Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:56:55 (5995): wrapper (7.7.26015): starting
04:56:55 (5995): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 04:56:55] Arguments: --nthreads 8
[2025-11-26 04:56:55] Threads: 8
[2025-11-26 04:56:55] Checking for CVMFS
[2025-11-26 04:56:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 04:56:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 04:56:56] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 04:56:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 04:56:57] 2.11.2.0 22848 284823 142668 153307 0 85 24722614 25165824 1706 130560 10 145350536 99.887 77374836 2907 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-26 04:56:57] CVMFS is ok
[2025-11-26 04:56:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 04:56:57] Checking for apptainer binary...
[2025-11-26 04:56:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 04:56:57] Running /usr/bin/apptainer --version
[2025-11-26 04:56:57] apptainer version 1.3.2-1.el7
[2025-11-26 04:56:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 04:57:04] cg-vwn482.simple-grid.lan
[2025-11-26 04:57:04] apptainer works
[2025-11-26 04:57:04] Set ATHENA_PROC_NUMBER=8
[2025-11-26 04:57:04] Set ATHENA_CORE_NUMBER=8
[2025-11-26 04:57:05] Starting ATLAS job with PandaID=6895326376
[2025-11-26 04:57:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 02:59:26]  *** The last 200 lines of the pilot log: ***
[2025-11-27 02:59:26] 2025-11-27 01:58:17,246 | INFO     | time since job start (79039s) is within the limit (172800.0s)
[2025-11-27 02:59:26] 2025-11-27 01:58:18,846 | INFO     | monitor loop #5354: job 0:6895326376 is in state 'finished'
[2025-11-27 02:59:26] 2025-11-27 01:58:18,846 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:59:26] 2025-11-27 01:58:19,260 | INFO     | time since job start (79041s) is within the limit (172800.0s)
[2025-11-27 02:59:26] 2025-11-27 01:58:21,270 | INFO     | time since job start (79043s) is within the limit (172800.0s)
[2025-11-27 02:59:26] 2025-11-27 01:58:21,351 | INFO     | monitor loop #5355: job 0:6895326376 is in state 'finished'
[2025-11-27 02:59:26] 2025-11-27 01:58:21,351 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:59:26] 2025-11-27 01:58:22,382 | INFO     | PID=9793 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-27 02:59:26] 2025-11-27 01:58:22,382 | INFO     | .. there are 9 such processes running
[2025-11-27 02:59:26] 2025-11-27 01:58:23,385 | INFO     | time since job start (79045s) is within the limit (172800.0s)
[2025-11-27 02:59:26] 2025-11-27 01:58:23,858 | INFO     | monitor loop #5356: job 0:6895326376 is in state 'finished'
[2025-11-27 02:59:26] 2025-11-27 01:58:23,858 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:59:26] 2025-11-27 01:58:25,393 | INFO     | time since job start (79047s) is within the limit (172800.0s)
[2025-11-27 02:59:26] 2025-11-27 01:58:26,079 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 02:59:26] 2025-11-27 01:58:26,080 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2025-11-27 02:59:26] 2025-11-27 01:58:26,081 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6895326376/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 02:59:26] 2025-11-27 01:58:26,082 | INFO     | extracted standard info from prmon json
[2025-11-27 02:59:26] 2025-11-27 01:58:26,082 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 02:59:26] 2025-11-27 01:58:26,082 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 02:59:26] 2025-11-27 01:58:26,105 | INFO     | fitting pss+swap vs Time
