Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:48:12 (2822950): wrapper (7.7.26015): starting
00:48:12 (2822950): wrapper: running run_atlas (--nthreads 4)
[2025-11-26 00:48:12] Arguments: --nthreads 4
[2025-11-26 00:48:12] Threads: 4
[2025-11-26 00:48:12] Checking for CVMFS
[2025-11-26 00:48:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:48:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:48:12] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:48:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:48:12] 2.9.2.0 1281416 10308 104824 153302 1 81 32966627 36864001 0 130560 1 4344255 99.871 636154 1099 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 00:48:12] CVMFS is ok
[2025-11-26 00:48:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:48:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:48:12] Further information can be found at the LHC@home message board.
[2025-11-26 00:48:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:48:12] Checking for apptainer binary...
[2025-11-26 00:48:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:48:12] Running /usr/bin/apptainer --version
[2025-11-26 00:48:12] apptainer version 1.4.1-1.1
[2025-11-26 00:48:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:48:12] magicA244a
[2025-11-26 00:48:12] apptainer works
[2025-11-26 00:48:12] Set ATHENA_PROC_NUMBER=4
[2025-11-26 00:48:12] Set ATHENA_CORE_NUMBER=4
[2025-11-26 00:48:12] Starting ATLAS job with PandaID=6895351752
[2025-11-26 00:48:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 06:50:51]  *** The last 200 lines of the pilot log: ***
[2025-11-26 06:50:51] 2025-11-26 05:49:54,042 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 06:50:51] 2025-11-26 05:49:54,042 | INFO     | collected zombie processes
[2025-11-26 06:50:51] 2025-11-26 05:49:54,042 | INFO     | will attempt to kill all subprocesses of pid=2833360
[2025-11-26 06:50:51] 2025-11-26 05:49:54,086 | INFO     | process IDs to be killed: [2833360] (in reverse order)
[2025-11-26 06:50:51] 2025-11-26 05:49:54,113 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 06:50:51] 2025-11-26 05:49:54,113 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 06:50:51] 2025-11-26 05:49:54,114 | INFO     | did not find any defunct processes belonging to 2833360
[2025-11-26 06:50:51] 2025-11-26 05:49:54,116 | INFO     | did not find any defunct processes belonging to 2833360
[2025-11-26 06:50:51] 2025-11-26 05:49:54,116 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 06:50:51] 2025-11-26 05:49:54,116 | INFO     | ready for new job
[2025-11-26 06:50:51] 2025-11-26 05:49:54,116 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 06:50:51] 2025-11-26 05:49:54,117 | INFO     | ***************************************
[2025-11-26 06:50:51] 2025-11-26 05:49:54,117 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 06:50:51] 2025-11-26 05:49:54,117 | INFO     | ***************************************
[2025-11-26 06:50:51] 2025-11-26 05:49:54,117 | INFO     | 
[2025-11-26 06:50:51] 2025-11-26 05:49:54,118 | INFO     | architecture information:
[2025-11-26 06:50:51] 2025-11-26 05:49:54,118 | INFO     | executing command: cat /etc/os-release
[2025-11-26 06:50:51] 2025-11-26 05:49:54,128 | INFO     | cat /etc/os-release:
[2025-11-26 06:50:51] NAME="CentOS Linux"
[2025-11-26 06:50:51] VERSION="7 (Core)"
[2025-11-26 06:50:51] ID="centos"
[2025-11-26 06:50:51] ID_LIKE="rhel fedora"
[2025-11-26 06:50:51] VERSION_ID="7"
[2025-11-26 06:50:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 06:50:51] ANSI_COLOR="0;31"
[2025-11-26 06:50:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 06:50:51] HOME_URL="https://www.centos.org/"
[2025-11-26 06:50:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 06:50:51] 
[2025-11-26 06:50:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 06:50:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 06:50:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 06:50:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 06:50:51] 
[2025-11-26 06:50:51] 2025-11-26 05:49:54,128 | INFO     | ***************************************
[2025-11-26 06:50:51] 2025-11-26 05:49:54,631 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-26 06:50:51] 2025-11-26 05:49:54,645 | INFO     | sufficient remaining disk space (323237183488 B)
[2025-11-26 06:50:51] 2025-11-26 05:49:54,645 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 06:50:51] 2025-11-26 05:49:54,645 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 06:50:51] 2025-11-26 05:49:54,645 | INFO     | update_server=False
[2025-11-26 06:50:51] 2025-11-26 05:49:54,645 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 06:50:51] 2025-11-26 05:49:54,645 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 06:50:51] 2025-11-26 05:49:54,646 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 06:50:51] 2025-11-26 05:49:54,646 | INFO     | aborting loop
[2025-11-26 06:50:51] 2025-11-26 05:49:54,836 | INFO     | all data control threads have been joined
[2025-11-26 06:50:51] 2025-11-26 05:49:54,853 | INFO     | all payload control threads have been joined
[2025-11-26 06:50:51] 2025-11-26 05:49:55,276 | INFO     | all job control threads have been joined
[2025-11-26 06:50:51] 2025-11-26 05:49:55,384 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 06:50:51] 2025-11-26 05:49:55,651 | INFO     | [job] queue monitor thread has finished
[2025-11-26 06:50:51] 2025-11-26 05:49:55,651 | INFO     | [job] retrieve thread has finished
[2025-11-26 06:50:51] 2025-11-26 05:49:55,651 | INFO     | [job] job monitor thread has finished
[2025-11-26 06:50:51] 2025-11-26 05:49:55,842 | INFO     | [data] control thread has finished
[2025-11-26 06:50:51] 2025-11-26 05:49:55,854 | INFO     | [payload] control thread has finished
[2025-11-26 06:50:51] 2025-11-26 05:49:55,916 | INFO     | [payload] validate_post thread has finished
[2025-11-26 06:50:51] 2025-11-26 05:49:56,282 | INFO     | [job] control thread has finished
[2025-11-26 06:50:51] 2025-11-26 05:49:56,356 | INFO     | [job] validate thread has finished
[2025-11-26 06:50:51] 2025-11-26 05:49:56,357 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 06:50:51] 2025-11-26 05:49:56,400 | INFO     | [data] copytool_in thread has finished
[2025-11-26 06:50:51] 2025-11-26 05:49:56,488 | INFO     | [payload] failed_post thread has finished
[2025-11-26 06:50:51] 2025-11-26 05:49:56,610 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 06:50:51] 2025-11-26 05:49:56,687 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 06:50:51] 2025-11-26 05:49:57,390 | INFO     | [data] copytool_out thread has finished
[2025-11-26 06:50:51] 2025-11-26 05:49:57,963 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 06:50:51] 2025-11-26 05:50:01,970 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 06:50:51] 2025-11-26 05:50:04,968 | INFO     | job.realtimelogging is not enabled
[2025-11-26 06:50:51] 2025-11-26 05:50:05,974 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 06:50:51] 2025-11-26 05:50:24,772 | INFO     | PID=2826747 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 06:50:51] 2025-11-26 05:50:24,773 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 06:50:51] 2025-11-26 05:50:24,773 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 06:50:51] 2025-11-26 05:50:24,773 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 06:50:51] 2025-11-26 05:50:45,080 | INFO     | [monitor] cgroup control has ended
[2025-11-26 06:50:51] 2025-11-26 05:50:46,377 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140346962192192)>', '<ExcThread(monitor, started 140345505478400)>']
[2025-11-26 06:50:51] 2025-11-26 05:50:46,889 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 06:50:51] 2025-11-26 05:50:46,889 | INFO     | [monitor] control thread has ended
[2025-11-26 06:50:51] 2025-11-26 05:50:51,400 | INFO     | all workflow threads have been joined
[2025-11-26 06:50:51] 2025-11-26 05:50:51,400 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 06:50:51] 2025-11-26 05:50:51,401 | INFO     | traces error code: 0
[2025-11-26 06:50:51] 2025-11-26 05:50:51,401 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 06:50:51] 2025-11-26 05:50:51,456 [wrapper] ==== pilot stdout END ====
[2025-11-26 06:50:51] 2025-11-26 05:50:51,458 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 06:50:51] 2025-11-26 05:50:51,461 [wrapper] pilotpid: 2826747
[2025-11-26 06:50:51] 2025-11-26 05:50:51,464 [wrapper] Pilot exit status: 0
[2025-11-26 06:50:51] 2025-11-26 05:50:51,471 [wrapper] pandaids: 6895351752
[2025-11-26 06:50:51] 2025-11-26 05:50:51,490 [wrapper] cleanup supervisor_pilot 2872624 2826748
[2025-11-26 06:50:51] 2025-11-26 05:50:51,493 [wrapper] Test setup, not cleaning
[2025-11-26 06:50:51] 2025-11-26 05:50:51,496 [wrapper] apfmon messages muted
[2025-11-26 06:50:51] 2025-11-26 05:50:51,498 [wrapper] ==== wrapper stdout END ====
[2025-11-26 06:50:51] 2025-11-26 05:50:51,501 [wrapper] ==== wrapper stderr END ====
[2025-11-26 06:50:51]  *** Error codes and diagnostics ***
[2025-11-26 06:50:51]     "exeErrorCode": 0,
[2025-11-26 06:50:51]     "exeErrorDiag": "",
[2025-11-26 06:50:51]     "pilotErrorCode": 0,
[2025-11-26 06:50:51]     "pilotErrorDiag": "",
[2025-11-26 06:50:51]  *** Listing of results directory ***
[2025-11-26 06:50:51] total 1316928
[2025-11-26 06:50:51] -rwx------ 1 boinc boinc     36292 Nov 23 02:11 runpilot2-wrapper.sh
[2025-11-26 06:50:51] -rw-r--r-- 1 boinc boinc      5112 Nov 23 02:11 queuedata.json
[2025-11-26 06:50:51] -rw-r--r-- 1 boinc boinc    576529 Nov 23 02:11 pilot3.tar.gz
[2025-11-26 06:50:51] -rw-r--r-- 1 boinc boinc       100 Nov 26 00:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 06:50:51] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 00:48 run_atlas
[2025-11-26 06:50:51] -rw-r--r-- 1 boinc boinc       105 Nov 26 00:48 job.xml
[2025-11-26 06:50:51] -rw-r--r-- 2 boinc boinc 409781839 Nov 26 00:48 EVNT.47483658._000563.pool.root.1
[2025-11-26 06:50:51] -rw-r--r-- 2 boinc boinc    590093 Nov 26 00:48 input.tar.gz
[2025-11-26 06:50:51] -rw-r--r-- 2 boinc boinc     15847 Nov 26 00:48 start_atlas.sh
[2025-11-26 06:50:51] drwxrwx--x 2 boinc boinc      4096 Nov 26 00:48 shared
[2025-11-26 06:50:51] -rw-r--r-- 1 boinc boinc         0 Nov 26 00:48 boinc_setup_complete
[2025-11-26 06:50:51] -rw-r--r-- 1 boinc boinc      6439 Nov 26 00:48 init_data.xml
[2025-11-26 06:50:51] -rw-r--r-- 1 boinc boinc         0 Nov 26 00:48 boinc_lockfile
[2025-11-26 06:50:51] -rw-r--r-- 1 boinc boinc      2786 Nov 26 00:48 pandaJob.out
[2025-11-26 06:50:51] -rw------- 1 boinc boinc    991877 Nov 26 00:48 agis_schedconf.cvmfs.json
[2025-11-26 06:50:51] drwx------ 5 boinc boinc      4096 Nov 26 00:48 pilot3
[2025-11-26 06:50:51] -rw-r--r-- 1 boinc boinc       531 Nov 26 06:46 boinc_task_state.xml
[2025-11-26 06:50:51] -rw------- 1 boinc boinc 926283502 Nov 26 06:49 HITS.47556137._005582.pool.root.1
[2025-11-26 06:50:51] -rw------- 1 boinc boinc      1024 Nov 26 06:49 memory_monitor_summary.json
[2025-11-26 06:50:51] -rw------- 1 boinc boinc   1516240 Nov 26 06:49 agis_ddmendpoints.agis.ALL.json
[2025-11-26 06:50:51] -rw------- 1 boinc boinc   1215049 Nov 26 06:49 log.47556137._005582.job.log.tgz.1
[2025-11-26 06:50:51] -rw------- 1 boinc boinc      8568 Nov 26 06:49 heartbeat.json
[2025-11-26 06:50:51] -rw------- 1 boinc boinc        95 Nov 26 06:50 pilot_heartbeat.json
[2025-11-26 06:50:51] -rw-r--r-- 1 boinc boinc      8192 Nov 26 06:50 boinc_mmap_file
[2025-11-26 06:50:51] -rw-r--r-- 1 boinc boinc        28 Nov 26 06:50 wrapper_checkpoint.txt
[2025-11-26 06:50:51] -rw------- 1 boinc boinc      4824 Nov 26 06:50 pilotlog.txt
[2025-11-26 06:50:51] -rw------- 1 boinc boinc   3064383 Nov 26 06:50 log.47556137._005582.job.log.1
[2025-11-26 06:50:51] -rw------- 1 boinc boinc       353 Nov 26 06:50 output.list
[2025-11-26 06:50:51] -rw-r--r-- 1 boinc boinc       620 Nov 26 06:50 runtime_log
[2025-11-26 06:50:51] -rw------- 1 boinc boinc   4300800 Nov 26 06:50 result.tar.gz
[2025-11-26 06:50:51] -rw-r--r-- 1 boinc boinc      8918 Nov 26 06:50 runtime_log.err
[2025-11-26 06:50:51] -rw------- 1 boinc boinc       669 Nov 26 06:50 Ya4KDmUoDh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmdVKKDmvNUv6m.diag
[2025-11-26 06:50:51] -rw-r--r-- 1 boinc boinc     10738 Nov 26 06:50 stderr.txt
[2025-11-26 06:50:51] HITS file was successfully produced:
[2025-11-26 06:50:51] -rw------- 1 boinc boinc 926283502 Nov 26 06:49 shared/HITS.pool.root.1
[2025-11-26 06:50:51]  *** Contents of shared directory: ***
[2025-11-26 06:50:51] total 1309560
[2025-11-26 06:50:51] -rw-r--r-- 2 boinc boinc 409781839 Nov 26 00:48 ATLAS.root_0
[2025-11-26 06:50:51] -rw-r--r-- 2 boinc boinc    590093 Nov 26 00:48 input.tar.gz
[2025-11-26 06:50:51] -rw-r--r-- 2 boinc boinc     15847 Nov 26 00:48 start_atlas.sh
[2025-11-26 06:50:51] -rw------- 1 boinc boinc 926283502 Nov 26 06:49 HITS.pool.root.1
[2025-11-26 06:50:51] -rw------- 1 boinc boinc   4300800 Nov 26 06:50 result.tar.gz
06:50:52 (2822950): run_atlas exited; CPU time 84801.345000
06:50:52 (2822950): called boinc_finish(0)

</stderr_txt>
]]>

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