Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-26 17:24:54 (110141): vboxwrapper version 26210
2025-11-26 17:24:54 (110141): BOINC client version: 8.0.4
2025-11-26 17:24:54 (110141): Detected: VirtualBox VboxManage Interface (Version: 7.1.12)
2025-11-26 17:24:54 (110141): Successfully copied 'init_data.xml' to the shared directory.
2025-11-26 17:24:54 (110141): Create VM. (boinc_abcceff6415b1bde, slot#0)
2025-11-26 17:24:54 (110141): Setting Memory Size for VM. (4800MB)
2025-11-26 17:24:54 (110141): Setting CPU Count for VM. (8)
2025-11-26 17:24:54 (110141): Setting Chipset Options for VM.
2025-11-26 17:24:54 (110141): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-26 17:24:54 (110141): Setting Boot Options for VM.
2025-11-26 17:24:55 (110141): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-26 17:24:55 (110141): Enabling VM Network Access.
2025-11-26 17:24:55 (110141): Disabling USB Support for VM.
2025-11-26 17:24:55 (110141): Disabling COM Port Support for VM.
2025-11-26 17:24:55 (110141): Disabling LPT Port Support for VM.
2025-11-26 17:24:55 (110141): Disabling Audio Support for VM.
2025-11-26 17:24:55 (110141): Disabling Clipboard Support for VM.
2025-11-26 17:24:55 (110141): Disabling Drag and Drop Support for VM.
2025-11-26 17:24:55 (110141): Adding storage controller(s) to VM.
2025-11-26 17:24:55 (110141): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-26 17:24:56 (110141): Adding VirtualBox Guest Additions to VM.
2025-11-26 17:24:56 (110141): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-26 17:24:56 (110141): forwarding host port 33089 to guest port 80
2025-11-26 17:24:56 (110141): Enabling remote desktop for VM.
2025-11-26 17:24:56 (110141): Enabling shared directory for VM.
2025-11-26 17:24:56 (110141): Starting VM using VBoxManage interface. (boinc_abcceff6415b1bde, slot#0)
2025-11-26 17:24:57 (110141): Successfully started VM. (PID = '110751')
2025-11-26 17:24:57 (110141): Reporting VM Process ID to BOINC.
2025-11-26 17:24:57 (110141): Guest Log: BIOS: VirtualBox 7.1.12
2025-11-26 17:24:57 (110141): Guest Log: CPUID EDX: 0x178bfbff
2025-11-26 17:24:57 (110141): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-26 17:24:57 (110141): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-26 17:24:57 (110141): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-26 17:24:57 (110141): Detected: Web Application Enabled (http://localhost:33089)
2025-11-26 17:24:57 (110141): Detected: Remote Desktop Enabled (localhost:43157)
2025-11-26 17:24:57 (110141): Preference change detected
2025-11-26 17:24:57 (110141): Setting CPU throttle for VM. (100%)
2025-11-26 17:24:57 (110141): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-26 17:24:59 (110141): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-26 17:24:59 (110141): Guest Log: BIOS: Booting from Hard Disk...
2025-11-26 17:25:02 (110141): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-26 17:25:02 (110141): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-26 17:25:02 (110141): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-26 17:25:02 (110141): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-26 17:25:02 (110141): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-26 17:25:02 (110141): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-26 17:25:02 (110141): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-26 17:25:02 (110141): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-26 17:25:02 (110141): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-26 17:25:02 (110141): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-26 17:25:02 (110141): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-26 17:25:02 (110141): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-26 17:25:02 (110141): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-26 17:25:02 (110141): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-26 17:25:02 (110141): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-26 17:25:02 (110141): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-26 17:25:02 (110141): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-26 17:25:02 (110141): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-26 17:25:02 (110141): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-26 17:25:02 (110141): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-26 17:25:02 (110141): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-26 17:25:02 (110141): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-26 17:25:02 (110141): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-26 17:25:02 (110141): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-26 17:25:02 (110141): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-26 17:25:02 (110141): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-26 17:25:02 (110141): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-26 17:25:02 (110141): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-26 17:25:02 (110141): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-26 17:25:02 (110141): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-26 17:25:02 (110141): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-26 17:25:02 (110141): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-26 17:25:11 (110141): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-26 17:25:11 (110141): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-26 17:25:18 (110141): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-26 17:25:18 (110141): Guest Log: 00:00:00.000334 main     Log opened 2025-11-26T08:25:16.522342000Z
2025-11-26 17:25:18 (110141): Guest Log: 00:00:00.000531 main     OS Product: Linux
2025-11-26 17:25:18 (110141): Guest Log: 00:00:00.000601 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-26 17:25:18 (110141): Guest Log: 00:00:00.000682 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-26 17:25:18 (110141): Guest Log: 00:00:00.000742 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-26 17:25:18 (110141): Guest Log: 00:00:00.000743 main     Process ID: 1380
2025-11-26 17:25:18 (110141): Guest Log: 00:00:00.000745 main     Package type: LINUX_64BITS_GENERIC
2025-11-26 17:25:18 (110141): Guest Log: 00:00:00.003225 main     5.2.32 r132073 started. Verbose level = 0
2025-11-26 17:25:18 (110141): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-26 17:25:18 (110141): Guest Log: [INFO] Mounting shared directory
2025-11-26 17:25:18 (110141): Guest Log: [INFO] Checking for init_data.xml
2025-11-26 17:26:32 (110141): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-26 17:26:32 (110141): Guest Log: [INFO] Detected branch: prod
2025-11-26 17:26:33 (110141): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-26 17:26:33 (110141): Guest Log: Copying input files
2025-11-26 17:26:35 (110141): Guest Log: Copied input files into RunAtlas.
2025-11-26 17:26:35 (110141): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-26 17:26:35 (110141): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-26 17:26:35 (110141): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-26 17:26:35 (110141): Guest Log: Further information can be found at the LHC@home message board.
2025-11-26 17:26:50 (110141): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-26 17:26:51 (110141): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-26 17:26:51 (110141): Guest Log: 2.6.3.0 1685 0 32208 153315 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-11-26 17:26:53 (110141): Guest Log: copied the webapp to /var/www
2025-11-26 17:26:53 (110141): Guest Log: ATHENA_PROC_NUMBER=8
2025-11-26 17:26:53 (110141): Guest Log: ATHENA_CORE_NUMBER=8
2025-11-26 17:26:53 (110141): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-26 17:26:53 (110141): Guest Log:  *** Starting ATLAS job. (PandaID=6895340364 taskID=47556137) ***
2025-11-26 19:03:58 (110141): Status Report: Elapsed Time: '6000.000000'
2025-11-26 19:03:58 (110141): Status Report: CPU Time: '35795.640000'
2025-11-26 20:42:59 (110141): Status Report: Elapsed Time: '12000.000000'
2025-11-26 20:42:59 (110141): Status Report: CPU Time: '81241.250000'
2025-11-26 22:21:59 (110141): Status Report: Elapsed Time: '18000.000000'
2025-11-26 22:21:59 (110141): Status Report: CPU Time: '128007.640000'
2025-11-27 00:01:00 (110141): Status Report: Elapsed Time: '24000.000000'
2025-11-27 00:01:00 (110141): Status Report: CPU Time: '174796.430000'
2025-11-27 01:40:01 (110141): Status Report: Elapsed Time: '30000.000000'
2025-11-27 01:40:01 (110141): Status Report: CPU Time: '215483.250000'
2025-11-27 03:19:02 (110141): Status Report: Elapsed Time: '36000.000000'
2025-11-27 03:19:02 (110141): Status Report: CPU Time: '259809.050000'
2025-11-27 04:58:03 (110141): Status Report: Elapsed Time: '42000.000000'
2025-11-27 04:58:03 (110141): Status Report: CPU Time: '306988.660000'
2025-11-27 06:37:03 (110141): Status Report: Elapsed Time: '48000.000000'
2025-11-27 06:37:03 (110141): Status Report: CPU Time: '354159.840000'
2025-11-27 08:16:04 (110141): Status Report: Elapsed Time: '54000.000000'
2025-11-27 08:16:04 (110141): Status Report: CPU Time: '401354.960000'
2025-11-27 09:55:05 (110141): Status Report: Elapsed Time: '60000.000000'
2025-11-27 09:55:05 (110141): Status Report: CPU Time: '448554.960000'
2025-11-27 11:34:05 (110141): Status Report: Elapsed Time: '66000.000000'
2025-11-27 11:34:05 (110141): Status Report: CPU Time: '495655.590000'
2025-11-27 13:13:06 (110141): Status Report: Elapsed Time: '72000.000000'
2025-11-27 13:13:06 (110141): Status Report: CPU Time: '538021.200000'
2025-11-27 13:18:14 (110141): Guest Log:  *** Job finished ***
2025-11-27 13:18:14 (110141): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-27 13:18:14 (110141): Guest Log: 2025-11-27 04:18:08,926 | INFO     | all workflow threads have been joined
2025-11-27 13:18:14 (110141): Guest Log: 2025-11-27 04:18:08,927 | INFO     | end of generic workflow (traces error code: 0)
2025-11-27 13:18:14 (110141): Guest Log: 2025-11-27 04:18:08,927 | INFO     | traces error code: 0
2025-11-27 13:18:14 (110141): Guest Log: 2025-11-27 04:18:08,927 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-27 13:18:14 (110141): Guest Log: 2025-11-27 04:18:12,950 | INFO     | PID=6145 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-11-27 13:18:14 (110141): Guest Log: 2025-11-27 04:18:12,951 | INFO     | found 0 job(s) in 20 queues
2025-11-27 13:18:14 (110141): Guest Log: 2025-11-27 04:18:12,951 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-27 13:18:14 (110141): Guest Log: 2025-11-27 04:18:12,952 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-27 13:18:14 (110141): Guest Log: 2025-11-27 04:18:12,952 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-27 13:18:14 (110141): Guest Log: 2025-11-27 04:18:12,952 | INFO     | [monitor] control thread has ended
2025-11-27 13:18:14 (110141): Guest Log: 2025-11-27 04:18:13,094 [wrapper] ==== pilot stdout END ====
2025-11-27 13:18:14 (110141): Guest Log: 2025-11-27 04:18:13,108 [wrapper] ==== wrapper stdout RESUME ====
2025-11-27 13:18:14 (110141): Guest Log: 2025-11-27 04:18:13,121 [wrapper] pilotpid: 6145
2025-11-27 13:18:14 (110141): Guest Log: 2025-11-27 04:18:13,134 [wrapper] Pilot exit status: 0
2025-11-27 13:18:14 (110141): Guest Log: 2025-11-27 04:18:13,176 [wrapper] pandaids: 6895340364
2025-11-27 13:18:14 (110141): Guest Log: 2025-11-27 04:18:13,266 [wrapper] cleanup supervisor_pilot  4237 6146
2025-11-27 13:18:14 (110141): Guest Log: 2025-11-27 04:18:13,279 [wrapper] Test setup, not cleaning
2025-11-27 13:18:14 (110141): Guest Log: 2025-11-27 04:18:13,291 [wrapper] apfmon messages muted
2025-11-27 13:18:14 (110141): Guest Log: 2025-11-27 04:18:13,304 [wrapper] ==== wrapper stdout END ====
2025-11-27 13:18:14 (110141): Guest Log: 2025-11-27 04:18:13,316 [wrapper] ==== wrapper stderr END ====
2025-11-27 13:18:14 (110141): Guest Log:  *** Error codes and diagnostics ***
2025-11-27 13:18:14 (110141): Guest Log:     "exeErrorCode": 0,
2025-11-27 13:18:14 (110141): Guest Log:     "exeErrorDiag": "",
2025-11-27 13:18:14 (110141): Guest Log:     "pilotErrorCode": 0,
2025-11-27 13:18:14 (110141): Guest Log:     "pilotErrorDiag": "",
2025-11-27 13:18:14 (110141): Guest Log:  *** Listing of results directory ***
2025-11-27 13:18:14 (110141): Guest Log: total 928588
2025-11-27 13:18:14 (110141): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 22 12:54 pilot3.tar.gz
2025-11-27 13:18:14 (110141): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 22 13:12 runpilot2-wrapper.sh
2025-11-27 13:18:14 (110141): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 22 13:12 queuedata.json
2025-11-27 13:18:14 (110141): Guest Log: -rw-r--r--. 1 atlas atlas    590100 Nov 26 08:26 input.tar.gz
2025-11-27 13:18:14 (110141): Guest Log: -rw-r--r--. 1 atlas atlas      6456 Nov 26 08:26 init_data.xml
2025-11-27 13:18:14 (110141): Guest Log: -rw-r--r--. 1 atlas atlas     15847 Nov 26 08:26 start_atlas.sh
2025-11-27 13:18:14 (110141): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 26 08:26 EVNT.47483658._000382.pool.root.1 -> /data/./ATLAS.root_0
2025-11-27 13:18:14 (110141): Guest Log: -rw-r--r--. 1 atlas atlas      2785 Nov 26 08:26 pandaJob.out
2025-11-27 13:18:14 (110141): Guest Log: -rw-------. 1 atlas atlas    991877 Nov 26 08:29 agis_schedconf.cvmfs.json
2025-11-27 13:18:14 (110141): Guest Log: drwx------. 5 atlas atlas      4096 Nov 26 08:29 pilot3
2025-11-27 13:18:14 (110141): Guest Log: -rw-------. 1 atlas atlas 924312279 Nov 27 04:16 HITS.47556137._003779.pool.root.1
2025-11-27 13:18:14 (110141): Guest Log: -rw-------. 1 atlas atlas      1058 Nov 27 04:16 memory_monitor_summary.json
2025-11-27 13:18:14 (110141): Guest Log: -rw-------. 1 atlas atlas   1516240 Nov 27 04:16 agis_ddmendpoints.agis.ALL.json
2025-11-27 13:18:14 (110141): Guest Log: -rw-------. 1 atlas atlas   2291532 Nov 27 04:16 log.47556137._003779.job.log.tgz.1
2025-11-27 13:18:14 (110141): Guest Log: -rw-------. 1 atlas atlas      8650 Nov 27 04:17 heartbeat.json
2025-11-27 13:18:14 (110141): Guest Log: -rw-------. 1 atlas atlas        95 Nov 27 04:18 pilot_heartbeat.json
2025-11-27 13:18:14 (110141): Guest Log: -rw-------. 1 atlas atlas       744 Nov 27 04:18 pilotlog.txt
2025-11-27 13:18:14 (110141): Guest Log: -rw-------. 1 atlas atlas   9069727 Nov 27 04:18 log.47556137._003779.job.log.1
2025-11-27 13:18:14 (110141): Guest Log: -rw-------. 1 atlas atlas       353 Nov 27 04:18 output.list
2025-11-27 13:18:14 (110141): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 27 04:18 runtime_log
2025-11-27 13:18:14 (110141): Guest Log: -rw-------. 1 atlas atlas  11376640 Nov 27 04:18 result.tar.gz
2025-11-27 13:18:14 (110141): Guest Log: -rw-r--r--. 1 atlas atlas      8761 Nov 27 04:18 runtime_log.err
2025-11-27 13:18:14 (110141): Guest Log: -rw-------. 1 atlas atlas       671 Nov 27 04:18 rSUKDmda2g8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmEBKKDmPhIGFm.diag
2025-11-27 13:18:14 (110141): Guest Log: Looking for outputfile HITS.47556137._003779.pool.root.1
2025-11-27 13:18:14 (110141): Guest Log: HITS file was successfully produced
2025-11-27 13:18:14 (110141): Guest Log: -rw-------. 1 atlas atlas 924312279 Nov 27 04:16 /home/atlas/RunAtlas/HITS.47556137._003779.pool.root.1
2025-11-27 13:18:15 (110141): Guest Log: Successfully finished the ATLAS job!
2025-11-27 13:18:15 (110141): Guest Log: Copying the results back to the shared directory!
2025-11-27 13:18:15 (110141): Guest Log:  *** Contents of shared directory: ***
2025-11-27 13:18:15 (110141): Guest Log: total 413216
2025-11-27 13:18:15 (110141): Guest Log: -rw-r--r--. 1 root root 411129489 Nov 26 08:24 ATLAS.root_0
2025-11-27 13:18:15 (110141): Guest Log: -rw-rw-r--. 1 root root      6456 Nov 26 08:24 init_data.xml
2025-11-27 13:18:15 (110141): Guest Log: -rw-r--r--. 1 root root    590100 Nov 26 08:24 input.tar.gz
2025-11-27 13:18:15 (110141): Guest Log: -rw-r--r--. 1 root root  11376640 Nov 27 04:18 result.tar.gz
2025-11-27 13:18:15 (110141): Guest Log: -rw-r--r--. 1 root root     15847 Nov 26 08:24 start_atlas.sh
2025-11-27 13:18:15 (110141): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-27 13:18:15 (110141): VM Completion File Detected.
2025-11-27 13:18:15 (110141): Powering off VM.
2025-11-27 13:18:15 (110141): Successfully stopped VM.
2025-11-27 13:18:15 (110141): Deregistering VM. (boinc_abcceff6415b1bde, slot#0)
2025-11-27 13:18:16 (110141): Removing network bandwidth throttle group from VM.
2025-11-27 13:18:16 (110141): Removing VM from VirtualBox.
2025-11-27 13:18:21 (110141): called boinc_finish(0)

</stderr_txt>
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