[2025-11-27 02:59:26] 2025-11-27 01:58:26,107 | INFO     | sum of square deviations: 659477817863.061
[2025-11-27 02:59:26] 2025-11-27 01:58:26,148 | INFO     | sum of deviations: 3156860179086.4746
[2025-11-27 02:59:26] 2025-11-27 01:58:26,148 | INFO     | mean x: 1764169360.5707622
[2025-11-27 02:59:26] 2025-11-27 01:58:26,149 | INFO     | mean y: 2847654.7200622084
[2025-11-27 02:59:26] 2025-11-27 01:58:26,149 | INFO     | intersect: -8442070207.106681
[2025-11-27 02:59:26] 2025-11-27 01:58:26,150 | INFO     | chi2: 20.25080300326535
[2025-11-27 02:59:26] 2025-11-27 01:58:26,152 | INFO     | sum of square deviations: 651815889524.8064
[2025-11-27 02:59:26] 2025-11-27 01:58:26,192 | INFO     | sum of deviations: 3600466795996.6313
[2025-11-27 02:59:26] 2025-11-27 01:58:26,192 | INFO     | mean x: 1764169208.0749414
[2025-11-27 02:59:26] 2025-11-27 01:58:26,192 | INFO     | mean y: 2856483.795472287
[2025-11-27 02:59:26] 2025-11-27 01:58:26,192 | INFO     | intersect: -9741969867.130365
[2025-11-27 02:59:26] 2025-11-27 01:58:26,194 | INFO     | chi2: 16.856091473938637
[2025-11-27 02:59:26] 2025-11-27 01:58:26,194 | INFO     | current chi2=16.856091473938637 (change=16.763342810550927 %)
[2025-11-27 02:59:26] 2025-11-27 01:58:26,194 | INFO     | right removable region: 1280
[2025-11-27 02:59:26] 2025-11-27 01:58:26,196 | INFO     | sum of square deviations: 651815049554.8049
[2025-11-27 02:59:26] 2025-11-27 01:58:26,236 | INFO     | sum of deviations: 2613890775953.409
[2025-11-27 02:59:26] 2025-11-27 01:58:26,236 | INFO     | mean x: 1764169513.0749414
[2025-11-27 02:59:26] 2025-11-27 01:58:26,236 | INFO     | mean y: 2858460.193598751
[2025-11-27 02:59:26] 2025-11-27 01:58:26,237 | INFO     | intersect: -7071765577.091815
[2025-11-27 02:59:26] 2025-11-27 01:58:26,238 | INFO     | chi2: 15.447676988428945
[2025-11-27 02:59:26] 2025-11-27 01:58:26,238 | INFO     | current chi2=15.447676988428945 (change=23.71820028105514 %)
[2025-11-27 02:59:26] 2025-11-27 01:58:26,238 | INFO     | left removable region: 10
[2025-11-27 02:59:26] 2025-11-27 01:58:26,240 | INFO     | sum of square deviations: 635167370236.4845
[2025-11-27 02:59:26] 2025-11-27 01:58:26,279 | INFO     | sum of deviations: 2678746478228.2744
[2025-11-27 02:59:26] 2025-11-27 01:58:26,280 | INFO     | mean x: 1764169482.5842519
[2025-11-27 02:59:26] 2025-11-27 01:58:26,280 | INFO     | mean y: 2878752.9039370078
[2025-11-27 02:59:26] 2025-11-27 01:58:26,280 | INFO     | intersect: -7437306322.58392
[2025-11-27 02:59:26] 2025-11-27 01:58:26,281 | INFO     | chi2: 7.756326825337593
[2025-11-27 02:59:26] 2025-11-27 01:58:26,282 | INFO     | current memory leak: 4.22 B/s (using 1270 data points, chi2=7.76)
[2025-11-27 02:59:26] 2025-11-27 01:58:26,283 | INFO     | could have reported an average CPU frequency of 2249 MHz (44 samples)
[2025-11-27 02:59:26] 2025-11-27 01:58:26,283 | INFO     | ..............................
[2025-11-27 02:59:26] 2025-11-27 01:58:26,283 | INFO     | . Timing measurements:
[2025-11-27 02:59:26] 2025-11-27 01:58:26,283 | INFO     | . get job = 0 s
[2025-11-27 02:59:26] 2025-11-27 01:58:26,283 | INFO     | . initial setup = 12 s
[2025-11-27 02:59:26] 2025-11-27 01:58:26,283 | INFO     | . payload setup = 148 s
[2025-11-27 02:59:26] 2025-11-27 01:58:26,283 | INFO     | . stage-in = 0 s
[2025-11-27 02:59:26] 2025-11-27 01:58:26,283 | INFO     | . payload execution = 78593 s
[2025-11-27 02:59:26] 2025-11-27 01:58:26,283 | INFO     | . stage-out = 4 s
[2025-11-27 02:59:26] 2025-11-27 01:58:26,283 | INFO     | . log creation = 1 s
[2025-11-27 02:59:26] 2025-11-27 01:58:26,283 | INFO     | ..............................
