Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
15:48:08 (28726): wrapper (7.7.26015): starting
15:48:08 (28726): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 15:48:08] Arguments: --nthreads 8
[2025-11-23 15:48:08] Threads: 8
[2025-11-23 15:48:08] Checking for CVMFS
[2025-11-23 15:48:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 15:48:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 15:48:08] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 15:48:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 15:48:09] 2.11.2.0 2954 69124 86420 153220 1 81 14673703 20275201 1 130560 0 20501498 99.942 2913723 29433 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 15:48:09] CVMFS is ok
[2025-11-23 15:48:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 15:48:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 15:48:09] Further information can be found at the LHC@home message board.
[2025-11-23 15:48:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 15:48:09] Checking for apptainer binary...
[2025-11-23 15:48:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 15:48:09] Running /usr/bin/apptainer --version
[2025-11-23 15:48:09] apptainer version 1.3.2-1.el7
[2025-11-23 15:48:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 15:48:10] c-115-12.aglt2.org
[2025-11-23 15:48:10] apptainer works
[2025-11-23 15:48:10] Set ATHENA_PROC_NUMBER=8
[2025-11-23 15:48:10] Set ATHENA_CORE_NUMBER=8
[2025-11-23 15:48:10] Starting ATLAS job with PandaID=6895340069
[2025-11-23 15:48:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
18:27:24 (17445): wrapper (7.7.26015): starting
18:27:24 (17445): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 18:27:24] Arguments: --nthreads 8
[2025-11-23 18:27:24] Threads: 8
[2025-11-23 18:27:24] This job has been restarted, cleaning up previous attempt
[2025-11-23 18:27:24] Checking for CVMFS
[2025-11-23 18:27:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 18:27:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 18:27:24] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 18:27:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 18:27:24] 2.11.2.0 2954 69283 82644 153226 2 49 14884324 20275201 1 130560 0 20598906 99.942 2921733 29458 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 18:27:24] CVMFS is ok
[2025-11-23 18:27:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 18:27:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 18:27:24] Further information can be found at the LHC@home message board.
[2025-11-23 18:27:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 18:27:24] Checking for apptainer binary...
[2025-11-23 18:27:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 18:27:24] Running /usr/bin/apptainer --version
[2025-11-23 18:27:24] apptainer version 1.3.2-1.el7
[2025-11-23 18:27:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 18:27:26] c-115-12.aglt2.org
[2025-11-23 18:27:26] apptainer works
[2025-11-23 18:27:26] Set ATHENA_PROC_NUMBER=8
[2025-11-23 18:27:26] Set ATHENA_CORE_NUMBER=8
[2025-11-23 18:27:26] Starting ATLAS job with PandaID=6895340069
[2025-11-23 18:27:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 05:45:54]  *** The last 200 lines of the pilot log: ***
[2025-11-24 05:45:54] 2025-11-24 10:45:00,265 | INFO     | monitor loop #2966: job 0:6895340069 is in state 'finished'
[2025-11-24 05:45:54] 2025-11-24 10:45:00,265 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 05:45:54] 2025-11-24 10:45:00,671 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-24 05:45:54] 2025-11-24 10:45:00,675 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1729.125
[2025-11-24 05:45:54] 2025-11-24 10:45:00,677 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895340069/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 05:45:54] 2025-11-24 10:45:00,678 | INFO     | extracted standard info from prmon json
[2025-11-24 05:45:54] 2025-11-24 10:45:00,678 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 05:45:54] 2025-11-24 10:45:00,678 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 05:45:54] 2025-11-24 10:45:00,688 | INFO     | fitting pss+swap vs Time
