Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:34:47 (3824292): wrapper (7.7.26015): starting
21:34:47 (3824292): wrapper: running run_atlas (--nthreads 3)
[2025-11-23 21:34:47] Arguments: --nthreads 3
[2025-11-23 21:34:47] Threads: 3
[2025-11-23 21:34:47] Checking for CVMFS
[2025-11-23 21:34:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 21:34:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 21:34:47] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 21:34:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 21:34:47] 2.9.2.0 3719626 23 56076 153220 1 88 34901814 36864001 0 130560 0 313047 100.000 1296 48000 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-23 21:34:47] CVMFS is ok
[2025-11-23 21:34:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 21:34:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 21:34:47] Further information can be found at the LHC@home message board.
[2025-11-23 21:34:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 21:34:47] Checking for apptainer binary...
[2025-11-23 21:34:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 21:34:47] Running /usr/bin/apptainer --version
[2025-11-23 21:34:47] apptainer version 1.4.1-1.1
[2025-11-23 21:34:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 21:34:47] thA335
[2025-11-23 21:34:47] apptainer works
[2025-11-23 21:34:47] Set ATHENA_PROC_NUMBER=3
[2025-11-23 21:34:47] Set ATHENA_CORE_NUMBER=3
[2025-11-23 21:34:48] Starting ATLAS job with PandaID=6895351601
[2025-11-23 21:34:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 21:39:07]  *** The last 200 lines of the pilot log: ***
[2025-11-23 21:39:07] 2025-11-23 20:38:15,351 | INFO     | update_server=False
[2025-11-23 21:39:07] 2025-11-23 20:38:15,351 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 21:39:07] 2025-11-23 20:38:15,352 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 21:39:07] 2025-11-23 20:38:15,352 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 21:39:07] 2025-11-23 20:38:15,845 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-23 21:39:07] 2025-11-23 20:38:15,846 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-23 21:39:07] 2025-11-23 20:38:15,846 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 21:39:07] 2025-11-23 20:38:15,846 | INFO     | will abort loop
[2025-11-23 21:39:07] 2025-11-23 20:38:16,159 | INFO     | all data control threads have been joined
[2025-11-23 21:39:07] 2025-11-23 20:38:16,357 | INFO     | [job] retrieve thread has finished
[2025-11-23 21:39:07] 2025-11-23 20:38:16,358 | INFO     | [job] queue monitor thread has finished
[2025-11-23 21:39:07] 2025-11-23 20:38:16,462 | INFO     | all payload control threads have been joined
[2025-11-23 21:39:07] 2025-11-23 20:38:16,467 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 21:39:07] 2025-11-23 20:38:16,481 | INFO     | [data] copytool_in thread has finished
[2025-11-23 21:39:07] 2025-11-23 20:38:16,852 | INFO     | [job] job monitor thread has finished
[2025-11-23 21:39:07] 2025-11-23 20:38:16,942 | INFO     | [payload] failed_post thread has finished
[2025-11-23 21:39:07] 2025-11-23 20:38:17,033 | INFO     | all job control threads have been joined
[2025-11-23 21:39:07] 2025-11-23 20:38:17,074 | INFO     | [payload] validate_post thread has finished
[2025-11-23 21:39:07] 2025-11-23 20:38:17,165 | INFO     | [data] control thread has finished