[2025-11-27 02:59:26] 2025-11-27 01:58:26,378 | INFO     | 
[2025-11-27 02:59:26] 2025-11-27 01:58:26,378 | INFO     | job summary report
[2025-11-27 02:59:26] 2025-11-27 01:58:26,378 | INFO     | --------------------------------------------------
[2025-11-27 02:59:26] 2025-11-27 01:58:26,379 | INFO     | PanDA job id: 6895326376
[2025-11-27 02:59:26] 2025-11-27 01:58:26,379 | INFO     | task id: 47556137
[2025-11-27 02:59:26] 2025-11-27 01:58:26,379 | INFO     | errors: (none)
[2025-11-27 02:59:26] 2025-11-27 01:58:26,379 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 02:59:26] 2025-11-27 01:58:26,379 | INFO     | pilot state: finished 
[2025-11-27 02:59:26] 2025-11-27 01:58:26,379 | INFO     | transexitcode: 0
[2025-11-27 02:59:26] 2025-11-27 01:58:26,379 | INFO     | exeerrorcode: 0
[2025-11-27 02:59:26] 2025-11-27 01:58:26,379 | INFO     | exeerrordiag: 
[2025-11-27 02:59:26] 2025-11-27 01:58:26,379 | INFO     | exitcode: 0
[2025-11-27 02:59:26] 2025-11-27 01:58:26,379 | INFO     | exitmsg: OK
[2025-11-27 02:59:26] 2025-11-27 01:58:26,379 | INFO     | cpuconsumptiontime: 294726 s
[2025-11-27 02:59:26] 2025-11-27 01:58:26,379 | INFO     | nevents: 1000
[2025-11-27 02:59:26] 2025-11-27 01:58:26,379 | INFO     | neventsw: 0
[2025-11-27 02:59:26] 2025-11-27 01:58:26,380 | INFO     | pid: 16377
[2025-11-27 02:59:26] 2025-11-27 01:58:26,380 | INFO     | pgrp: 16377
[2025-11-27 02:59:26] 2025-11-27 01:58:26,380 | INFO     | corecount: 8
[2025-11-27 02:59:26] 2025-11-27 01:58:26,380 | INFO     | event service: False
[2025-11-27 02:59:26] 2025-11-27 01:58:26,380 | INFO     | sizes: {0: 2284033, 1: 2284288, 2: 2284288, 12: 2284316, 23: 2284344, 34: 2284372, 45: 2284528, 55: 2284556, 66: 2284584, 77: 2284612, 87: 2284668, 98: 2284976, 10
[2025-11-27 02:59:26] 2025-11-27 01:58:26,380 | INFO     | --------------------------------------------------
[2025-11-27 02:59:26] 2025-11-27 01:58:26,380 | INFO     | 
[2025-11-27 02:59:26] 2025-11-27 01:58:26,380 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-11-27 02:59:26] 2025-11-27 01:58:26,401 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 02:59:26] 2025-11-27 01:58:26,401 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 02:59:26] 2025-11-27 01:58:26,401 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 02:59:26] 2025-11-27 01:58:26,401 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 02:59:26] 2025-11-27 01:58:26,401 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 02:59:26] 2025-11-27 01:58:26,401 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 02:59:26] 2025-11-27 01:58:26,401 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 02:59:26] 2025-11-27 01:58:26,401 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 02:59:26] 2025-11-27 01:58:26,401 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 02:59:26] 2025-11-27 01:58:26,402 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 02:59:26] 2025-11-27 01:58:26,402 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 02:59:26] 2025-11-27 01:58:26,402 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 02:59:26] 2025-11-27 01:58:26,402 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 02:59:26] 2025-11-27 01:58:26,402 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 02:59:26] 2025-11-27 01:58:26,402 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 02:59:26] 2025-11-27 01:58:26,402 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 02:59:26] 2025-11-27 01:58:26,402 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 02:59:26] 2025-11-27 01:58:26,402 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 02:59:26] 2025-11-27 01:58:26,402 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 02:59:26] 2025-11-27 01:58:26,402 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 02:59:26] 2025-11-27 01:58:26,402 | INFO     | job 6895326376 has completed (purged errors)
[2025-11-27 02:59:26] 2025-11-27 01:58:26,403 | INFO     | overall cleanup function is called
[2025-11-27 02:59:26] 2025-11-27 01:58:27,418 | INFO     | --- collectZombieJob: --- 10, [16377]
[2025-11-27 02:59:26] 2025-11-27 01:58:27,418 | INFO     | zombie collector waiting for pid 16377
[2025-11-27 02:59:26] 2025-11-27 01:58:27,418 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 02:59:26] 2025-11-27 01:58:27,418 | INFO     | collected zombie processes
[2025-11-27 02:59:26] 2025-11-27 01:58:27,418 | INFO     | will attempt to kill all subprocesses of pid=16377
[2025-11-27 02:59:26] 2025-11-27 01:58:27,505 | INFO     | process IDs to be killed: [16377] (in reverse order)
[2025-11-27 02:59:26] 2025-11-27 01:58:27,631 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 02:59:26] 2025-11-27 01:58:27,631 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 02:59:26] 2025-11-27 01:58:27,634 | INFO     | did not find any defunct processes belonging to 16377
[2025-11-27 02:59:26] 2025-11-27 01:58:27,636 | INFO     | did not find any defunct processes belonging to 16377
[2025-11-27 02:59:26] 2025-11-27 01:58:27,638 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 02:59:26] 2025-11-27 01:58:27,638 | INFO     | ready for new job
[2025-11-27 02:59:26] 2025-11-27 01:58:27,638 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 02:59:26] 2025-11-27 01:58:27,643 | INFO     | ***************************************
[2025-11-27 02:59:26] 2025-11-27 01:58:27,643 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 02:59:26] 2025-11-27 01:58:27,643 | INFO     | ***************************************
[2025-11-27 02:59:26] 2025-11-27 01:58:27,643 | INFO     | 
[2025-11-27 02:59:26] 2025-11-27 01:58:27,643 | INFO     | pilot is running in a VM
[2025-11-27 02:59:26] 2025-11-27 01:58:27,644 | INFO     | architecture information:
[2025-11-27 02:59:26] 2025-11-27 01:58:27,644 | INFO     | executing command: cat /etc/os-release
[2025-11-27 02:59:26] 2025-11-27 01:58:27,717 | INFO     | cat /etc/os-release:
[2025-11-27 02:59:26] NAME="CentOS Linux"
[2025-11-27 02:59:26] VERSION="7 (Core)"
[2025-11-27 02:59:26] ID="centos"
[2025-11-27 02:59:26] ID_LIKE="rhel fedora"
[2025-11-27 02:59:26] VERSION_ID="7"
[2025-11-27 02:59:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 02:59:26] ANSI_COLOR="0;31"
[2025-11-27 02:59:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 02:59:26] HOME_URL="https://www.centos.org/"
[2025-11-27 02:59:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 02:59:26] 
[2025-11-27 02:59:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 02:59:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 02:59:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 02:59:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 02:59:26] 
[2025-11-27 02:59:26] 2025-11-27 01:58:27,718 | INFO     | ***************************************
[2025-11-27 02:59:26] 2025-11-27 01:58:28,221 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-11-27 02:59:26] 2025-11-27 01:58:28,382 | INFO     | sufficient remaining disk space (495341010944 B)
[2025-11-27 02:59:26] 2025-11-27 01:58:28,383 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 02:59:26] 2025-11-27 01:58:28,383 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 02:59:26] 2025-11-27 01:58:28,383 | INFO     | update_server=False
[2025-11-27 02:59:26] 2025-11-27 01:58:28,383 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 02:59:26] 2025-11-27 01:58:28,383 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 02:59:26] 2025-11-27 01:58:28,637 | INFO     | all data control threads have been joined
[2025-11-27 02:59:26] 2025-11-27 01:58:28,873 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 02:59:26] 2025-11-27 01:58:28,873 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 02:59:26] 2025-11-27 01:58:28,873 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 02:59:26] 2025-11-27 01:58:28,873 | INFO     | will abort loop
[2025-11-27 02:59:26] 2025-11-27 01:58:29,017 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 02:59:26] 2025-11-27 01:58:29,389 | INFO     | [job] retrieve thread has finished
[2025-11-27 02:59:26] 2025-11-27 01:58:29,389 | INFO     | [job] queue monitor thread has finished
[2025-11-27 02:59:26] 2025-11-27 01:58:29,404 | INFO     | all payload control threads have been joined
[2025-11-27 02:59:26] 2025-11-27 01:58:29,408 | INFO     | [job] validate thread has finished
[2025-11-27 02:59:26] 2025-11-27 01:58:29,496 | INFO     | all job control threads have been joined
[2025-11-27 02:59:26] 2025-11-27 01:58:29,643 | INFO     | [data] control thread has finished
