Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:25:04 (1238694): wrapper (7.7.26015): starting
07:25:04 (1238694): wrapper: running run_atlas (--nthreads 3)
[2025-11-26 07:25:04] Arguments: --nthreads 3
[2025-11-26 07:25:04] Threads: 3
[2025-11-26 07:25:04] Checking for CVMFS
[2025-11-26 07:25:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 07:25:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 07:25:04] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 07:25:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 07:25:04] 2.9.2.0 3973621 10950 90824 153312 1 81 35216566 36864001 0 130560 0 4066860 99.862 658437 8641 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 07:25:04] CVMFS is ok
[2025-11-26 07:25:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 07:25:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 07:25:04] Further information can be found at the LHC@home message board.
[2025-11-26 07:25:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 07:25:04] Checking for apptainer binary...
[2025-11-26 07:25:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 07:25:04] Running /usr/bin/apptainer --version
[2025-11-26 07:25:04] apptainer version 1.4.1-1.1
[2025-11-26 07:25:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 07:25:04] magicA246
[2025-11-26 07:25:04] apptainer works
[2025-11-26 07:25:04] Set ATHENA_PROC_NUMBER=3
[2025-11-26 07:25:04] Set ATHENA_CORE_NUMBER=3
[2025-11-26 07:25:04] Starting ATLAS job with PandaID=6895339635
[2025-11-26 07:25:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 15:23:54]  *** The last 200 lines of the pilot log: ***
[2025-11-26 15:23:54] 2025-11-26 14:23:15,585 | INFO     | architecture information:
[2025-11-26 15:23:54] 2025-11-26 14:23:15,585 | INFO     | executing command: cat /etc/os-release
[2025-11-26 15:23:54] 2025-11-26 14:23:15,594 | INFO     | cat /etc/os-release:
[2025-11-26 15:23:54] NAME="CentOS Linux"
[2025-11-26 15:23:54] VERSION="7 (Core)"
[2025-11-26 15:23:54] ID="centos"
[2025-11-26 15:23:54] ID_LIKE="rhel fedora"
[2025-11-26 15:23:54] VERSION_ID="7"
[2025-11-26 15:23:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 15:23:54] ANSI_COLOR="0;31"
[2025-11-26 15:23:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 15:23:54] HOME_URL="https://www.centos.org/"
[2025-11-26 15:23:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 15:23:54] 
[2025-11-26 15:23:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 15:23:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 15:23:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 15:23:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 15:23:54] 
[2025-11-26 15:23:54] 2025-11-26 14:23:15,594 | INFO     | ***************************************
[2025-11-26 15:23:54] 2025-11-26 14:23:16,098 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-26 15:23:54] 2025-11-26 14:23:16,111 | INFO     | sufficient remaining disk space (366309539840 B)
[2025-11-26 15:23:54] 2025-11-26 14:23:16,111 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 15:23:54] 2025-11-26 14:23:16,111 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 15:23:54] 2025-11-26 14:23:16,112 | INFO     | update_server=False
[2025-11-26 15:23:54] 2025-11-26 14:23:16,112 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 15:23:54] 2025-11-26 14:23:16,112 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 15:23:54] 2025-11-26 14:23:16,112 | INFO     | aborting loop
[2025-11-26 15:23:54] 2025-11-26 14:23:16,112 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 15:23:54] 2025-11-26 14:23:16,112 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 15:23:54] 2025-11-26 14:23:16,250 | INFO     | all payload control threads have been joined
[2025-11-26 15:23:54] 2025-11-26 14:23:16,582 | INFO     | all data control threads have been joined
[2025-11-26 15:23:54] 2025-11-26 14:23:16,628 | INFO     | all job control threads have been joined
[2025-11-26 15:23:54] 2025-11-26 14:23:17,113 | INFO     | [job] retrieve thread has finished
[2025-11-26 15:23:54] 2025-11-26 14:23:17,113 | INFO     | [job] queue monitor thread has finished
[2025-11-26 15:23:54] 2025-11-26 14:23:17,114 | INFO     | [job] job monitor thread has finished
[2025-11-26 15:23:54] 2025-11-26 14:23:17,159 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 15:23:54] 2025-11-26 14:23:17,256 | INFO     | [payload] control thread has finished
[2025-11-26 15:23:54] 2025-11-26 14:23:17,349 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 15:23:54] 2025-11-26 14:23:17,588 | INFO     | [data] control thread has finished
[2025-11-26 15:23:54] 2025-11-26 14:23:17,633 | INFO     | [job] control thread has finished
[2025-11-26 15:23:54] 2025-11-26 14:23:17,783 | INFO     | [payload] validate_post thread has finished
[2025-11-26 15:23:54] 2025-11-26 14:23:18,118 | INFO     | [data] copytool_out thread has finished
[2025-11-26 15:23:54] 2025-11-26 14:23:18,200 | INFO     | [payload] failed_post thread has finished
[2025-11-26 15:23:54] 2025-11-26 14:23:18,303 | INFO     | [job] validate thread has finished
[2025-11-26 15:23:54] 2025-11-26 14:23:18,303 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 15:23:54] 2025-11-26 14:23:18,308 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 15:23:54] 2025-11-26 14:23:18,317 | INFO     | [data] copytool_in thread has finished
[2025-11-26 15:23:54] 2025-11-26 14:23:18,458 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 15:23:54] 2025-11-26 14:23:22,315 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 15:23:54] 2025-11-26 14:23:45,745 | INFO     | PID=1242416 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 15:23:54] 2025-11-26 14:23:45,745 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 15:23:54] 2025-11-26 14:23:45,745 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 15:23:54] 2025-11-26 14:23:45,745 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 15:23:54] 2025-11-26 14:23:47,523 | INFO     | [monitor] cgroup control has ended
[2025-11-26 15:23:54] 2025-11-26 14:23:49,385 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139952635721536)>', '<ExcThread(monitor, started 139951710664448)>']
[2025-11-26 15:23:54] 2025-11-26 14:23:49,767 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 15:23:54] 2025-11-26 14:23:49,767 | INFO     | [monitor] control thread has ended
[2025-11-26 15:23:54] 2025-11-26 14:23:54,409 | INFO     | all workflow threads have been joined
[2025-11-26 15:23:54] 2025-11-26 14:23:54,409 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 15:23:54] 2025-11-26 14:23:54,410 | INFO     | traces error code: 0
[2025-11-26 15:23:54] 2025-11-26 14:23:54,410 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 15:23:54] 2025-11-26 14:23:54,463 [wrapper] ==== pilot stdout END ====
[2025-11-26 15:23:54] 2025-11-26 14:23:54,466 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 15:23:54] 2025-11-26 14:23:54,468 [wrapper] pilotpid: 1242416
[2025-11-26 15:23:54] 2025-11-26 14:23:54,471 [wrapper] Pilot exit status: 0
[2025-11-26 15:23:54] 2025-11-26 14:23:54,479 [wrapper] pandaids: 6895339635
[2025-11-26 15:23:54] 2025-11-26 14:23:54,497 [wrapper] cleanup supervisor_pilot 1298977 1242417
[2025-11-26 15:23:54] 2025-11-26 14:23:54,499 [wrapper] Test setup, not cleaning
[2025-11-26 15:23:54] 2025-11-26 14:23:54,502 [wrapper] apfmon messages muted
[2025-11-26 15:23:54] 2025-11-26 14:23:54,504 [wrapper] ==== wrapper stdout END ====
[2025-11-26 15:23:54] 2025-11-26 14:23:54,506 [wrapper] ==== wrapper stderr END ====
[2025-11-26 15:23:54]  *** Error codes and diagnostics ***
[2025-11-26 15:23:54]     "exeErrorCode": 0,
[2025-11-26 15:23:54]     "exeErrorDiag": "",
[2025-11-26 15:23:54]     "pilotErrorCode": 0,
[2025-11-26 15:23:54]     "pilotErrorDiag": "",
[2025-11-26 15:23:54]  *** Listing of results directory ***
[2025-11-26 15:23:54] total 1306228
[2025-11-26 15:23:54] -rwx------ 1 boinc boinc     36292 Nov 22 11:57 runpilot2-wrapper.sh
[2025-11-26 15:23:54] -rw-r--r-- 1 boinc boinc      5112 Nov 22 11:57 queuedata.json
[2025-11-26 15:23:54] -rw-r--r-- 1 boinc boinc    576529 Nov 22 11:57 pilot3.tar.gz
[2025-11-26 15:23:54] -rw-r--r-- 1 boinc boinc       100 Nov 26 07:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 15:23:54] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 07:25 run_atlas
[2025-11-26 15:23:54] -rw-r--r-- 1 boinc boinc       105 Nov 26 07:25 job.xml
[2025-11-26 15:23:54] -rw-r--r-- 2 boinc boinc 408365754 Nov 26 07:25 EVNT.47483658._000353.pool.root.1
[2025-11-26 15:23:54] -rw-r--r-- 2 boinc boinc    590090 Nov 26 07:25 input.tar.gz
[2025-11-26 15:23:54] -rw-r--r-- 2 boinc boinc     15847 Nov 26 07:25 start_atlas.sh
[2025-11-26 15:23:54] drwxrwx--x 2 boinc boinc      4096 Nov 26 07:25 shared
[2025-11-26 15:23:54] -rw-r--r-- 1 boinc boinc         0 Nov 26 07:25 boinc_setup_complete
[2025-11-26 15:23:54] -rw-r--r-- 1 boinc boinc      6449 Nov 26 07:25 init_data.xml
[2025-11-26 15:23:54] -rw-r--r-- 1 boinc boinc         0 Nov 26 07:25 boinc_lockfile
[2025-11-26 15:23:54] -rw-r--r-- 1 boinc boinc      2785 Nov 26 07:25 pandaJob.out
[2025-11-26 15:23:54] -rw------- 1 boinc boinc    991877 Nov 26 07:25 agis_schedconf.cvmfs.json
[2025-11-26 15:23:54] drwx------ 5 boinc boinc      4096 Nov 26 07:25 pilot3
[2025-11-26 15:23:54] -rw-r--r-- 1 boinc boinc       531 Nov 26 15:19 boinc_task_state.xml
[2025-11-26 15:23:54] -rw------- 1 boinc boinc 914883195 Nov 26 15:22 HITS.47556137._003492.pool.root.1
[2025-11-26 15:23:54] -rw------- 1 boinc boinc      1021 Nov 26 15:23 memory_monitor_summary.json
[2025-11-26 15:23:54] -rw------- 1 boinc boinc   1516240 Nov 26 15:23 agis_ddmendpoints.agis.ALL.json
[2025-11-26 15:23:54] -rw------- 1 boinc boinc   1170853 Nov 26 15:23 log.47556137._003492.job.log.tgz.1
[2025-11-26 15:23:54] -rw------- 1 boinc boinc      8573 Nov 26 15:23 heartbeat.json
[2025-11-26 15:23:54] -rw-r--r-- 1 boinc boinc      8192 Nov 26 15:23 boinc_mmap_file
[2025-11-26 15:23:54] -rw-r--r-- 1 boinc boinc        28 Nov 26 15:23 wrapper_checkpoint.txt
[2025-11-26 15:23:54] -rw------- 1 boinc boinc        95 Nov 26 15:23 pilot_heartbeat.json
[2025-11-26 15:23:54] -rw------- 1 boinc boinc      4752 Nov 26 15:23 pilotlog.txt
[2025-11-26 15:23:54] -rw------- 1 boinc boinc   4040224 Nov 26 15:23 log.47556137._003492.job.log.1
[2025-11-26 15:23:54] -rw------- 1 boinc boinc       353 Nov 26 15:23 output.list
[2025-11-26 15:23:54] -rw-r--r-- 1 boinc boinc       620 Nov 26 15:23 runtime_log
[2025-11-26 15:23:54] -rw------- 1 boinc boinc   5232640 Nov 26 15:23 result.tar.gz
[2025-11-26 15:23:54] -rw-r--r-- 1 boinc boinc      8913 Nov 26 15:23 runtime_log.err
[2025-11-26 15:23:54] -rw------- 1 boinc boinc       668 Nov 26 15:23 fZCMDmWU0g8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm84HKDm5YGFgn.diag
[2025-11-26 15:23:54] -rw-r--r-- 1 boinc boinc      8974 Nov 26 15:23 stderr.txt
[2025-11-26 15:23:54] HITS file was successfully produced:
[2025-11-26 15:23:54] -rw------- 1 boinc boinc 914883195 Nov 26 15:22 shared/HITS.pool.root.1
[2025-11-26 15:23:54]  *** Contents of shared directory: ***
[2025-11-26 15:23:54] total 1297952
[2025-11-26 15:23:54] -rw-r--r-- 2 boinc boinc 408365754 Nov 26 07:25 ATLAS.root_0
[2025-11-26 15:23:54] -rw-r--r-- 2 boinc boinc    590090 Nov 26 07:25 input.tar.gz
[2025-11-26 15:23:54] -rw-r--r-- 2 boinc boinc     15847 Nov 26 07:25 start_atlas.sh
[2025-11-26 15:23:54] -rw------- 1 boinc boinc 914883195 Nov 26 15:22 HITS.pool.root.1
[2025-11-26 15:23:54] -rw------- 1 boinc boinc   5232640 Nov 26 15:23 result.tar.gz
15:23:55 (1238694): run_atlas exited; CPU time 84620.531278
15:23:55 (1238694): called boinc_finish(0)

</stderr_txt>
]]>

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