Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:54:55 (1360134): wrapper (7.7.26015): starting
11:54:55 (1360134): wrapper: running run_atlas (--nthreads 6)
[2025-11-24 11:54:55] Arguments: --nthreads 6
[2025-11-24 11:54:55] Threads: 6
[2025-11-24 11:54:55] Checking for CVMFS
[2025-11-24 11:54:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 11:54:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 11:54:55] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 11:54:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 11:54:56] 2.13.3.0 900246 2017 72648 153229 1 90 18376522 20971520 916 130560 0 1575976 99.989 70022 14 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-11-24 11:54:56] CVMFS is ok
[2025-11-24 11:54:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 11:54:56] Checking for apptainer binary...
[2025-11-24 11:54:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 11:54:56] Running /usr/bin/apptainer --version
[2025-11-24 11:54:56] apptainer version 1.4.4-1.el9
[2025-11-24 11:54:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 11:54:56] testio005
[2025-11-24 11:54:56] apptainer works
[2025-11-24 11:54:56] Set ATHENA_PROC_NUMBER=6
[2025-11-24 11:54:56] Set ATHENA_CORE_NUMBER=6
[2025-11-24 11:54:56] Starting ATLAS job with PandaID=6893864384
[2025-11-24 11:54:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 23:03:22]  *** The last 200 lines of the pilot log: ***
[2025-11-24 23:03:22] 2025-11-24 14:02:31,918 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 23:03:22] 2025-11-24 14:02:31,918 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 23:03:22] 2025-11-24 14:02:31,928 | INFO     | fitting pss+swap vs Time
[2025-11-24 23:03:22] 2025-11-24 14:02:31,928 | INFO     | sum of square deviations: 87536519513.99403
[2025-11-24 23:03:22] 2025-11-24 14:02:31,937 | INFO     | sum of deviations: 928543454701.7734
[2025-11-24 23:03:22] 2025-11-24 14:02:31,937 | INFO     | mean x: 1763972912.503049
[2025-11-24 23:03:22] 2025-11-24 14:02:31,937 | INFO     | mean y: 2654386.112804878
[2025-11-24 23:03:22] 2025-11-24 14:02:31,937 | INFO     | intersect: -18708684735.773155
[2025-11-24 23:03:22] 2025-11-24 14:02:31,938 | INFO     | chi2: 10.126977433366621
[2025-11-24 23:03:22] 2025-11-24 14:02:31,939 | INFO     | sum of square deviations: 85550138693.99362
[2025-11-24 23:03:22] 2025-11-24 14:02:31,947 | INFO     | sum of deviations: 1124291476150.6577
[2025-11-24 23:03:22] 2025-11-24 14:02:31,948 | INFO     | mean x: 1763972760.0030723
[2025-11-24 23:03:22] 2025-11-24 14:02:31,948 | INFO     | mean y: 2669417.1705069123
[2025-11-24 23:03:22] 2025-11-24 14:02:31,948 | INFO     | intersect: -23179286433.6228
[2025-11-24 23:03:22] 2025-11-24 14:02:31,949 | INFO     | chi2: 7.145387912533278
[2025-11-24 23:03:22] 2025-11-24 14:02:31,949 | INFO     | current chi2=7.145387912533278 (change=29.44204764404359 %)
[2025-11-24 23:03:22] 2025-11-24 14:02:31,949 | INFO     | sum of square deviations: 83594037511.49379
[2025-11-24 23:03:22] 2025-11-24 14:02:31,958 | INFO     | sum of deviations: 1246823261871.777
[2025-11-24 23:03:22] 2025-11-24 14:02:31,958 | INFO     | mean x: 1763972607.5030959
[2025-11-24 23:03:22] 2025-11-24 14:02:31,958 | INFO     | mean y: 2678942.1114551085
