Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
15:22:49 (539): wrapper (7.7.26015): starting
15:22:49 (539): wrapper: running run_atlas (--nthreads 12)
[2025-11-23 15:22:49] Arguments: --nthreads 12
[2025-11-23 15:22:49] Threads: 12
[2025-11-23 15:22:49] Checking for CVMFS
[2025-11-23 15:22:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 15:22:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 15:22:49] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 15:22:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 15:22:49] 2.11.2.0 3009 69103 97932 153220 0 81 12368715 20275201 1 130560 0 28284837 99.910 3668529 34321 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 15:22:49] CVMFS is ok
[2025-11-23 15:22:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 15:22:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 15:22:49] Further information can be found at the LHC@home message board.
[2025-11-23 15:22:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 15:22:49] Checking for apptainer binary...
[2025-11-23 15:22:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 15:22:49] Running /usr/bin/apptainer --version
[2025-11-23 15:22:49] apptainer version 1.3.2-1.el7
[2025-11-23 15:22:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 15:22:51] c-115-42.aglt2.org
[2025-11-23 15:22:51] apptainer works
[2025-11-23 15:22:51] Set ATHENA_PROC_NUMBER=12
[2025-11-23 15:22:51] Set ATHENA_CORE_NUMBER=12
[2025-11-23 15:22:51] Starting ATLAS job with PandaID=6895351514
[2025-11-23 15:22:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 21:50:08]  *** The last 200 lines of the pilot log: ***
[2025-11-23 21:50:08] 2025-11-24 02:49:36,076 | INFO     | monitor loop #1735: job 0:6895351514 is in state 'finished'
[2025-11-23 21:50:08] 2025-11-24 02:49:36,077 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 21:50:08] 2025-11-24 02:49:36,661 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-23 21:50:08] 2025-11-24 02:49:36,665 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2025-11-23 21:50:08] 2025-11-24 02:49:36,667 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895351514/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 21:50:08] 2025-11-24 02:49:36,668 | INFO     | extracted standard info from prmon json
[2025-11-23 21:50:08] 2025-11-24 02:49:36,668 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 21:50:08] 2025-11-24 02:49:36,668 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 21:50:08] 2025-11-24 02:49:36,675 | INFO     | fitting pss+swap vs Time
[2025-11-23 21:50:08] 2025-11-24 02:49:36,676 | INFO     | sum of square deviations: 17014713035.536854
[2025-11-23 21:50:08] 2025-11-24 02:49:36,678 | INFO     | sum of deviations: 251590481531.39975
[2025-11-23 21:50:08] 2025-11-24 02:49:36,679 | INFO     | mean x: 1763940973.6736841
[2025-11-23 21:50:08] 2025-11-24 02:49:36,679 | INFO     | mean y: 4094969.1
[2025-11-23 21:50:08] 2025-11-24 02:49:36,679 | INFO     | intersect: -26078669872.871117
[2025-11-23 21:50:08] 2025-11-24 02:49:36,679 | INFO     | chi2: 5.510351870875201
[2025-11-23 21:50:08] 2025-11-24 02:49:36,680 | INFO     | sum of square deviations: 16351892830.384018
[2025-11-23 21:50:08] 2025-11-24 02:49:36,682 | INFO     | sum of deviations: 420713639486.90393
[2025-11-23 21:50:08] 2025-11-24 02:49:36,683 | INFO     | mean x: 1763940821.176
[2025-11-23 21:50:08] 2025-11-24 02:49:36,683 | INFO     | mean y: 4133836.1226666667
[2025-11-23 21:50:08] 2025-11-24 02:49:36,683 | INFO     | intersect: -45379845279.58713
[2025-11-23 21:50:08] 2025-11-24 02:49:36,683 | INFO     | chi2: 2.694629889928231
[2025-11-23 21:50:08] 2025-11-24 02:49:36,683 | INFO     | current chi2=2.694629889928231 (change=51.09876913358988 %)
[2025-11-23 21:50:08] 2025-11-24 02:49:36,684 | INFO     | sum of square deviations: 15706514812.727034
[2025-11-23 21:50:08] 2025-11-24 02:49:36,686 | INFO     | sum of deviations: 450806143881.9594
[2025-11-23 21:50:08] 2025-11-24 02:49:36,687 | INFO     | mean x: 1763940668.6783783
[2025-11-23 21:50:08] 2025-11-24 02:49:36,687 | INFO     | mean y: 4140893.9324324327
[2025-11-23 21:50:08] 2025-11-24 02:49:36,687 | INFO     | intersect: -50624232132.47032
[2025-11-23 21:50:08] 2025-11-24 02:49:36,688 | INFO     | chi2: 2.4637269042668435
[2025-11-23 21:50:08] 2025-11-24 02:49:36,688 | INFO     | current chi2=2.4637269042668435 (change=8.569005581227982 %)
[2025-11-23 21:50:08] 2025-11-24 02:49:36,688 | INFO     | right removable region: 369
[2025-11-23 21:50:08] 2025-11-24 02:49:36,688 | INFO     | sum of square deviations: 16351852570.384027
[2025-11-23 21:50:08] 2025-11-24 02:49:36,691 | INFO     | sum of deviations: 108125520057.88821
[2025-11-23 21:50:08] 2025-11-24 02:49:36,691 | INFO     | mean x: 1763941126.176
[2025-11-23 21:50:08] 2025-11-24 02:49:36,691 | INFO     | mean y: 4127844.6986666666
[2025-11-23 21:50:08] 2025-11-24 02:49:36,691 | INFO     | intersect: -11659813644.396946
[2025-11-23 21:50:08] 2025-11-24 02:49:36,692 | INFO     | chi2: 3.174858852059062
[2025-11-23 21:50:08] 2025-11-24 02:49:36,692 | INFO     | current chi2=3.174858852059062 (change=42.383736529790724 %)
[2025-11-23 21:50:08] 2025-11-24 02:49:36,692 | INFO     | sum of square deviations: 15706434292.72704
[2025-11-23 21:50:08] 2025-11-24 02:49:36,695 | INFO     | sum of deviations: 76924544143.00014
[2025-11-23 21:50:08] 2025-11-24 02:49:36,695 | INFO     | mean x: 1763941278.6783783
[2025-11-23 21:50:08] 2025-11-24 02:49:36,695 | INFO     | mean y: 4135203.0
[2025-11-23 21:50:08] 2025-11-24 02:49:36,695 | INFO     | intersect: -8635023515.550606
[2025-11-23 21:50:08] 2025-11-24 02:49:36,696 | INFO     | chi2: 3.1162753954198097
[2025-11-23 21:50:08] 2025-11-24 02:49:36,696 | INFO     | current chi2=3.1162753954198097 (change=1.8452302722452623 %)
[2025-11-23 21:50:08] 2025-11-24 02:49:36,696 | INFO     | left removable region: 20
[2025-11-23 21:50:08] 2025-11-24 02:49:36,696 | INFO     | sum of square deviations: 13181053169.627531
[2025-11-23 21:50:08] 2025-11-24 02:49:36,699 | INFO     | sum of deviations: 242134419440.9284
[2025-11-23 21:50:08] 2025-11-24 02:49:36,699 | INFO     | mean x: 1763941248.1805158
[2025-11-23 21:50:08] 2025-11-24 02:49:36,699 | INFO     | mean y: 4191303.842406877
[2025-11-23 21:50:08] 2025-11-24 02:49:36,699 | INFO     | intersect: -32399205037.82981
[2025-11-23 21:50:08] 2025-11-24 02:49:36,700 | INFO     | chi2: 0.015112097885068381
[2025-11-23 21:50:08] 2025-11-24 02:49:36,700 | INFO     | current memory leak: 18.37 B/s (using 349 data points, chi2=0.02)
[2025-11-23 21:50:08] 2025-11-24 02:49:36,700 | INFO     | could have reported an average CPU frequency of 2550 MHz (16 samples)
[2025-11-23 21:50:08] 2025-11-24 02:49:36,700 | INFO     | ..............................
[2025-11-23 21:50:08] 2025-11-24 02:49:36,700 | INFO     | . Timing measurements:
[2025-11-23 21:50:08] 2025-11-24 02:49:36,700 | INFO     | . get job = 0 s
[2025-11-23 21:50:08] 2025-11-24 02:49:36,701 | INFO     | . initial setup = 2 s
[2025-11-23 21:50:08] 2025-11-24 02:49:36,701 | INFO     | . payload setup = 7 s
[2025-11-23 21:50:08] 2025-11-24 02:49:36,701 | INFO     | . stage-in = 0 s
[2025-11-23 21:50:08] 2025-11-24 02:49:36,701 | INFO     | . payload execution = 23153 s
[2025-11-23 21:50:08] 2025-11-24 02:49:36,701 | INFO     | . stage-out = 3 s
[2025-11-23 21:50:08] 2025-11-24 02:49:36,701 | INFO     | . log creation = 0 s
[2025-11-23 21:50:08] 2025-11-24 02:49:36,701 | INFO     | ..............................
[2025-11-23 21:50:08] 2025-11-24 02:49:36,773 | INFO     | 
[2025-11-23 21:50:08] 2025-11-24 02:49:36,773 | INFO     | job summary report
[2025-11-23 21:50:08] 2025-11-24 02:49:36,773 | INFO     | --------------------------------------------------
[2025-11-23 21:50:08] 2025-11-24 02:49:36,773 | INFO     | PanDA job id: 6895351514
[2025-11-23 21:50:08] 2025-11-24 02:49:36,773 | INFO     | task id: 47556137
[2025-11-23 21:50:08] 2025-11-24 02:49:36,774 | INFO     | errors: (none)
[2025-11-23 21:50:08] 2025-11-24 02:49:36,774 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 21:50:08] 2025-11-24 02:49:36,774 | INFO     | pilot state: finished 
[2025-11-23 21:50:08] 2025-11-24 02:49:36,774 | INFO     | transexitcode: 0
[2025-11-23 21:50:08] 2025-11-24 02:49:36,774 | INFO     | exeerrorcode: 0
[2025-11-23 21:50:08] 2025-11-24 02:49:36,774 | INFO     | exeerrordiag: 
[2025-11-23 21:50:08] 2025-11-24 02:49:36,774 | INFO     | exitcode: 0
[2025-11-23 21:50:08] 2025-11-24 02:49:36,774 | INFO     | exitmsg: OK
[2025-11-23 21:50:08] 2025-11-24 02:49:36,774 | INFO     | cpuconsumptiontime: 267476 s
[2025-11-23 21:50:08] 2025-11-24 02:49:36,774 | INFO     | nevents: 1000
[2025-11-23 21:50:08] 2025-11-24 02:49:36,775 | INFO     | neventsw: 0
[2025-11-23 21:50:08] 2025-11-24 02:49:36,775 | INFO     | pid: 10901
[2025-11-23 21:50:08] 2025-11-24 02:49:36,775 | INFO     | pgrp: 10901
[2025-11-23 21:50:08] 2025-11-24 02:49:36,775 | INFO     | corecount: 12
[2025-11-23 21:50:08] 2025-11-24 02:49:36,775 | INFO     | event service: False
[2025-11-23 21:50:08] 2025-11-24 02:49:36,775 | INFO     | sizes: {0: 2298801, 5: 2299063, 11: 2299119, 23165: 2334993, 23168: 2344043, 23175: 2344233}
[2025-11-23 21:50:08] 2025-11-24 02:49:36,775 | INFO     | --------------------------------------------------
[2025-11-23 21:50:08] 2025-11-24 02:49:36,775 | INFO     | 
[2025-11-23 21:50:08] 2025-11-24 02:49:36,775 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-23 21:50:08] 2025-11-24 02:49:36,799 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 21:50:08] 2025-11-24 02:49:36,800 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 21:50:08] 2025-11-24 02:49:36,800 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 21:50:08] 2025-11-24 02:49:36,800 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 21:50:08] 2025-11-24 02:49:36,800 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 21:50:08] 2025-11-24 02:49:36,800 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 21:50:08] 2025-11-24 02:49:36,801 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 21:50:08] 2025-11-24 02:49:36,801 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 21:50:08] 2025-11-24 02:49:36,801 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 21:50:08] 2025-11-24 02:49:36,801 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 21:50:08] 2025-11-24 02:49:36,801 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 21:50:08] 2025-11-24 02:49:36,801 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 21:50:08] 2025-11-24 02:49:36,802 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 21:50:08] 2025-11-24 02:49:36,802 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 21:50:08] 2025-11-24 02:49:36,802 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 21:50:08] 2025-11-24 02:49:36,802 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 21:50:08] 2025-11-24 02:49:36,802 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 21:50:08] 2025-11-24 02:49:36,802 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 21:50:08] 2025-11-24 02:49:36,802 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 21:50:08] 2025-11-24 02:49:36,803 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 21:50:08] 2025-11-24 02:49:36,803 | INFO     | job 6895351514 has completed (purged errors)
[2025-11-23 21:50:08] 2025-11-24 02:49:36,803 | INFO     | overall cleanup function is called
[2025-11-23 21:50:08] 2025-11-24 02:49:37,819 | INFO     | --- collectZombieJob: --- 10, [10901]
[2025-11-23 21:50:08] 2025-11-24 02:49:37,820 | INFO     | zombie collector waiting for pid 10901
[2025-11-23 21:50:08] 2025-11-24 02:49:37,820 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 21:50:08] 2025-11-24 02:49:37,820 | INFO     | collected zombie processes
[2025-11-23 21:50:08] 2025-11-24 02:49:37,820 | INFO     | will attempt to kill all subprocesses of pid=10901
[2025-11-23 21:50:08] 2025-11-24 02:49:37,909 | INFO     | process IDs to be killed: [10901] (in reverse order)
[2025-11-23 21:50:08] 2025-11-24 02:49:37,961 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 21:50:08] 2025-11-24 02:49:37,961 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 21:50:08] 2025-11-24 02:49:37,964 | INFO     | did not find any defunct processes belonging to 10901
[2025-11-23 21:50:08] 2025-11-24 02:49:37,967 | INFO     | did not find any defunct processes belonging to 10901
[2025-11-23 21:50:08] 2025-11-24 02:49:37,969 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 21:50:08] 2025-11-24 02:49:37,969 | INFO     | ready for new job
[2025-11-23 21:50:08] 2025-11-24 02:49:37,969 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 21:50:08] 2025-11-24 02:49:37,970 | INFO     | ***************************************
[2025-11-23 21:50:08] 2025-11-24 02:49:37,971 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 21:50:08] 2025-11-24 02:49:37,971 | INFO     | ***************************************
[2025-11-23 21:50:08] 2025-11-24 02:49:37,971 | INFO     | 
[2025-11-23 21:50:08] 2025-11-24 02:49:37,971 | INFO     | architecture information:
[2025-11-23 21:50:08] 2025-11-24 02:49:37,972 | INFO     | executing command: cat /etc/os-release
[2025-11-23 21:50:08] 2025-11-24 02:49:37,988 | INFO     | cat /etc/os-release:
[2025-11-23 21:50:08] NAME="CentOS Linux"
[2025-11-23 21:50:08] VERSION="7 (Core)"
[2025-11-23 21:50:08] ID="centos"
[2025-11-23 21:50:08] ID_LIKE="rhel fedora"
[2025-11-23 21:50:08] VERSION_ID="7"
[2025-11-23 21:50:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 21:50:08] ANSI_COLOR="0;31"
[2025-11-23 21:50:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 21:50:08] HOME_URL="https://www.centos.org/"
[2025-11-23 21:50:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 21:50:08] 
[2025-11-23 21:50:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 21:50:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 21:50:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 21:50:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 21:50:08] 
[2025-11-23 21:50:08] 2025-11-24 02:49:37,988 | INFO     | ***************************************
[2025-11-23 21:50:08] 2025-11-24 02:49:38,491 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-23 21:50:08] 2025-11-24 02:49:38,509 | INFO     | sufficient remaining disk space (17468227584 B)
[2025-11-23 21:50:08] 2025-11-24 02:49:38,509 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 21:50:08] 2025-11-24 02:49:38,509 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 21:50:08] 2025-11-24 02:49:38,510 | INFO     | update_server=False
[2025-11-23 21:50:08] 2025-11-24 02:49:38,510 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 21:50:08] 2025-11-24 02:49:38,510 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 21:50:08] 2025-11-24 02:49:38,510 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 21:50:08] 2025-11-24 02:49:38,580 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-23 21:50:08] 2025-11-24 02:49:38,580 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-23 21:50:08] 2025-11-24 02:49:38,590 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 21:50:08] 2025-11-24 02:49:38,590 | INFO     | will abort loop
[2025-11-23 21:50:08] 2025-11-24 02:49:38,696 | INFO     | all data control threads have been joined
[2025-11-23 21:50:08] 2025-11-24 02:49:39,243 | INFO     | all job control threads have been joined
[2025-11-23 21:50:08] 2025-11-24 02:49:39,437 | INFO     | all payload control threads have been joined
[2025-11-23 21:50:08] 2025-11-24 02:49:39,515 | INFO     | [job] retrieve thread has finished
[2025-11-23 21:50:08] 2025-11-24 02:49:39,516 | INFO     | [job] queue monitor thread has finished
[2025-11-23 21:50:08] 2025-11-24 02:49:39,595 | INFO     | [job] job monitor thread has finished
[2025-11-23 21:50:08] 2025-11-24 02:49:39,681 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 21:50:08] 2025-11-24 02:49:39,700 | INFO     | [data] control thread has finished
[2025-11-23 21:50:08] 2025-11-24 02:49:40,100 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 21:50:08] 2025-11-24 02:49:40,164 | INFO     | [payload] validate_post thread has finished
[2025-11-23 21:50:08] 2025-11-24 02:49:40,195 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 21:50:08] 2025-11-24 02:49:40,248 | INFO     | [job] control thread has finished
[2025-11-23 21:50:08] 2025-11-24 02:49:40,442 | INFO     | [payload] control thread has finished
[2025-11-23 21:50:08] 2025-11-24 02:49:40,514 | INFO     | [data] copytool_out thread has finished
[2025-11-23 21:50:08] 2025-11-24 02:49:40,605 | INFO     | [data] copytool_in thread has finished
[2025-11-23 21:50:08] 2025-11-24 02:49:40,660 | INFO     | [job] validate thread has finished
[2025-11-23 21:50:08] 2025-11-24 02:49:40,666 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 21:50:08] 2025-11-24 02:49:40,784 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 21:50:08] 2025-11-24 02:49:40,831 | INFO     | [payload] failed_post thread has finished
[2025-11-23 21:50:08] 2025-11-24 02:49:43,492 | INFO     | [monitor] cgroup control has ended
[2025-11-23 21:50:08] 2025-11-24 02:49:44,106 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 21:50:08] 2025-11-24 02:49:45,841 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140112708740928)>', '<ExcThread(monitor, started 140111765305088)>']
[2025-11-23 21:50:08] 2025-11-24 02:49:50,867 | INFO     | all workflow threads have been joined
[2025-11-23 21:50:08] 2025-11-24 02:49:50,867 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 21:50:08] 2025-11-24 02:49:50,868 | INFO     | traces error code: 0
[2025-11-23 21:50:08] 2025-11-24 02:49:50,868 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 21:50:08] 2025-11-24 02:50:08,157 | INFO     | PID=4380 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-23 21:50:08] 2025-11-24 02:50:08,158 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 21:50:08] 2025-11-24 02:50:08,158 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 21:50:08] 2025-11-24 02:50:08,158 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 21:50:08] 2025-11-24 02:50:08,158 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 21:50:08] 2025-11-24 02:50:08,158 | INFO     | [monitor] control thread has ended
[2025-11-23 21:50:08] 2025-11-24 02:50:08,253 [wrapper] ==== pilot stdout END ====
[2025-11-23 21:50:08] 2025-11-24 02:50:08,256 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 21:50:08] 2025-11-24 02:50:08,260 [wrapper] pilotpid: 4380
[2025-11-23 21:50:08] 2025-11-24 02:50:08,264 [wrapper] Pilot exit status: 0
[2025-11-23 21:50:08] 2025-11-24 02:50:08,277 [wrapper] pandaids: 6895351514
[2025-11-23 21:50:08] 2025-11-24 02:50:08,315 [wrapper] cleanup supervisor_pilot 25579 4382
[2025-11-23 21:50:08] 2025-11-24 02:50:08,319 [wrapper] Test setup, not cleaning
[2025-11-23 21:50:08] 2025-11-24 02:50:08,322 [wrapper] apfmon messages muted
[2025-11-23 21:50:08] 2025-11-24 02:50:08,326 [wrapper] ==== wrapper stdout END ====
[2025-11-23 21:50:08] 2025-11-24 02:50:08,330 [wrapper] ==== wrapper stderr END ====
[2025-11-23 21:50:08]  *** Error codes and diagnostics ***
[2025-11-23 21:50:08]     "exeErrorCode": 0,
[2025-11-23 21:50:08]     "exeErrorDiag": "",
[2025-11-23 21:50:08]     "pilotErrorCode": 0,
[2025-11-23 21:50:08]     "pilotErrorDiag": "",
[2025-11-23 21:50:08]  *** Listing of results directory ***
[2025-11-23 21:50:08] total 1315248
[2025-11-23 21:50:08] -rw-r--r-- 1 boincer umatlas    576529 Nov 22 19:28 pilot3.tar.gz
[2025-11-23 21:50:08] -rwx------ 1 boincer umatlas     36292 Nov 22 19:48 runpilot2-wrapper.sh
[2025-11-23 21:50:08] -rw-r--r-- 1 boincer umatlas      5112 Nov 22 19:48 queuedata.json
[2025-11-23 21:50:08] -rw-r--r-- 1 boincer umatlas       100 Nov 23 15:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 21:50:08] -rwxr-xr-x 1 boincer umatlas      7986 Nov 23 15:22 run_atlas
[2025-11-23 21:50:08] -rw-r--r-- 1 boincer umatlas       105 Nov 23 15:22 job.xml
[2025-11-23 21:50:08] -rw-r--r-- 2 boincer umatlas 410122476 Nov 23 15:22 EVNT.47483658._000555.pool.root.1
[2025-11-23 21:50:08] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 15:22 start_atlas.sh
[2025-11-23 21:50:08] drwxrwx--x 2 boincer umatlas      4096 Nov 23 15:22 shared
[2025-11-23 21:50:08] -rw-r--r-- 2 boincer umatlas    590099 Nov 23 15:22 input.tar.gz
[2025-11-23 21:50:08] -rw-r--r-- 1 boincer umatlas         0 Nov 23 15:22 boinc_lockfile
[2025-11-23 21:50:08] -rw-r--r-- 1 boincer umatlas      2783 Nov 23 15:22 pandaJob.out
[2025-11-23 21:50:08] -rw------- 1 boincer umatlas        57 Nov 23 15:22 setup.sh.local
[2025-11-23 21:50:08] -rw------- 1 boincer umatlas    989786 Nov 23 15:23 agis_schedconf.cvmfs.json
[2025-11-23 21:50:08] drwx------ 5 boincer umatlas      4096 Nov 23 15:23 pilot3
[2025-11-23 21:50:08] -rw-r--r-- 1 boincer umatlas       533 Nov 23 21:40 boinc_task_state.xml
[2025-11-23 21:50:08] -rw-r--r-- 1 boincer umatlas      5955 Nov 23 21:47 init_data.xml
[2025-11-23 21:50:08] -rw------- 1 boincer umatlas 922003303 Nov 23 21:48 HITS.47556137._005501.pool.root.1
[2025-11-23 21:50:08] -rw------- 1 boincer umatlas      1075 Nov 23 21:49 memory_monitor_summary.json
[2025-11-23 21:50:08] -rw------- 1 boincer umatlas   1526164 Nov 23 21:49 agis_ddmendpoints.agis.ALL.json
[2025-11-23 21:50:08] -rw------- 1 boincer umatlas   2136759 Nov 23 21:49 log.47556137._005501.job.log.tgz.1
[2025-11-23 21:50:08] -rw------- 1 boincer umatlas      8677 Nov 23 21:49 heartbeat.json
[2025-11-23 21:50:08] -rw-r--r-- 1 boincer umatlas      8192 Nov 23 21:50 boinc_mmap_file
[2025-11-23 21:50:08] -rw-r--r-- 1 boincer umatlas        29 Nov 23 21:50 wrapper_checkpoint.txt
[2025-11-23 21:50:08] -rw------- 1 boincer umatlas        95 Nov 23 21:50 pilot_heartbeat.json
[2025-11-23 21:50:08] -rw------- 1 boincer umatlas       744 Nov 23 21:50 pilotlog.txt
[2025-11-23 21:50:08] -rw------- 1 boincer umatlas   3245869 Nov 23 21:50 log.47556137._005501.job.log.1
[2025-11-23 21:50:08] -rw------- 1 boincer umatlas       353 Nov 23 21:50 output.list
[2025-11-23 21:50:08] -rw-r--r-- 1 boincer umatlas       620 Nov 23 21:50 runtime_log
[2025-11-23 21:50:08] -rw------- 1 boincer umatlas   5406720 Nov 23 21:50 result.tar.gz
[2025-11-23 21:50:08] -rw-r--r-- 1 boincer umatlas      9345 Nov 23 21:50 runtime_log.err
[2025-11-23 21:50:08] -rw------- 1 boincer umatlas       669 Nov 23 21:50 E0OODmGSDh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm6TKKDmPJVl1m.diag
[2025-11-23 21:50:08] -rw-r--r-- 1 boincer umatlas     21268 Nov 23 21:50 stderr.txt
[2025-11-23 21:50:08] HITS file was successfully produced:
[2025-11-23 21:50:08] -rw------- 1 boincer umatlas 922003303 Nov 23 21:48 shared/HITS.pool.root.1
[2025-11-23 21:50:08]  *** Contents of shared directory: ***
[2025-11-23 21:50:08] total 1306788
[2025-11-23 21:50:08] -rw-r--r-- 2 boincer umatlas 410122476 Nov 23 15:22 ATLAS.root_0
[2025-11-23 21:50:08] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 15:22 start_atlas.sh
[2025-11-23 21:50:08] -rw-r--r-- 2 boincer umatlas    590099 Nov 23 15:22 input.tar.gz
[2025-11-23 21:50:08] -rw------- 1 boincer umatlas 922003303 Nov 23 21:48 HITS.pool.root.1
[2025-11-23 21:50:08] -rw------- 1 boincer umatlas   5406720 Nov 23 21:50 result.tar.gz
21:50:10 (539): run_atlas exited; CPU time 263879.852568
21:50:10 (539): called boinc_finish(0)

</stderr_txt>
]]>

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