[2025-11-24 05:45:54] 2025-11-24 10:45:00,689 | INFO     | sum of square deviations: 91600953589.73718
[2025-11-24 05:45:54] 2025-11-24 10:45:00,697 | INFO     | sum of deviations: 576684511788.609
[2025-11-24 05:45:54] 2025-11-24 10:45:00,697 | INFO     | mean x: 1763960776.1786788
[2025-11-24 05:45:54] 2025-11-24 10:45:00,698 | INFO     | mean y: 3202455.9864864866
[2025-11-24 05:45:54] 2025-11-24 10:45:00,698 | INFO     | intersect: -11102018823.487488
[2025-11-24 05:45:54] 2025-11-24 10:45:00,698 | INFO     | chi2: 6.2331921484472455
[2025-11-24 05:45:54] 2025-11-24 10:45:00,699 | INFO     | sum of square deviations: 89553453054.91666
[2025-11-24 05:45:54] 2025-11-24 10:45:00,707 | INFO     | sum of deviations: 822156936028.504
[2025-11-24 05:45:54] 2025-11-24 10:45:00,707 | INFO     | mean x: 1763960623.6838124
[2025-11-24 05:45:54] 2025-11-24 10:45:00,708 | INFO     | mean y: 3220725.5143721635
[2025-11-24 05:45:54] 2025-11-24 10:45:00,708 | INFO     | intersect: -16191045516.273952
[2025-11-24 05:45:54] 2025-11-24 10:45:00,708 | INFO     | chi2: 3.1039165155633617
[2025-11-24 05:45:54] 2025-11-24 10:45:00,708 | INFO     | current chi2=3.1039165155633617 (change=50.20341998703537 %)
[2025-11-24 05:45:54] 2025-11-24 10:45:00,709 | INFO     | sum of square deviations: 87536697282.56073
[2025-11-24 05:45:54] 2025-11-24 10:45:00,717 | INFO     | sum of deviations: 920086614196.2938
[2025-11-24 05:45:54] 2025-11-24 10:45:00,717 | INFO     | mean x: 1763960471.1890244
[2025-11-24 05:45:54] 2025-11-24 10:45:00,717 | INFO     | mean y: 3228121.2073170734
[2025-11-24 05:45:54] 2025-11-24 10:45:00,718 | INFO     | intersect: -18537526418.269077
[2025-11-24 05:45:54] 2025-11-24 10:45:00,718 | INFO     | chi2: 2.478917222918052
[2025-11-24 05:45:54] 2025-11-24 10:45:00,718 | INFO     | current chi2=2.478917222918052 (change=20.135828058245057 %)
[2025-11-24 05:45:54] 2025-11-24 10:45:00,718 | INFO     | right removable region: 655
[2025-11-24 05:45:54] 2025-11-24 10:45:00,719 | INFO     | sum of square deviations: 89553177334.9166
[2025-11-24 05:45:54] 2025-11-24 10:45:00,727 | INFO     | sum of deviations: 371947099998.40063
[2025-11-24 05:45:54] 2025-11-24 10:45:00,727 | INFO     | mean x: 1763960928.6838124
[2025-11-24 05:45:54] 2025-11-24 10:45:00,728 | INFO     | mean y: 3217673.5234493194
[2025-11-24 05:45:54] 2025-11-24 10:45:00,728 | INFO     | intersect: -7323157240.910966
[2025-11-24 05:45:54] 2025-11-24 10:45:00,728 | INFO     | chi2: 3.8796047919109693
[2025-11-24 05:45:54] 2025-11-24 10:45:00,728 | INFO     | current chi2=3.8796047919109693 (change=37.758941173064585 %)
[2025-11-24 05:45:54] 2025-11-24 10:45:00,729 | INFO     | sum of square deviations: 87536226119.31091
[2025-11-24 05:45:54] 2025-11-24 10:45:00,737 | INFO     | sum of deviations: 336176521271.53076
[2025-11-24 05:45:54] 2025-11-24 10:45:00,737 | INFO     | mean x: 1763961081.1859756
[2025-11-24 05:45:54] 2025-11-24 10:45:00,738 | INFO     | mean y: 3220376.4054878047
[2025-11-24 05:45:54] 2025-11-24 10:45:00,738 | INFO     | intersect: -6771144092.119965
[2025-11-24 05:45:54] 2025-11-24 10:45:00,738 | INFO     | chi2: 3.849145948591077
[2025-11-24 05:45:54] 2025-11-24 10:45:00,738 | INFO     | current chi2=3.849145948591077 (change=0.7851017037456902 %)
[2025-11-24 05:45:54] 2025-11-24 10:45:00,739 | INFO     | left removable region: 20
[2025-11-24 05:45:54] 2025-11-24 10:45:00,739 | INFO     | sum of square deviations: 79395981071.14967
[2025-11-24 05:45:54] 2025-11-24 10:45:00,747 | INFO     | sum of deviations: 635982774686.7721
[2025-11-24 05:45:54] 2025-11-24 10:45:00,747 | INFO     | mean x: 1763961050.7007873
[2025-11-24 05:45:54] 2025-11-24 10:45:00,747 | INFO     | mean y: 3250391.4566929135
[2025-11-24 05:45:54] 2025-11-24 10:45:00,747 | INFO     | intersect: -14126543438.520044
[2025-11-24 05:45:54] 2025-11-24 10:45:00,748 | INFO     | chi2: 0.04904428591207241
[2025-11-24 05:45:54] 2025-11-24 10:45:00,748 | INFO     | current memory leak: 8.01 B/s (using 635 data points, chi2=0.05)
[2025-11-24 05:45:54] 2025-11-24 10:45:00,749 | INFO     | could have reported an average CPU frequency of 2387 MHz (26 samples)
[2025-11-24 05:45:54] 2025-11-24 10:45:00,749 | INFO     | ..............................
[2025-11-24 05:45:54] 2025-11-24 10:45:00,749 | INFO     | . Timing measurements:
[2025-11-24 05:45:54] 2025-11-24 10:45:00,749 | INFO     | . get job = 0 s
[2025-11-24 05:45:54] 2025-11-24 10:45:00,750 | INFO     | . initial setup = 1 s
[2025-11-24 05:45:54] 2025-11-24 10:45:00,750 | INFO     | . payload setup = 8 s
[2025-11-24 05:45:54] 2025-11-24 10:45:00,750 | INFO     | . stage-in = 0 s
[2025-11-24 05:45:54] 2025-11-24 10:45:00,750 | INFO     | . payload execution = 40596 s
[2025-11-24 05:45:54] 2025-11-24 10:45:00,750 | INFO     | . stage-out = 3 s
[2025-11-24 05:45:54] 2025-11-24 10:45:00,750 | INFO     | . log creation = 0 s
[2025-11-24 05:45:54] 2025-11-24 10:45:00,750 | INFO     | ..............................
[2025-11-24 05:45:54] 2025-11-24 10:45:00,836 | INFO     | 
[2025-11-24 05:45:54] 2025-11-24 10:45:00,836 | INFO     | job summary report
[2025-11-24 05:45:54] 2025-11-24 10:45:00,837 | INFO     | --------------------------------------------------
[2025-11-24 05:45:54] 2025-11-24 10:45:00,837 | INFO     | PanDA job id: 6895340069
[2025-11-24 05:45:54] 2025-11-24 10:45:00,837 | INFO     | task id: 47556137
[2025-11-24 05:45:54] 2025-11-24 10:45:00,837 | INFO     | errors: (none)
[2025-11-24 05:45:54] 2025-11-24 10:45:00,837 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 05:45:54] 2025-11-24 10:45:00,837 | INFO     | pilot state: finished 
[2025-11-24 05:45:54] 2025-11-24 10:45:00,838 | INFO     | transexitcode: 0
[2025-11-24 05:45:54] 2025-11-24 10:45:00,838 | INFO     | exeerrorcode: 0
[2025-11-24 05:45:54] 2025-11-24 10:45:00,838 | INFO     | exeerrordiag: 
[2025-11-24 05:45:54] 2025-11-24 10:45:00,838 | INFO     | exitcode: 0
[2025-11-24 05:45:54] 2025-11-24 10:45:00,838 | INFO     | exitmsg: OK
[2025-11-24 05:45:54] 2025-11-24 10:45:00,838 | INFO     | cpuconsumptiontime: 316482 s
[2025-11-24 05:45:54] 2025-11-24 10:45:00,839 | INFO     | nevents: 1000
[2025-11-24 05:45:54] 2025-11-24 10:45:00,839 | INFO     | neventsw: 0
[2025-11-24 05:45:54] 2025-11-24 10:45:00,839 | INFO     | pid: 27677
[2025-11-24 05:45:54] 2025-11-24 10:45:00,839 | INFO     | pgrp: 27677
[2025-11-24 05:45:54] 2025-11-24 10:45:00,839 | INFO     | corecount: 8
[2025-11-24 05:45:54] 2025-11-24 10:45:00,839 | INFO     | event service: False
[2025-11-24 05:45:54] 2025-11-24 10:45:00,839 | INFO     | sizes: {0: 2298755, 1: 2298783, 6: 2299045, 11: 2299073, 40609: 2342863, 40613: 2352041, 40622: 2352231}
[2025-11-24 05:45:54] 2025-11-24 10:45:00,840 | INFO     | --------------------------------------------------
[2025-11-24 05:45:54] 2025-11-24 10:45:00,840 | INFO     | 
[2025-11-24 05:45:54] 2025-11-24 10:45:00,840 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-24 05:45:54] 2025-11-24 10:45:00,867 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 05:45:54] 2025-11-24 10:45:00,868 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 05:45:54] 2025-11-24 10:45:00,868 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 05:45:54] 2025-11-24 10:45:00,868 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 05:45:54] 2025-11-24 10:45:00,869 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 05:45:54] 2025-11-24 10:45:00,869 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 05:45:54] 2025-11-24 10:45:00,869 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 05:45:54] 2025-11-24 10:45:00,869 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 05:45:54] 2025-11-24 10:45:00,869 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 05:45:54] 2025-11-24 10:45:00,870 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 05:45:54] 2025-11-24 10:45:00,870 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 05:45:54] 2025-11-24 10:45:00,870 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 05:45:54] 2025-11-24 10:45:00,870 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 05:45:54] 2025-11-24 10:45:00,870 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 05:45:54] 2025-11-24 10:45:00,870 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 05:45:54] 2025-11-24 10:45:00,870 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 05:45:54] 2025-11-24 10:45:00,871 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 05:45:54] 2025-11-24 10:45:00,871 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 05:45:54] 2025-11-24 10:45:00,871 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 05:45:54] 2025-11-24 10:45:00,871 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 05:45:54] 2025-11-24 10:45:00,871 | INFO     | job 6895340069 has completed (purged errors)
[2025-11-24 05:45:54] 2025-11-24 10:45:00,871 | INFO     | overall cleanup function is called
[2025-11-24 05:45:54] 2025-11-24 10:45:01,885 | INFO     | --- collectZombieJob: --- 10, [27677]
[2025-11-24 05:45:54] 2025-11-24 10:45:01,885 | INFO     | zombie collector waiting for pid 27677
[2025-11-24 05:45:54] 2025-11-24 10:45:01,885 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 05:45:54] 2025-11-24 10:45:01,885 | INFO     | collected zombie processes
[2025-11-24 05:45:54] 2025-11-24 10:45:01,886 | INFO     | will attempt to kill all subprocesses of pid=27677
[2025-11-24 05:45:54] 2025-11-24 10:45:01,974 | INFO     | process IDs to be killed: [27677] (in reverse order)
[2025-11-24 05:45:54] 2025-11-24 10:45:02,030 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 05:45:54] 2025-11-24 10:45:02,031 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 05:45:54] 2025-11-24 10:45:02,035 | INFO     | did not find any defunct processes belonging to 27677
[2025-11-24 05:45:54] 2025-11-24 10:45:02,039 | INFO     | did not find any defunct processes belonging to 27677
[2025-11-24 05:45:54] 2025-11-24 10:45:02,041 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 05:45:54] 2025-11-24 10:45:02,041 | INFO     | ready for new job
[2025-11-24 05:45:54] 2025-11-24 10:45:02,042 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 05:45:54] 2025-11-24 10:45:02,045 | INFO     | ***************************************
[2025-11-24 05:45:54] 2025-11-24 10:45:02,045 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 05:45:54] 2025-11-24 10:45:02,045 | INFO     | ***************************************
[2025-11-24 05:45:54] 2025-11-24 10:45:02,045 | INFO     | 
[2025-11-24 05:45:54] 2025-11-24 10:45:02,046 | INFO     | architecture information:
[2025-11-24 05:45:54] 2025-11-24 10:45:02,046 | INFO     | executing command: cat /etc/os-release
[2025-11-24 05:45:54] 2025-11-24 10:45:02,064 | INFO     | cat /etc/os-release:
[2025-11-24 05:45:54] NAME="CentOS Linux"
[2025-11-24 05:45:54] VERSION="7 (Core)"
[2025-11-24 05:45:54] ID="centos"
[2025-11-24 05:45:54] ID_LIKE="rhel fedora"
[2025-11-24 05:45:54] VERSION_ID="7"
[2025-11-24 05:45:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 05:45:54] ANSI_COLOR="0;31"
[2025-11-24 05:45:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 05:45:54] HOME_URL="https://www.centos.org/"
[2025-11-24 05:45:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 05:45:54] 
[2025-11-24 05:45:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 05:45:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 05:45:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 05:45:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 05:45:54] 
[2025-11-24 05:45:54] 2025-11-24 10:45:02,064 | INFO     | ***************************************
[2025-11-24 05:45:54] 2025-11-24 10:45:02,567 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-24 05:45:54] 2025-11-24 10:45:02,588 | INFO     | sufficient remaining disk space (17600348160 B)
[2025-11-24 05:45:54] 2025-11-24 10:45:02,589 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 05:45:54] 2025-11-24 10:45:02,589 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 05:45:54] 2025-11-24 10:45:02,589 | INFO     | update_server=False
[2025-11-24 05:45:54] 2025-11-24 10:45:02,589 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 05:45:54] 2025-11-24 10:45:02,590 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 05:45:54] 2025-11-24 10:45:02,590 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 05:45:54] 2025-11-24 10:45:02,609 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 05:45:54] 2025-11-24 10:45:02,769 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-24 05:45:54] 2025-11-24 10:45:02,769 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-24 05:45:54] 2025-11-24 10:45:02,769 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 05:45:54] 2025-11-24 10:45:02,769 | INFO     | will abort loop
[2025-11-24 05:45:54] 2025-11-24 10:45:02,859 | INFO     | all payload control threads have been joined
[2025-11-24 05:45:54] 2025-11-24 10:45:03,155 | INFO     | all data control threads have been joined
[2025-11-24 05:45:54] 2025-11-24 10:45:03,594 | INFO     | [job] retrieve thread has finished
[2025-11-24 05:45:54] 2025-11-24 10:45:03,595 | INFO     | [job] queue monitor thread has finished
[2025-11-24 05:45:54] 2025-11-24 10:45:03,682 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 05:45:54] 2025-11-24 10:45:03,775 | INFO     | [job] job monitor thread has finished
[2025-11-24 05:45:54] 2025-11-24 10:45:03,775 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 05:45:54] 2025-11-24 10:45:03,809 | INFO     | [payload] validate_post thread has finished
[2025-11-24 05:45:54] 2025-11-24 10:45:03,865 | INFO     | [payload] control thread has finished
[2025-11-24 05:45:54] 2025-11-24 10:45:03,964 | INFO     | all job control threads have been joined
[2025-11-24 05:45:54] 2025-11-24 10:45:04,161 | INFO     | [data] control thread has finished
[2025-11-24 05:45:54] 2025-11-24 10:45:04,596 | INFO     | [data] copytool_out thread has finished
[2025-11-24 05:45:54] 2025-11-24 10:45:04,837 | INFO     | [payload] failed_post thread has finished
[2025-11-24 05:45:54] 2025-11-24 10:45:04,970 | INFO     | [job] control thread has finished
[2025-11-24 05:45:54] 2025-11-24 10:45:05,028 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 05:45:54] 2025-11-24 10:45:05,031 | INFO     | [job] validate thread has finished
[2025-11-24 05:45:54] 2025-11-24 10:45:05,032 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 05:45:54] 2025-11-24 10:45:05,032 | INFO     | [data] copytool_in thread has finished
[2025-11-24 05:45:54] 2025-11-24 10:45:06,615 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 05:45:54] 2025-11-24 10:45:32,988 | INFO     | PID=21246 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 05:45:54] 2025-11-24 10:45:32,988 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 05:45:54] 2025-11-24 10:45:32,988 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 05:45:54] 2025-11-24 10:45:32,989 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 05:45:54] 2025-11-24 10:45:48,878 | INFO     | [monitor] cgroup control has ended
[2025-11-24 05:45:54] 2025-11-24 10:45:49,569 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140327920609088)>', '<ExcThread(monitor, started 140327469946624)>']
[2025-11-24 05:45:54] 2025-11-24 10:45:50,065 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 05:45:54] 2025-11-24 10:45:50,065 | INFO     | [monitor] control thread has ended
[2025-11-24 05:45:54] 2025-11-24 10:45:54,594 | INFO     | all workflow threads have been joined
[2025-11-24 05:45:54] 2025-11-24 10:45:54,595 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 05:45:54] 2025-11-24 10:45:54,595 | INFO     | traces error code: 0
[2025-11-24 05:45:54] 2025-11-24 10:45:54,595 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 05:45:54] 2025-11-24 10:45:54,702 [wrapper] ==== pilot stdout END ====
[2025-11-24 05:45:54] 2025-11-24 10:45:54,707 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 05:45:54] 2025-11-24 10:45:54,712 [wrapper] pilotpid: 21246
[2025-11-24 05:45:54] 2025-11-24 10:45:54,717 [wrapper] Pilot exit status: 0
[2025-11-24 05:45:54] 2025-11-24 10:45:54,735 [wrapper] pandaids: 6895340069 6895340069
[2025-11-24 05:45:54] 2025-11-24 10:45:54,789 [wrapper] cleanup supervisor_pilot 23873 21247
[2025-11-24 05:45:54] 2025-11-24 10:45:54,794 [wrapper] Test setup, not cleaning
[2025-11-24 05:45:54] 2025-11-24 10:45:54,798 [wrapper] apfmon messages muted
[2025-11-24 05:45:54] 2025-11-24 10:45:54,803 [wrapper] ==== wrapper stdout END ====
[2025-11-24 05:45:54] 2025-11-24 10:45:54,808 [wrapper] ==== wrapper stderr END ====
[2025-11-24 05:45:54]  *** Error codes and diagnostics ***
[2025-11-24 05:45:54]     "exeErrorCode": 0,
[2025-11-24 05:45:54]     "exeErrorDiag": "",
[2025-11-24 05:45:54]     "pilotErrorCode": 0,
[2025-11-24 05:45:54]     "pilotErrorDiag": "",
[2025-11-24 05:45:54]  *** Listing of results directory ***
[2025-11-24 05:45:54] total 1723280
[2025-11-24 05:45:54] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-24 05:45:54] -rw-r--r-- 1 boincer umatlas    576529 Nov 22 07:20 pilot3.tar.gz
[2025-11-24 05:45:54] -rw-r--r-- 1 boincer umatlas      5112 Nov 22 07:37 queuedata.json
[2025-11-24 05:45:54] -rwx------ 1 boincer umatlas     36292 Nov 22 07:37 runpilot2-wrapper.sh
[2025-11-24 05:45:54] -rw-r--r-- 1 boincer umatlas       100 Nov 23 15:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 05:45:54] -rwxr-xr-x 1 boincer umatlas      7986 Nov 23 15:48 run_atlas
[2025-11-24 05:45:54] -rw-r--r-- 1 boincer umatlas       105 Nov 23 15:48 job.xml
[2025-11-24 05:45:54] -rw-r--r-- 3 boincer umatlas 408728986 Nov 23 15:48 EVNT.47483658._000371.pool.root.1
[2025-11-24 05:45:54] -rw-r--r-- 3 boincer umatlas 408728986 Nov 23 15:48 ATLAS.root_0
[2025-11-24 05:45:54] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 15:48 start_atlas.sh
[2025-11-24 05:45:54] drwxrwx--x 2 boincer umatlas      4096 Nov 23 15:48 shared
[2025-11-24 05:45:54] -rw-r--r-- 2 boincer umatlas    590099 Nov 23 15:48 input.tar.gz
[2025-11-24 05:45:54] -rw-r--r-- 1 boincer umatlas         0 Nov 23 15:48 boinc_lockfile
[2025-11-24 05:45:54] -rw-r--r-- 1 boincer umatlas      2784 Nov 23 18:27 pandaJob.out
[2025-11-24 05:45:54] -rw------- 1 boincer umatlas        57 Nov 23 18:27 setup.sh.local
[2025-11-24 05:45:54] -rw------- 1 boincer umatlas    989786 Nov 23 18:27 agis_schedconf.cvmfs.json
[2025-11-24 05:45:54] -rw-r--r-- 1 boincer umatlas       533 Nov 24 05:33 boinc_task_state.xml
[2025-11-24 05:45:54] -rw-r--r-- 1 boincer umatlas      5912 Nov 24 05:37 init_data.xml
[2025-11-24 05:45:54] -rw------- 1 boincer umatlas 928224371 Nov 24 05:44 HITS.47556137._003672.pool.root.1
[2025-11-24 05:45:54] -rw------- 1 boincer umatlas      1061 Nov 24 05:44 memory_monitor_summary.json
[2025-11-24 05:45:54] -rw------- 1 boincer umatlas   1526164 Nov 24 05:44 agis_ddmendpoints.agis.ALL.json
[2025-11-24 05:45:54] -rw------- 1 boincer umatlas   1928289 Nov 24 05:44 log.47556137._003672.job.log.tgz.1
[2025-11-24 05:45:54] -rw------- 1 boincer umatlas      8672 Nov 24 05:45 heartbeat.json
[2025-11-24 05:45:54] -rw------- 1 boincer umatlas        96 Nov 24 05:45 pilot_heartbeat.json
[2025-11-24 05:45:54] -rw-r--r-- 1 boincer umatlas      8192 Nov 24 05:45 boinc_mmap_file
[2025-11-24 05:45:54] -rw-r--r-- 1 boincer umatlas        29 Nov 24 05:45 wrapper_checkpoint.txt
[2025-11-24 05:45:54] -rw------- 1 boincer umatlas      4932 Nov 24 05:45 pilotlog.txt
[2025-11-24 05:45:54] -rw------- 1 boincer umatlas   5584063 Nov 24 05:45 log.47556137._003672.job.log.1
[2025-11-24 05:45:54] -rw------- 1 boincer umatlas       353 Nov 24 05:45 output.list
[2025-11-24 05:45:54] -rw-r--r-- 1 boincer umatlas       620 Nov 24 05:45 runtime_log
[2025-11-24 05:45:54] -rw------- 1 boincer umatlas   7536640 Nov 24 05:45 result.tar.gz
[2025-11-24 05:45:54] -rw------- 1 boincer umatlas       792 Nov 24 05:45 t71LDmR31g8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmq6HKDm2UIbXn.diag
[2025-11-24 05:45:54] -rw-r--r-- 1 boincer umatlas      9428 Nov 24 05:45 runtime_log.err
[2025-11-24 05:45:54] -rw-r--r-- 1 boincer umatlas     23440 Nov 24 05:45 stderr.txt
[2025-11-24 05:45:54] HITS file was successfully produced:
[2025-11-24 05:45:54] -rw------- 1 boincer umatlas 928224371 Nov 24 05:44 shared/HITS.pool.root.1
[2025-11-24 05:45:54]  *** Contents of shared directory: ***
[2025-11-24 05:45:54] total 1313584
[2025-11-24 05:45:54] -rw-r--r-- 3 boincer umatlas 408728986 Nov 23 15:48 ATLAS.root_0
[2025-11-24 05:45:54] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 15:48 start_atlas.sh
[2025-11-24 05:45:54] -rw-r--r-- 2 boincer umatlas    590099 Nov 23 15:48 input.tar.gz
[2025-11-24 05:45:54] -rw------- 1 boincer umatlas 928224371 Nov 24 05:44 HITS.pool.root.1
[2025-11-24 05:45:54] -rw------- 1 boincer umatlas   7536640 Nov 24 05:45 result.tar.gz
05:45:56 (17445): run_atlas exited; CPU time 314978.780498
05:45:56 (17445): called boinc_finish(0)

</stderr_txt>
]]>

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