[2025-11-24 23:03:22] 2025-11-24 14:02:31,958 | INFO     | intersect: -26307356388.30397
[2025-11-24 23:03:22] 2025-11-24 14:02:31,959 | INFO     | chi2: 5.380970943506008
[2025-11-24 23:03:22] 2025-11-24 14:02:31,959 | INFO     | current chi2=5.380970943506008 (change=24.6930886135995 %)
[2025-11-24 23:03:22] 2025-11-24 14:02:31,959 | INFO     | right removable region: 645
[2025-11-24 23:03:22] 2025-11-24 14:02:31,960 | INFO     | sum of square deviations: 85550137473.99362
[2025-11-24 23:03:22] 2025-11-24 14:02:31,968 | INFO     | sum of deviations: 723117637300.9059
[2025-11-24 23:03:22] 2025-11-24 14:02:31,969 | INFO     | mean x: 1763973065.0030723
[2025-11-24 23:03:22] 2025-11-24 14:02:31,969 | INFO     | mean y: 2670149.5468509984
[2025-11-24 23:03:22] 2025-11-24 14:02:31,969 | INFO     | intersect: -14907417346.399212
[2025-11-24 23:03:22] 2025-11-24 14:02:31,970 | INFO     | chi2: 7.167103427938885
[2025-11-24 23:03:22] 2025-11-24 14:02:31,970 | INFO     | current chi2=7.167103427938885 (change=29.227615296894687 %)
[2025-11-24 23:03:22] 2025-11-24 14:02:31,970 | INFO     | sum of square deviations: 83594035071.49379
[2025-11-24 23:03:22] 2025-11-24 14:02:31,979 | INFO     | sum of deviations: 555935511755.902
[2025-11-24 23:03:22] 2025-11-24 14:02:31,979 | INFO     | mean x: 1763973217.5030959
[2025-11-24 23:03:22] 2025-11-24 14:02:31,979 | INFO     | mean y: 2683179.29876161
[2025-11-24 23:03:22] 2025-11-24 14:02:31,979 | INFO     | intersect: -11728481042.617111
[2025-11-24 23:03:22] 2025-11-24 14:02:31,980 | INFO     | chi2: 5.347927435282631
[2025-11-24 23:03:22] 2025-11-24 14:02:31,980 | INFO     | current chi2=5.347927435282631 (change=25.382304175557476 %)
[2025-11-24 23:03:22] 2025-11-24 14:02:31,981 | INFO     | sum of square deviations: 81667979743.9938
[2025-11-24 23:03:22] 2025-11-24 14:02:31,989 | INFO     | sum of deviations: 495134519187.90906
[2025-11-24 23:03:22] 2025-11-24 14:02:31,989 | INFO     | mean x: 1763973370.0031202
[2025-11-24 23:03:22] 2025-11-24 14:02:31,989 | INFO     | mean y: 2687985.546021841
[2025-11-24 23:03:22] 2025-11-24 14:02:31,990 | INFO     | intersect: -10691884222.00273
[2025-11-24 23:03:22] 2025-11-24 14:02:31,990 | INFO     | chi2: 5.115567252080653
[2025-11-24 23:03:22] 2025-11-24 14:02:31,990 | INFO     | current chi2=5.115567252080653 (change=4.3448641742779746 %)
[2025-11-24 23:03:22] 2025-11-24 14:02:31,990 | INFO     | left removable region: 30
[2025-11-24 23:03:22] 2025-11-24 14:02:31,991 | INFO     | sum of square deviations: 72127856195.9932
[2025-11-24 23:03:22] 2025-11-24 14:02:31,999 | INFO     | sum of deviations: 711866627304.6263
[2025-11-24 23:03:22] 2025-11-24 14:02:31,999 | INFO     | mean x: 1763973492.003252
[2025-11-24 23:03:22] 2025-11-24 14:02:31,999 | INFO     | mean y: 2721750.18699187
[2025-11-24 23:03:22] 2025-11-24 14:02:31,999 | INFO     | intersect: -17406832985.433666
[2025-11-24 23:03:22] 2025-11-24 14:02:32,000 | INFO     | chi2: 0.2559009778257916
[2025-11-24 23:03:22] 2025-11-24 14:02:32,000 | INFO     | current memory leak: 9.87 B/s (using 615 data points, chi2=0.26)
[2025-11-24 23:03:22] 2025-11-24 14:02:32,001 | INFO     | could have reported an average CPU frequency of 3300 MHz (25 samples)
[2025-11-24 23:03:22] 2025-11-24 14:02:32,001 | INFO     | ..............................