[2025-11-23 21:39:07] 2025-11-23 20:38:17,358 | INFO     | [data] copytool_out thread has finished
[2025-11-23 21:39:07] 2025-11-23 20:38:17,443 | INFO     | [job] validate thread has finished
[2025-11-23 21:39:07] 2025-11-23 20:38:17,468 | INFO     | [payload] control thread has finished
[2025-11-23 21:39:07] 2025-11-23 20:38:17,519 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 21:39:07] 2025-11-23 20:38:17,577 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 21:39:07] 2025-11-23 20:38:17,771 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 21:39:07] 2025-11-23 20:38:18,039 | INFO     | [job] control thread has finished
[2025-11-23 21:39:07] 2025-11-23 20:38:18,134 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 21:39:07] 2025-11-23 20:38:22,142 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 21:39:07] 2025-11-23 20:38:45,566 | INFO     | PID=3828024 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 21:39:07] 2025-11-23 20:38:45,567 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 21:39:07] 2025-11-23 20:38:45,567 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 21:39:07] 2025-11-23 20:38:45,567 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 21:39:07] 2025-11-23 20:39:00,615 | INFO     | [monitor] cgroup control has ended
[2025-11-23 21:39:07] 2025-11-23 20:39:02,000 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139668984477504)>', '<ExcThread(monitor, started 139668460902144)>']
[2025-11-23 21:39:07] 2025-11-23 20:39:02,657 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 21:39:07] 2025-11-23 20:39:02,657 | INFO     | [monitor] control thread has ended
[2025-11-23 21:39:07] 2025-11-23 20:39:07,026 | INFO     | all workflow threads have been joined
[2025-11-23 21:39:07] 2025-11-23 20:39:07,027 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 21:39:07] 2025-11-23 20:39:07,028 | INFO     | traces error code: 0
[2025-11-23 21:39:07] 2025-11-23 20:39:07,028 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 21:39:07] 2025-11-23 20:39:07,075 [wrapper] ==== pilot stdout END ====
[2025-11-23 21:39:07] 2025-11-23 20:39:07,078 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 21:39:07] 2025-11-23 20:39:07,081 [wrapper] pilotpid: 3828024
[2025-11-23 21:39:07] 2025-11-23 20:39:07,084 [wrapper] Pilot exit status: 0
[2025-11-23 21:39:07] 2025-11-23 20:39:07,091 [wrapper] pandaids: 6895351601
[2025-11-23 21:39:07] 2025-11-23 20:39:07,107 [wrapper] cleanup supervisor_pilot 3828030 3828025
[2025-11-23 21:39:07] 2025-11-23 20:39:07,109 [wrapper] Test setup, not cleaning
[2025-11-23 21:39:07] 2025-11-23 20:39:07,112 [wrapper] apfmon messages muted
[2025-11-23 21:39:07] 2025-11-23 20:39:07,114 [wrapper] ==== wrapper stdout END ====
[2025-11-23 21:39:07] 2025-11-23 20:39:07,117 [wrapper] ==== wrapper stderr END ====
[2025-11-23 21:39:07]  *** Error codes and diagnostics ***
[2025-11-23 21:39:07]     "exeErrorCode": 65,
[2025-11-23 21:39:07]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-23 21:39:07]     "pilotErrorCode": 1305,
[2025-11-23 21:39:07]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-23 21:39:07]  *** Listing of results directory ***
[2025-11-23 21:39:07] total 405152
[2025-11-23 21:39:07] -rw-r--r-- 1 boinc boinc    576529 Nov 23 01:28 pilot3.tar.gz
[2025-11-23 21:39:07] -rwx------ 1 boinc boinc     36292 Nov 23 02:09 runpilot2-wrapper.sh
[2025-11-23 21:39:07] -rw-r--r-- 1 boinc boinc      5112 Nov 23 02:09 queuedata.json
[2025-11-23 21:39:07] -rw-r--r-- 1 boinc boinc       100 Nov 23 21:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 21:39:07] -rwxr-xr-x 1 boinc boinc      7986 Nov 23 21:34 run_atlas
[2025-11-23 21:39:07] -rw-r--r-- 1 boinc boinc       105 Nov 23 21:34 job.xml
[2025-11-23 21:39:07] -rw-r--r-- 2 boinc boinc 410686628 Nov 23 21:34 EVNT.47483658._000560.pool.root.1
[2025-11-23 21:39:07] -rw-r--r-- 2 boinc boinc    590101 Nov 23 21:34 input.tar.gz
[2025-11-23 21:39:07] -rw-r--r-- 2 boinc boinc     15847 Nov 23 21:34 start_atlas.sh
[2025-11-23 21:39:07] drwxrwx--x 2 boinc boinc      4096 Nov 23 21:34 shared
[2025-11-23 21:39:07] -rw-r--r-- 1 boinc boinc         0 Nov 23 21:34 boinc_setup_complete
[2025-11-23 21:39:07] -rw-r--r-- 1 boinc boinc      6195 Nov 23 21:34 init_data.xml
[2025-11-23 21:39:07] -rw-r--r-- 1 boinc boinc         0 Nov 23 21:34 boinc_lockfile
[2025-11-23 21:39:07] -rw-r--r-- 1 boinc boinc      2786 Nov 23 21:34 pandaJob.out
[2025-11-23 21:39:07] -rw------- 1 boinc boinc    989786 Nov 23 21:34 agis_schedconf.cvmfs.json
[2025-11-23 21:39:07] -rw------- 1 boinc boinc   1526164 Nov 23 21:35 agis_ddmendpoints.agis.ALL.json
[2025-11-23 21:39:07] drwx------ 5 boinc boinc      4096 Nov 23 21:35 pilot3
[2025-11-23 21:39:07] -rw-r--r-- 1 boinc boinc       524 Nov 23 21:35 boinc_task_state.xml
[2025-11-23 21:39:07] -rw------- 1 boinc boinc       939 Nov 23 21:36 memory_monitor_summary.json
[2025-11-23 21:39:07] -rw------- 1 boinc boinc     55684 Nov 23 21:36 log.47556137._005556.job.log.tgz.1
[2025-11-23 21:39:07] -rw------- 1 boinc boinc        95 Nov 23 21:38 pilot_heartbeat.json
[2025-11-23 21:39:07] -rw------- 1 boinc boinc      8402 Nov 23 21:38 heartbeat.json
[2025-11-23 21:39:07] -rw-r--r-- 1 boinc boinc      8192 Nov 23 21:38 boinc_mmap_file
[2025-11-23 21:39:07] -rw-r--r-- 1 boinc boinc        23 Nov 23 21:38 wrapper_checkpoint.txt
[2025-11-23 21:39:07] -rw------- 1 boinc boinc      4938 Nov 23 21:39 pilotlog.txt
[2025-11-23 21:39:07] -rw------- 1 boinc boinc     93666 Nov 23 21:39 log.47556137._005556.job.log.1
[2025-11-23 21:39:07] -rw------- 1 boinc boinc       186 Nov 23 21:39 output.list
[2025-11-23 21:39:07] -rw-r--r-- 1 boinc boinc       620 Nov 23 21:39 runtime_log
[2025-11-23 21:39:07] -rw------- 1 boinc boinc    163840 Nov 23 21:39 result.tar.gz
[2025-11-23 21:39:07] -rw-r--r-- 1 boinc boinc      8744 Nov 23 21:39 runtime_log.err
[2025-11-23 21:39:07] -rw------- 1 boinc boinc       649 Nov 23 21:39 5HYMDmamDh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmOVKKDmkixE3n.diag
[2025-11-23 21:39:07] -rw-r--r-- 1 boinc boinc      8018 Nov 23 21:39 stderr.txt
[2025-11-23 21:39:07] No HITS result produced
[2025-11-23 21:39:07]  *** Contents of shared directory: ***
[2025-11-23 21:39:07] total 401824
[2025-11-23 21:39:07] -rw-r--r-- 2 boinc boinc 410686628 Nov 23 21:34 ATLAS.root_0
[2025-11-23 21:39:07] -rw-r--r-- 2 boinc boinc    590101 Nov 23 21:34 input.tar.gz
[2025-11-23 21:39:07] -rw-r--r-- 2 boinc boinc     15847 Nov 23 21:34 start_atlas.sh
[2025-11-23 21:39:07] -rw------- 1 boinc boinc    163840 Nov 23 21:39 result.tar.gz
21:39:08 (3824292): run_atlas exited; CPU time 31.823933
21:39:08 (3824292): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN