Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:31:03 (1926006): wrapper (7.7.26015): starting
13:31:03 (1926006): wrapper: running run_atlas (--nthreads 3)
[2025-11-26 13:31:03] Arguments: --nthreads 3
[2025-11-26 13:31:03] Threads: 3
[2025-11-26 13:31:03] Checking for CVMFS
[2025-11-26 13:31:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 13:31:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 13:31:03] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 13:31:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 13:31:03] 2.9.2.0 2059758 11180 92968 153322 2 81 19180627 36864000 0 130560 1 4142988 99.931 566433 738 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 13:31:03] CVMFS is ok
[2025-11-26 13:31:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 13:31:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 13:31:03] Further information can be found at the LHC@home message board.
[2025-11-26 13:31:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 13:31:03] Checking for apptainer binary...
[2025-11-26 13:31:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 13:31:03] Running /usr/bin/apptainer --version
[2025-11-26 13:31:03] apptainer version 1.4.1-1.1
[2025-11-26 13:31:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 13:31:03] atlasA303
[2025-11-26 13:31:03] apptainer works
[2025-11-26 13:31:04] Set ATHENA_PROC_NUMBER=3
[2025-11-26 13:31:04] Set ATHENA_CORE_NUMBER=3
[2025-11-26 13:31:04] Starting ATLAS job with PandaID=6895340881
[2025-11-26 13:31:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 21:29:52]  *** The last 200 lines of the pilot log: ***
[2025-11-26 21:29:52] 2025-11-26 20:29:20,457 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 21:29:52] 2025-11-26 20:29:20,457 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 21:29:52] 2025-11-26 20:29:20,457 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 21:29:52] 2025-11-26 20:29:20,457 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 21:29:52] 2025-11-26 20:29:20,458 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 21:29:52] 2025-11-26 20:29:20,458 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 21:29:52] 2025-11-26 20:29:20,458 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 21:29:52] 2025-11-26 20:29:20,458 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 21:29:52] 2025-11-26 20:29:20,458 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 21:29:52] 2025-11-26 20:29:20,458 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 21:29:52] 2025-11-26 20:29:20,458 | INFO     | job 6895340881 has completed (purged errors)
[2025-11-26 21:29:52] 2025-11-26 20:29:20,458 | INFO     | overall cleanup function is called
[2025-11-26 21:29:52] 2025-11-26 20:29:21,466 | INFO     | --- collectZombieJob: --- 10, [1936257]
[2025-11-26 21:29:52] 2025-11-26 20:29:21,467 | INFO     | zombie collector waiting for pid 1936257
[2025-11-26 21:29:52] 2025-11-26 20:29:21,467 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 21:29:52] 2025-11-26 20:29:21,467 | INFO     | collected zombie processes
[2025-11-26 21:29:52] 2025-11-26 20:29:21,467 | INFO     | will attempt to kill all subprocesses of pid=1936257
[2025-11-26 21:29:52] 2025-11-26 20:29:21,510 | INFO     | process IDs to be killed: [1936257] (in reverse order)
[2025-11-26 21:29:52] 2025-11-26 20:29:21,536 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 21:29:52] 2025-11-26 20:29:21,536 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 21:29:52] 2025-11-26 20:29:21,537 | INFO     | did not find any defunct processes belonging to 1936257
[2025-11-26 21:29:52] 2025-11-26 20:29:21,538 | INFO     | did not find any defunct processes belonging to 1936257
[2025-11-26 21:29:52] 2025-11-26 20:29:21,539 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 21:29:52] 2025-11-26 20:29:21,539 | INFO     | ready for new job
[2025-11-26 21:29:52] 2025-11-26 20:29:21,539 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 21:29:52] 2025-11-26 20:29:21,540 | INFO     | ***************************************
[2025-11-26 21:29:52] 2025-11-26 20:29:21,540 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 21:29:52] 2025-11-26 20:29:21,540 | INFO     | ***************************************
[2025-11-26 21:29:52] 2025-11-26 20:29:21,540 | INFO     | 
[2025-11-26 21:29:52] 2025-11-26 20:29:21,540 | INFO     | architecture information:
[2025-11-26 21:29:52] 2025-11-26 20:29:21,541 | INFO     | executing command: cat /etc/os-release
[2025-11-26 21:29:52] 2025-11-26 20:29:21,549 | INFO     | cat /etc/os-release:
[2025-11-26 21:29:52] NAME="CentOS Linux"
[2025-11-26 21:29:52] VERSION="7 (Core)"
[2025-11-26 21:29:52] ID="centos"
[2025-11-26 21:29:52] ID_LIKE="rhel fedora"
[2025-11-26 21:29:52] VERSION_ID="7"
[2025-11-26 21:29:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 21:29:52] ANSI_COLOR="0;31"
[2025-11-26 21:29:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 21:29:52] HOME_URL="https://www.centos.org/"
[2025-11-26 21:29:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 21:29:52] 
[2025-11-26 21:29:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 21:29:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 21:29:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 21:29:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 21:29:52] 
[2025-11-26 21:29:52] 2025-11-26 20:29:21,549 | INFO     | ***************************************
[2025-11-26 21:29:52] 2025-11-26 20:29:22,053 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-26 21:29:52] 2025-11-26 20:29:22,065 | INFO     | sufficient remaining disk space (383035375616 B)
[2025-11-26 21:29:52] 2025-11-26 20:29:22,065 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 21:29:52] 2025-11-26 20:29:22,065 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 21:29:52] 2025-11-26 20:29:22,066 | INFO     | update_server=False
[2025-11-26 21:29:52] 2025-11-26 20:29:22,066 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 21:29:52] 2025-11-26 20:29:22,066 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 21:29:52] 2025-11-26 20:29:22,066 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 21:29:52] 2025-11-26 20:29:22,066 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 21:29:52] 2025-11-26 20:29:22,066 | INFO     | aborting loop
[2025-11-26 21:29:52] 2025-11-26 20:29:22,309 | INFO     | all job control threads have been joined
[2025-11-26 21:29:52] 2025-11-26 20:29:23,047 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 21:29:52] 2025-11-26 20:29:23,071 | INFO     | [job] retrieve thread has finished
[2025-11-26 21:29:52] 2025-11-26 20:29:23,072 | INFO     | [job] job monitor thread has finished
[2025-11-26 21:29:52] 2025-11-26 20:29:23,071 | INFO     | [job] queue monitor thread has finished
[2025-11-26 21:29:52] 2025-11-26 20:29:23,087 | INFO     | all data control threads have been joined
[2025-11-26 21:29:52] 2025-11-26 20:29:23,221 | INFO     | [data] copytool_in thread has finished
[2025-11-26 21:29:52] 2025-11-26 20:29:23,257 | INFO     | all payload control threads have been joined
[2025-11-26 21:29:52] 2025-11-26 20:29:23,315 | INFO     | [job] control thread has finished
[2025-11-26 21:29:52] 2025-11-26 20:29:23,581 | INFO     | [payload] failed_post thread has finished
[2025-11-26 21:29:52] 2025-11-26 20:29:23,758 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 21:29:52] 2025-11-26 20:29:23,761 | INFO     | [job] validate thread has finished
[2025-11-26 21:29:52] 2025-11-26 20:29:23,953 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 21:29:52] 2025-11-26 20:29:23,997 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 21:29:52] 2025-11-26 20:29:24,093 | INFO     | [data] control thread has finished
[2025-11-26 21:29:52] 2025-11-26 20:29:24,261 | INFO     | [payload] control thread has finished
[2025-11-26 21:29:52] 2025-11-26 20:29:24,582 | INFO     | [payload] validate_post thread has finished
[2025-11-26 21:29:52] 2025-11-26 20:29:25,053 | INFO     | [data] copytool_out thread has finished
[2025-11-26 21:29:52] 2025-11-26 20:29:26,073 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 21:29:52] 2025-11-26 20:29:32,994 | INFO     | job.realtimelogging is not enabled
[2025-11-26 21:29:52] 2025-11-26 20:29:34,000 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 21:29:52] 2025-11-26 20:29:43,268 | INFO     | [monitor] cgroup control has ended
[2025-11-26 21:29:52] 2025-11-26 20:29:45,294 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139829814175552)>', '<ExcThread(monitor, started 139829102769920)>']
[2025-11-26 21:29:52] 2025-11-26 20:29:50,318 | INFO     | all workflow threads have been joined
[2025-11-26 21:29:52] 2025-11-26 20:29:50,318 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 21:29:52] 2025-11-26 20:29:50,318 | INFO     | traces error code: 0
[2025-11-26 21:29:52] 2025-11-26 20:29:50,318 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 21:29:52] 2025-11-26 20:29:52,547 | INFO     | PID=1929753 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 21:29:52] 2025-11-26 20:29:52,547 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 21:29:52] 2025-11-26 20:29:52,547 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 21:29:52] 2025-11-26 20:29:52,547 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 21:29:52] 2025-11-26 20:29:52,547 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 21:29:52] 2025-11-26 20:29:52,547 | INFO     | [monitor] control thread has ended
[2025-11-26 21:29:52] 2025-11-26 20:29:52,600 [wrapper] ==== pilot stdout END ====
[2025-11-26 21:29:52] 2025-11-26 20:29:52,602 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 21:29:52] 2025-11-26 20:29:52,605 [wrapper] pilotpid: 1929753
[2025-11-26 21:29:52] 2025-11-26 20:29:52,607 [wrapper] Pilot exit status: 0
[2025-11-26 21:29:52] 2025-11-26 20:29:52,614 [wrapper] pandaids: 6895340881
[2025-11-26 21:29:52] 2025-11-26 20:29:52,630 [wrapper] cleanup supervisor_pilot 2094322 1929754
[2025-11-26 21:29:52] 2025-11-26 20:29:52,633 [wrapper] Test setup, not cleaning
[2025-11-26 21:29:52] 2025-11-26 20:29:52,635 [wrapper] apfmon messages muted
[2025-11-26 21:29:52] 2025-11-26 20:29:52,638 [wrapper] ==== wrapper stdout END ====
[2025-11-26 21:29:52] 2025-11-26 20:29:52,640 [wrapper] ==== wrapper stderr END ====
[2025-11-26 21:29:52]  *** Error codes and diagnostics ***
[2025-11-26 21:29:52]     "exeErrorCode": 0,
[2025-11-26 21:29:52]     "exeErrorDiag": "",
[2025-11-26 21:29:52]     "pilotErrorCode": 0,
[2025-11-26 21:29:52]     "pilotErrorDiag": "",
[2025-11-26 21:29:52]  *** Listing of results directory ***
[2025-11-26 21:29:52] total 1296248
[2025-11-26 21:29:52] -rw-r--r-- 1 boinc boinc    576529 Nov 22 15:16 pilot3.tar.gz
[2025-11-26 21:29:52] -rw-r--r-- 1 boinc boinc      5112 Nov 22 15:57 queuedata.json
[2025-11-26 21:29:52] -rwx------ 1 boinc boinc     36292 Nov 22 15:58 runpilot2-wrapper.sh
[2025-11-26 21:29:52] -rw-r--r-- 1 boinc boinc       100 Nov 26 13:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 21:29:52] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 13:31 run_atlas
[2025-11-26 21:29:52] -rw-r--r-- 1 boinc boinc       105 Nov 26 13:31 job.xml
[2025-11-26 21:29:52] -rw-r--r-- 2 boinc boinc 407317322 Nov 26 13:31 EVNT.47483658._000398.pool.root.1
[2025-11-26 21:29:52] -rw-r--r-- 2 boinc boinc    590103 Nov 26 13:31 input.tar.gz
[2025-11-26 21:29:52] -rw-r--r-- 2 boinc boinc     15847 Nov 26 13:31 start_atlas.sh
[2025-11-26 21:29:52] drwxrwx--x 2 boinc boinc      4096 Nov 26 13:31 shared
[2025-11-26 21:29:52] -rw-r--r-- 1 boinc boinc         0 Nov 26 13:31 boinc_setup_complete
[2025-11-26 21:29:52] -rw-r--r-- 1 boinc boinc      6448 Nov 26 13:31 init_data.xml
[2025-11-26 21:29:52] -rw-r--r-- 1 boinc boinc         0 Nov 26 13:31 boinc_lockfile
[2025-11-26 21:29:52] -rw-r--r-- 1 boinc boinc      2784 Nov 26 13:31 pandaJob.out
[2025-11-26 21:29:52] -rw------- 1 boinc boinc    991830 Nov 26 13:31 agis_schedconf.cvmfs.json
[2025-11-26 21:29:52] drwx------ 5 boinc boinc      4096 Nov 26 13:31 pilot3
[2025-11-26 21:29:52] -rw-r--r-- 1 boinc boinc       531 Nov 26 21:25 boinc_task_state.xml
[2025-11-26 21:29:52] -rw------- 1 boinc boinc 905748624 Nov 26 21:28 HITS.47556137._003938.pool.root.1
[2025-11-26 21:29:52] -rw------- 1 boinc boinc      1022 Nov 26 21:29 memory_monitor_summary.json
[2025-11-26 21:29:52] -rw------- 1 boinc boinc   1516240 Nov 26 21:29 agis_ddmendpoints.agis.ALL.json
[2025-11-26 21:29:52] -rw------- 1 boinc boinc   1156510 Nov 26 21:29 log.47556137._003938.job.log.tgz.1
[2025-11-26 21:29:52] -rw------- 1 boinc boinc      8561 Nov 26 21:29 heartbeat.json
[2025-11-26 21:29:52] -rw-r--r-- 1 boinc boinc      8192 Nov 26 21:29 boinc_mmap_file
[2025-11-26 21:29:52] -rw-r--r-- 1 boinc boinc        28 Nov 26 21:29 wrapper_checkpoint.txt
[2025-11-26 21:29:52] -rw------- 1 boinc boinc       747 Nov 26 21:29 pilotlog.txt
[2025-11-26 21:29:52] -rw------- 1 boinc boinc        95 Nov 26 21:29 pilot_heartbeat.json
[2025-11-26 21:29:52] -rw------- 1 boinc boinc   4037922 Nov 26 21:29 log.47556137._003938.job.log.1
[2025-11-26 21:29:52] -rw------- 1 boinc boinc       353 Nov 26 21:29 output.list
[2025-11-26 21:29:52] -rw-r--r-- 1 boinc boinc       620 Nov 26 21:29 runtime_log
[2025-11-26 21:29:52] -rw------- 1 boinc boinc   5212160 Nov 26 21:29 result.tar.gz
[2025-11-26 21:29:52] -rw-r--r-- 1 boinc boinc      8913 Nov 26 21:29 runtime_log.err
[2025-11-26 21:29:52] -rw------- 1 boinc boinc       668 Nov 26 21:29 MKTNDmzE4g8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmyCKKDmlFwEem.diag
[2025-11-26 21:29:52] -rw-r--r-- 1 boinc boinc     12149 Nov 26 21:29 stderr.txt
[2025-11-26 21:29:52] HITS file was successfully produced:
[2025-11-26 21:29:52] -rw------- 1 boinc boinc 905748624 Nov 26 21:28 shared/HITS.pool.root.1
[2025-11-26 21:29:52]  *** Contents of shared directory: ***
[2025-11-26 21:29:52] total 1287992
[2025-11-26 21:29:52] -rw-r--r-- 2 boinc boinc 407317322 Nov 26 13:31 ATLAS.root_0
[2025-11-26 21:29:52] -rw-r--r-- 2 boinc boinc    590103 Nov 26 13:31 input.tar.gz
[2025-11-26 21:29:52] -rw-r--r-- 2 boinc boinc     15847 Nov 26 13:31 start_atlas.sh
[2025-11-26 21:29:52] -rw------- 1 boinc boinc 905748624 Nov 26 21:28 HITS.pool.root.1
[2025-11-26 21:29:52] -rw------- 1 boinc boinc   5212160 Nov 26 21:29 result.tar.gz
21:29:54 (1926006): run_atlas exited; CPU time 84596.254639
21:29:54 (1926006): called boinc_finish(0)

</stderr_txt>
]]>

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