[2025-11-24 23:03:22] 2025-11-24 14:02:32,001 | INFO     | . Timing measurements:
[2025-11-24 23:03:22] 2025-11-24 14:02:32,001 | INFO     | . get job = 0 s
[2025-11-24 23:03:22] 2025-11-24 14:02:32,001 | INFO     | . initial setup = 5 s
[2025-11-24 23:03:22] 2025-11-24 14:02:32,001 | INFO     | . payload setup = 5 s
[2025-11-24 23:03:22] 2025-11-24 14:02:32,001 | INFO     | . stage-in = 0 s
[2025-11-24 23:03:22] 2025-11-24 14:02:32,001 | INFO     | . payload execution = 40005 s
[2025-11-24 23:03:22] 2025-11-24 14:02:32,002 | INFO     | . stage-out = 6 s
[2025-11-24 23:03:22] 2025-11-24 14:02:32,002 | INFO     | . log creation = 0 s
[2025-11-24 23:03:22] 2025-11-24 14:02:32,002 | INFO     | ..............................
[2025-11-24 23:03:22] 2025-11-24 14:02:32,089 | INFO     | 
[2025-11-24 23:03:22] 2025-11-24 14:02:32,089 | INFO     | job summary report
[2025-11-24 23:03:22] 2025-11-24 14:02:32,089 | INFO     | --------------------------------------------------
[2025-11-24 23:03:22] 2025-11-24 14:02:32,089 | INFO     | PanDA job id: 6893864384
[2025-11-24 23:03:22] 2025-11-24 14:02:32,090 | INFO     | task id: 47523449
[2025-11-24 23:03:22] 2025-11-24 14:02:32,090 | INFO     | errors: (none)
[2025-11-24 23:03:22] 2025-11-24 14:02:32,090 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 23:03:22] 2025-11-24 14:02:32,090 | INFO     | pilot state: finished 
[2025-11-24 23:03:22] 2025-11-24 14:02:32,090 | INFO     | transexitcode: 0
[2025-11-24 23:03:22] 2025-11-24 14:02:32,090 | INFO     | exeerrorcode: 0
[2025-11-24 23:03:22] 2025-11-24 14:02:32,091 | INFO     | exeerrordiag: 
[2025-11-24 23:03:22] 2025-11-24 14:02:32,091 | INFO     | exitcode: 0
[2025-11-24 23:03:22] 2025-11-24 14:02:32,091 | INFO     | exitmsg: OK
[2025-11-24 23:03:22] 2025-11-24 14:02:32,091 | INFO     | cpuconsumptiontime: 225001 s
[2025-11-24 23:03:22] 2025-11-24 14:02:32,091 | INFO     | nevents: 1000
[2025-11-24 23:03:22] 2025-11-24 14:02:32,091 | INFO     | neventsw: 0
[2025-11-24 23:03:22] 2025-11-24 14:02:32,091 | INFO     | pid: 1370597
[2025-11-24 23:03:22] 2025-11-24 14:02:32,092 | INFO     | pgrp: 1370597
[2025-11-24 23:03:22] 2025-11-24 14:02:32,092 | INFO     | corecount: 6
[2025-11-24 23:03:22] 2025-11-24 14:02:32,092 | INFO     | event service: False
[2025-11-24 23:03:22] 2025-11-24 14:02:32,092 | INFO     | sizes: {0: 2298806, 1: 2298806, 5: 2299096, 11: 2299152, 40014: 2342301, 40022: 2352270, 40028: 2352524}
[2025-11-24 23:03:22] 2025-11-24 14:02:32,092 | INFO     | --------------------------------------------------
[2025-11-24 23:03:22] 2025-11-24 14:02:32,092 | INFO     | 
[2025-11-24 23:03:22] 2025-11-24 14:02:32,092 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-11-24 23:03:22] 2025-11-24 14:02:32,110 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 23:03:22] 2025-11-24 14:02:32,110 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 23:03:22] 2025-11-24 14:02:32,110 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 23:03:22] 2025-11-24 14:02:32,110 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 23:03:22] 2025-11-24 14:02:32,110 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 23:03:22] 2025-11-24 14:02:32,111 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 23:03:22] 2025-11-24 14:02:32,111 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 23:03:22] 2025-11-24 14:02:32,111 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 23:03:22] 2025-11-24 14:02:32,111 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 23:03:22] 2025-11-24 14:02:32,111 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 23:03:22] 2025-11-24 14:02:32,111 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 23:03:22] 2025-11-24 14:02:32,111 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 23:03:22] 2025-11-24 14:02:32,111 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 23:03:22] 2025-11-24 14:02:32,111 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 23:03:22] 2025-11-24 14:02:32,111 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 23:03:22] 2025-11-24 14:02:32,112 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 23:03:22] 2025-11-24 14:02:32,112 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 23:03:22] 2025-11-24 14:02:32,112 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 23:03:22] 2025-11-24 14:02:32,112 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 23:03:22] 2025-11-24 14:02:32,112 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 23:03:22] 2025-11-24 14:02:32,112 | INFO     | job 6893864384 has completed (purged errors)
[2025-11-24 23:03:22] 2025-11-24 14:02:32,112 | INFO     | overall cleanup function is called
[2025-11-24 23:03:22] 2025-11-24 14:02:33,129 | INFO     | --- collectZombieJob: --- 10, [1370597]
[2025-11-24 23:03:22] 2025-11-24 14:02:33,129 | INFO     | zombie collector waiting for pid 1370597
[2025-11-24 23:03:22] 2025-11-24 14:02:33,129 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 23:03:22] 2025-11-24 14:02:33,129 | INFO     | collected zombie processes
[2025-11-24 23:03:22] 2025-11-24 14:02:33,129 | INFO     | will attempt to kill all subprocesses of pid=1370597
[2025-11-24 23:03:22] 2025-11-24 14:02:33,236 | INFO     | process IDs to be killed: [1370597] (in reverse order)
[2025-11-24 23:03:22] 2025-11-24 14:02:33,278 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 23:03:22] 2025-11-24 14:02:33,278 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 23:03:22] 2025-11-24 14:02:33,282 | INFO     | did not find any defunct processes belonging to 1370597
[2025-11-24 23:03:22] 2025-11-24 14:02:33,286 | INFO     | did not find any defunct processes belonging to 1370597
[2025-11-24 23:03:22] 2025-11-24 14:02:33,287 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 23:03:22] 2025-11-24 14:02:33,287 | INFO     | ready for new job
[2025-11-24 23:03:22] 2025-11-24 14:02:33,287 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 23:03:22] 2025-11-24 14:02:33,290 | INFO     | ***************************************
[2025-11-24 23:03:22] 2025-11-24 14:02:33,290 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 23:03:22] 2025-11-24 14:02:33,290 | INFO     | ***************************************
[2025-11-24 23:03:22] 2025-11-24 14:02:33,290 | INFO     | 
[2025-11-24 23:03:22] 2025-11-24 14:02:33,291 | INFO     | architecture information:
[2025-11-24 23:03:22] 2025-11-24 14:02:33,292 | INFO     | executing command: cat /etc/os-release
[2025-11-24 23:03:22] 2025-11-24 14:02:33,306 | INFO     | cat /etc/os-release:
[2025-11-24 23:03:22] NAME="CentOS Linux"
[2025-11-24 23:03:22] VERSION="7 (Core)"
[2025-11-24 23:03:22] ID="centos"
[2025-11-24 23:03:22] ID_LIKE="rhel fedora"
[2025-11-24 23:03:22] VERSION_ID="7"
[2025-11-24 23:03:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 23:03:22] ANSI_COLOR="0;31"
[2025-11-24 23:03:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 23:03:22] HOME_URL="https://www.centos.org/"
[2025-11-24 23:03:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 23:03:22] 
[2025-11-24 23:03:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 23:03:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 23:03:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 23:03:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 23:03:22] 
[2025-11-24 23:03:22] 2025-11-24 14:02:33,306 | INFO     | ***************************************
[2025-11-24 23:03:22] 2025-11-24 14:02:33,808 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-11-24 23:03:22] 2025-11-24 14:02:33,824 | INFO     | sufficient remaining disk space (91691679744 B)
[2025-11-24 23:03:22] 2025-11-24 14:02:33,824 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 23:03:22] 2025-11-24 14:02:33,824 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 23:03:22] 2025-11-24 14:02:33,825 | INFO     | update_server=False
[2025-11-24 23:03:22] 2025-11-24 14:02:33,825 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 23:03:22] 2025-11-24 14:02:33,825 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 23:03:22] 2025-11-24 14:02:33,825 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 23:03:22] 2025-11-24 14:02:33,825 | INFO     | aborting loop
[2025-11-24 23:03:22] 2025-11-24 14:02:33,989 | INFO     | all payload control threads have been joined
[2025-11-24 23:03:22] 2025-11-24 14:02:34,023 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 23:03:22] 2025-11-24 14:02:34,185 | INFO     | all job control threads have been joined
[2025-11-24 23:03:22] 2025-11-24 14:02:34,431 | INFO     | all data control threads have been joined
[2025-11-24 23:03:22] 2025-11-24 14:02:34,830 | INFO     | [job] retrieve thread has finished
[2025-11-24 23:03:22] 2025-11-24 14:02:34,830 | INFO     | [job] job monitor thread has finished
[2025-11-24 23:03:22] 2025-11-24 14:02:34,830 | INFO     | [job] queue monitor thread has finished
[2025-11-24 23:03:22] 2025-11-24 14:02:34,995 | INFO     | [payload] control thread has finished
[2025-11-24 23:03:22] 2025-11-24 14:02:35,051 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 23:03:22] 2025-11-24 14:02:35,178 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 23:03:22] 2025-11-24 14:02:35,190 | INFO     | [job] control thread has finished
[2025-11-24 23:03:22] 2025-11-24 14:02:35,204 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 23:03:22] 2025-11-24 14:02:35,285 | INFO     | [job] validate thread has finished
[2025-11-24 23:03:22] 2025-11-24 14:02:35,354 | INFO     | [payload] validate_post thread has finished
[2025-11-24 23:03:22] 2025-11-24 14:02:35,433 | INFO     | [data] control thread has finished
[2025-11-24 23:03:22] 2025-11-24 14:02:35,764 | INFO     | [payload] failed_post thread has finished
[2025-11-24 23:03:22] 2025-11-24 14:02:35,788 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 23:03:22] 2025-11-24 14:02:36,028 | INFO     | [data] copytool_out thread has finished
[2025-11-24 23:03:22] 2025-11-24 14:02:36,232 | INFO     | [data] copytool_in thread has finished
[2025-11-24 23:03:22] 2025-11-24 14:02:36,611 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 23:03:22] 2025-11-24 14:02:40,617 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 23:03:22] 2025-11-24 14:03:03,501 | INFO     | PID=1363897 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 23:03:22] 2025-11-24 14:03:03,501 | INFO     | .. there are 2 such processes running
[2025-11-24 23:03:22] 2025-11-24 14:03:03,502 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 23:03:22] 2025-11-24 14:03:03,502 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 23:03:22] 2025-11-24 14:03:03,502 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 23:03:22] 2025-11-24 14:03:16,246 | INFO     | [monitor] cgroup control has ended
[2025-11-24 23:03:22] 2025-11-24 14:03:16,831 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140426360215360)>', '<ExcThread(monitor, started 140425985758976)>']
[2025-11-24 23:03:22] 2025-11-24 14:03:17,568 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 23:03:22] 2025-11-24 14:03:17,568 | INFO     | [monitor] control thread has ended
[2025-11-24 23:03:22] 2025-11-24 14:03:21,835 | INFO     | all workflow threads have been joined
[2025-11-24 23:03:22] 2025-11-24 14:03:21,835 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 23:03:22] 2025-11-24 14:03:21,835 | INFO     | traces error code: 0
[2025-11-24 23:03:22] 2025-11-24 14:03:21,836 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 23:03:22] 2025-11-24 14:03:21,952 [wrapper] ==== pilot stdout END ====
[2025-11-24 23:03:22] 2025-11-24 14:03:21,954 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 23:03:22] 2025-11-24 14:03:21,957 [wrapper] pilotpid: 1363897
[2025-11-24 23:03:22] 2025-11-24 14:03:21,959 [wrapper] Pilot exit status: 0
[2025-11-24 23:03:22] 2025-11-24 14:03:21,967 [wrapper] pandaids: 6893864384
[2025-11-24 23:03:22] 2025-11-24 14:03:21,994 [wrapper] cleanup supervisor_pilot 1499145 1363898
[2025-11-24 23:03:22] 2025-11-24 14:03:21,997 [wrapper] Test setup, not cleaning
[2025-11-24 23:03:22] 2025-11-24 14:03:21,999 [wrapper] apfmon messages muted
[2025-11-24 23:03:22] 2025-11-24 14:03:22,002 [wrapper] ==== wrapper stdout END ====
[2025-11-24 23:03:22] 2025-11-24 14:03:22,004 [wrapper] ==== wrapper stderr END ====
[2025-11-24 23:03:22]  *** Error codes and diagnostics ***
[2025-11-24 23:03:22]     "exeErrorCode": 0,
[2025-11-24 23:03:22]     "exeErrorDiag": "",
[2025-11-24 23:03:22]     "pilotErrorCode": 0,
[2025-11-24 23:03:22]     "pilotErrorDiag": "",
[2025-11-24 23:03:22]  *** Listing of results directory ***
[2025-11-24 23:03:22] total 1319408
[2025-11-24 23:03:22] -rw-r--r--. 1 boinc boinc    576529 Nov 20 23:06 pilot3.tar.gz
[2025-11-24 23:03:22] -rw-r--r--. 1 boinc boinc      5112 Nov 20 23:17 queuedata.json
[2025-11-24 23:03:22] -rwx------. 1 boinc boinc     36292 Nov 20 23:19 runpilot2-wrapper.sh
[2025-11-24 23:03:22] -rw-r--r--. 1 boinc boinc       100 Nov 24 11:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 23:03:22] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 11:54 run_atlas
[2025-11-24 23:03:22] -rw-r--r--. 1 boinc boinc       105 Nov 24 11:54 job.xml
[2025-11-24 23:03:22] -rw-r--r--. 2 boinc boinc 412064519 Nov 24 11:54 EVNT.47493127._000603.pool.root.1
[2025-11-24 23:03:22] -rw-r--r--. 2 boinc boinc     15847 Nov 24 11:54 start_atlas.sh
[2025-11-24 23:03:22] drwxrwx--x. 2 boinc boinc        68 Nov 24 11:54 shared
[2025-11-24 23:03:22] -rw-r--r--. 2 boinc boinc    590100 Nov 24 11:54 input.tar.gz
[2025-11-24 23:03:22] -rw-r--r--. 1 boinc boinc         0 Nov 24 11:54 boinc_lockfile
[2025-11-24 23:03:22] -rw-r--r--. 1 boinc boinc      2785 Nov 24 11:54 pandaJob.out
[2025-11-24 23:03:22] -rw-------. 1 boinc boinc    989786 Nov 24 11:55 agis_schedconf.cvmfs.json
[2025-11-24 23:03:22] drwx------. 5 boinc boinc      4096 Nov 24 11:55 pilot3
[2025-11-24 23:03:22] -rw-r--r--. 1 boinc boinc      9372 Nov 24 19:05 init_data.xml
[2025-11-24 23:03:22] -rw-r--r--. 1 boinc boinc       533 Nov 24 22:51 boinc_task_state.xml
[2025-11-24 23:03:22] -rw-------. 1 boinc boinc 920581234 Nov 24 23:01 HITS.47523449._006029.pool.root.1
[2025-11-24 23:03:22] -rw-------. 1 boinc boinc      1033 Nov 24 23:02 memory_monitor_summary.json
[2025-11-24 23:03:22] -rw-------. 1 boinc boinc   1516227 Nov 24 23:02 agis_ddmendpoints.agis.ALL.json
[2025-11-24 23:03:22] -rw-------. 1 boinc boinc   1687599 Nov 24 23:02 log.47523449._006029.job.log.tgz.1
[2025-11-24 23:03:22] -rw-------. 1 boinc boinc      8585 Nov 24 23:02 heartbeat.json
[2025-11-24 23:03:22] -rw-r--r--. 1 boinc boinc      8192 Nov 24 23:02 boinc_mmap_file
[2025-11-24 23:03:22] -rw-r--r--. 1 boinc boinc        29 Nov 24 23:02 wrapper_checkpoint.txt
[2025-11-24 23:03:22] -rw-------. 1 boinc boinc        95 Nov 24 23:03 pilot_heartbeat.json
[2025-11-24 23:03:22] -rw-------. 1 boinc boinc      4823 Nov 24 23:03 pilotlog.txt
[2025-11-24 23:03:22] -rw-------. 1 boinc boinc   5569597 Nov 24 23:03 log.47523449._006029.job.log.1
[2025-11-24 23:03:22] -rw-------. 1 boinc boinc       353 Nov 24 23:03 output.list
[2025-11-24 23:03:22] -rw-r--r--. 1 boinc boinc       620 Nov 24 23:03 runtime_log
[2025-11-24 23:03:22] -rw-------. 1 boinc boinc   7280640 Nov 24 23:03 result.tar.gz
[2025-11-24 23:03:22] -rw-r--r--. 1 boinc boinc      8776 Nov 24 23:03 runtime_log.err
[2025-11-24 23:03:22] -rw-------. 1 boinc boinc       652 Nov 24 23:03 KXTKDmOgKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm03HKDmwSVDPm.diag
[2025-11-24 23:03:22] -rw-r--r--. 1 boinc boinc     20777 Nov 24 23:03 stderr.txt
[2025-11-24 23:03:22] HITS file was successfully produced:
[2025-11-24 23:03:22] -rw-------. 1 boinc boinc 920581234 Nov 24 23:01 shared/HITS.pool.root.1
[2025-11-24 23:03:22]  *** Contents of shared directory: ***
[2025-11-24 23:03:22] total 1309124
[2025-11-24 23:03:22] -rw-r--r--. 2 boinc boinc 412064519 Nov 24 11:54 ATLAS.root_0
[2025-11-24 23:03:22] -rw-r--r--. 2 boinc boinc     15847 Nov 24 11:54 start_atlas.sh
[2025-11-24 23:03:22] -rw-r--r--. 2 boinc boinc    590100 Nov 24 11:54 input.tar.gz
[2025-11-24 23:03:22] -rw-------. 1 boinc boinc 920581234 Nov 24 23:01 HITS.pool.root.1
[2025-11-24 23:03:22] -rw-------. 1 boinc boinc   7280640 Nov 24 23:03 result.tar.gz
23:03:23 (1360134): run_atlas exited; CPU time 225000.181482
23:03:23 (1360134): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN