23 21:22:35,776 | INFO     | [payload] validate_post thread has finished
[2025-11-23 22:23:21] 2025-11-23 21:22:35,852 | INFO     | [job] validate thread has finished
[2025-11-23 22:23:21] 2025-11-23 21:22:35,915 | INFO     | [payload] control thread has finished
[2025-11-23 22:23:21] 2025-11-23 21:22:35,943 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 22:23:21] 2025-11-23 21:22:35,992 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 22:23:21] 2025-11-23 21:22:36,229 | INFO     | [data] copytool_out thread has finished
[2025-11-23 22:23:21] 2025-11-23 21:22:36,531 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 22:23:21] 2025-11-23 21:22:40,537 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 22:23:21] 2025-11-23 21:23:03,726 | INFO     | PID=3891459 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 22:23:21] 2025-11-23 21:23:03,726 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 22:23:21] 2025-11-23 21:23:03,726 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 22:23:21] 2025-11-23 21:23:03,726 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 22:23:21] 2025-11-23 21:23:14,655 | INFO     | [monitor] cgroup control has ended
[2025-11-23 22:23:21] 2025-11-23 21:23:16,389 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140354582558528)>', '<ExcThread(monitor, started 140353801799424)>']
[2025-11-23 22:23:21] 2025-11-23 21:23:16,795 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 22:23:21] 2025-11-23 21:23:16,796 | INFO     | [monitor] control thread has ended
[2025-11-23 22:23:21] 2025-11-23 21:23:21,415 | INFO     | all workflow threads have been joined
[2025-11-23 22:23:21] 2025-11-23 21:23:21,416 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 22:23:21] 2025-11-23 21:23:21,417 | INFO     | traces error code: 0
[2025-11-23 22:23:21] 2025-11-23 21:23:21,417 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 22:23:21] 2025-11-23 21:23:21,465 [wrapper] ==== pilot stdout END ====
[2025-11-23 22:23:21] 2025-11-23 21:23:21,468 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 22:23:21] 2025-11-23 21:23:21,470 [wrapper] pilotpid: 3891459
[2025-11-23 22:23:21] 2025-11-23 21:23:21,473 [wrapper] Pilot exit status: 0
[2025-11-23 22:23:21] 2025-11-23 21:23:21,480 [wrapper] pandaids: 6895342400
[2025-11-23 22:23:21] 2025-11-23 21:23:21,498 [wrapper] cleanup supervisor_pilot 3891465 3891460
[2025-11-23 22:23:21] 2025-11-23 21:23:21,500 [wrapper] Test setup, not cleaning
[2025-11-23 22:23:21] 2025-11-23 21:23:21,503 [wrapper] apfmon messages muted
[2025-11-23 22:23:21] 2025-11-23 21:23:21,505 [wrapper] ==== wrapper stdout END ====
[2025-11-23 22:23:21] 2025-11-23 21:23:21,508 [wrapper] ==== wrapper stderr END ====
[2025-11-23 22:23:21]  *** Error codes and diagnostics ***
[2025-11-23 22:23:21]     "exeErrorCode": 65,
[2025-11-23 22:23:21]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-23 22:23:21]     "pilotErrorCode": 1305,
[2025-11-23 22:23:21]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-23 22:23:21]  *** Listing of results directory ***
[2025-11-23 22:23:21] total 405172
[2025-11-23 22:23:21] -rw-r--r-- 1 boinc boinc    576529 Nov 22 16:04 pilot3.tar.gz
[2025-11-23 22:23:21] -rw-r--r-- 1 boinc boinc      5112 Nov 22 16:12 queuedata.json
[2025-11-23 22:23:21] -rwx------ 1 boinc boinc     36292 Nov 22 16:14 runpilot2-wrapper.sh
[2025-11-23 22:23:21] -rw-r--r-- 1 boinc boinc       100 Nov 23 22:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 22:23:21] -rwxr-xr-x 1 boinc boinc      7986 Nov 23 22:19 run_atlas
[2025-11-23 22:23:21] -rw-r--r-- 1 boinc boinc       105 Nov 23 22:19 job.xml
[2025-11-23 22:23:21] -rw-r--r-- 2 boinc boinc 410697528 Nov 23 22:19 EVNT.47483658._000405.pool.root.1
[2025-11-23 22:23:21] drwxrwx--x 2 boinc boinc      4096 Nov 23 22:19 shared
[2025-11-23 22:23:21] -rw-r--r-- 2 boinc boinc    590102 Nov 23 22:19 input.tar.gz
[2025-11-23 22:23:21] -rw-r--r-- 2 boinc boinc     15847 Nov 23 22:19 start_atlas.sh
[2025-11-23 22:23:21] -rw-r--r-- 1 boinc boinc         0 Nov 23 22:19 boinc_setup_complete
[2025-11-23 22:23:21] -rw-r--r-- 1 boinc boinc      6195 Nov 23 22:19 init_data.xml
[2025-11-23 22:23:21] -rw-r--r-- 1 boinc boinc         0 Nov 23 22:19 boinc_lockfile
[2025-11-23 22:23:21] -rw-r--r-- 1 boinc boinc      2785 Nov 23 22:19 pandaJob.out
[2025-11-23 22:23:21] -rw------- 1 boinc boinc    989786 Nov 23 22:19 agis_schedconf.cvmfs.json
[2025-11-23 22:23:21] -rw------- 1 boinc boinc   1526164 Nov 23 22:19 agis_ddmendpoints.agis.ALL.json
[2025-11-23 22:23:21] drwx------ 5 boinc boinc      4096 Nov 23 22:19 pilot3
[2025-11-23 22:23:21] -rw-r--r-- 1 boinc boinc       522 Nov 23 22:20 boinc_task_state.xml
[2025-11-23 22:23:21] -rw------- 1 boinc boinc       954 Nov 23 22:20 memory_monitor_summary.json
[2025-11-23 22:23:21] -rw------- 1 boinc boinc     55780 Nov 23 22:20 log.47556137._004007.job.log.tgz.1
[2025-11-23 22:23:21] -rw------- 1 boinc boinc        95 Nov 23 22:22 pilot_heartbeat.json
[2025-11-23 22:23:21] -rw------- 1 boinc boinc      8403 Nov 23 22:22 heartbeat.json
[2025-11-23 22:23:21] -rw-r--r-- 1 boinc boinc      8192 Nov 23 22:23 boinc_mmap_file
[2025-11-23 22:23:21] -rw-r--r-- 1 boinc boinc        22 Nov 23 22:23 wrapper_checkpoint.txt
[2025-11-23 22:23:21] -rw------- 1 boinc boinc      4752 Nov 23 22:23 pilotlog.txt
[2025-11-23 22:23:21] -rw------- 1 boinc boinc     93749 Nov 23 22:23 log.47556137._004007.job.log.1
[2025-11-23 22:23:21] -rw------- 1 boinc boinc       186 Nov 23 22:23 output.list
[2025-11-23 22:23:21] -rw-r--r-- 1 boinc boinc       620 Nov 23 22:23 runtime_log
[2025-11-23 22:23:21] -rw------- 1 boinc boinc    174080 Nov 23 22:23 result.tar.gz
[2025-11-23 22:23:21] -rw-r--r-- 1 boinc boinc      8744 Nov 23 22:23 runtime_log.err
[2025-11-23 22:23:21] -rw------- 1 boinc boinc       649 Nov 23 22:23 UUOMDm1U4g8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmqDKKDmA12pBn.diag
[2025-11-23 22:23:21] -rw-r--r-- 1 boinc boinc      7889 Nov 23 22:23 stderr.txt
[2025-11-23 22:23:21] No HITS result produced
[2025-11-23 22:23:21]  *** Contents of shared directory: ***
[2025-11-23 22:23:21] total 401844
[2025-11-23 22:23:21] -rw-r--r-- 2 boinc boinc 410697528 Nov 23 22:19 ATLAS.root_0
[2025-11-23 22:23:21] -rw-r--r-- 2 boinc boinc    590102 Nov 23 22:19 input.tar.gz
[2025-11-23 22:23:21] -rw-r--r-- 2 boinc boinc     15847 Nov 23 22:19 start_atlas.sh
[2025-11-23 22:23:21] -rw------- 1 boinc boinc    174080 Nov 23 22:23 result.tar.gz
22:23:22 (3887720): run_atlas exited; CPU time 32.197133
22:23:22 (3887720): called boinc_finish(0)

</stderr_txt>
]]>

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