[2025-11-27 02:59:26] 2025-11-27 01:58:29,767 | INFO     | [payload] validate_post thread has finished
[2025-11-27 02:59:26] 2025-11-27 01:58:29,879 | INFO     | [job] job monitor thread has finished
[2025-11-27 02:59:26] 2025-11-27 01:58:30,025 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 02:59:26] 2025-11-27 01:58:30,248 | INFO     | [payload] failed_post thread has finished
[2025-11-27 02:59:26] 2025-11-27 01:58:30,410 | INFO     | [payload] control thread has finished
[2025-11-27 02:59:26] 2025-11-27 01:58:30,421 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 02:59:26] 2025-11-27 01:58:30,483 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 02:59:26] 2025-11-27 01:58:30,502 | INFO     | [job] control thread has finished
[2025-11-27 02:59:26] 2025-11-27 01:58:30,510 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 02:59:26] 2025-11-27 01:58:30,536 | INFO     | [data] copytool_in thread has finished
[2025-11-27 02:59:26] 2025-11-27 01:58:31,024 | INFO     | [data] copytool_out thread has finished
[2025-11-27 02:59:26] 2025-11-27 01:58:34,492 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 02:59:26] 2025-11-27 01:58:39,216 | INFO     | job.realtimelogging is not enabled
[2025-11-27 02:59:26] 2025-11-27 01:58:40,221 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 02:59:26] 2025-11-27 01:58:58,596 | INFO     | PID=9793 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-27 02:59:26] 2025-11-27 01:58:58,596 | INFO     | .. there are 9 such processes running
[2025-11-27 02:59:26] 2025-11-27 01:58:58,598 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 02:59:26] 2025-11-27 01:58:58,598 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 02:59:26] 2025-11-27 01:58:58,598 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 02:59:26] 2025-11-27 01:59:15,961 | INFO     | [monitor] cgroup control has ended
[2025-11-27 02:59:26] 2025-11-27 01:59:16,009 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140657951250240)>', '<ExcThread(monitor, started 140657645557504)>']
[2025-11-27 02:59:26] 2025-11-27 01:59:16,706 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 02:59:26] 2025-11-27 01:59:16,706 | INFO     | [monitor] control thread has ended
[2025-11-27 02:59:26] 2025-11-27 01:59:21,035 | INFO     | all workflow threads have been joined
[2025-11-27 02:59:26] 2025-11-27 01:59:21,035 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 02:59:26] 2025-11-27 01:59:21,035 | INFO     | traces error code: 0
[2025-11-27 02:59:26] 2025-11-27 01:59:21,035 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 02:59:26] 2025-11-27 01:59:21,371 [wrapper] ==== pilot stdout END ====
[2025-11-27 02:59:26] 2025-11-27 01:59:21,455 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 02:59:26] 2025-11-27 01:59:21,560 [wrapper] pilotpid: 9793
[2025-11-27 02:59:26] 2025-11-27 01:59:21,681 [wrapper] Pilot exit status: 0
[2025-11-27 02:59:26] 2025-11-27 01:59:22,081 [wrapper] pandaids: 6895326376
[2025-11-27 02:59:26] 2025-11-27 01:59:22,864 [wrapper] cleanup supervisor_pilot  4471 9794
[2025-11-27 02:59:26] 2025-11-27 01:59:22,924 [wrapper] Test setup, not cleaning
[2025-11-27 02:59:26] 2025-11-27 01:59:23,034 [wrapper] apfmon messages muted
[2025-11-27 02:59:26] 2025-11-27 01:59:23,180 [wrapper] ==== wrapper stdout END ====
[2025-11-27 02:59:26] 2025-11-27 01:59:23,316 [wrapper] ==== wrapper stderr END ====
[2025-11-27 02:59:26]  *** Error codes and diagnostics ***
[2025-11-27 02:59:26]     "exeErrorCode": 0,
[2025-11-27 02:59:26]     "exeErrorDiag": "",
[2025-11-27 02:59:26]     "pilotErrorCode": 0,
[2025-11-27 02:59:26]     "pilotErrorDiag": "",
[2025-11-27 02:59:26]  *** Listing of results directory ***
[2025-11-27 02:59:26] total 1335916
[2025-11-27 02:59:26] -rw-r--r--. 1 boinc boinc    576529 Nov 21 16:23 pilot3.tar.gz
[2025-11-27 02:59:26] -rw-r--r--. 1 boinc boinc      5112 Nov 21 16:34 queuedata.json
[2025-11-27 02:59:26] -rwx------. 1 boinc boinc     36292 Nov 21 16:35 runpilot2-wrapper.sh
[2025-11-27 02:59:26] -rw-r--r--. 1 boinc boinc       100 Nov 26 04:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 02:59:26] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 04:56 run_atlas
[2025-11-27 02:59:26] -rw-r--r--. 1 boinc boinc       105 Nov 26 04:56 job.xml
[2025-11-27 02:59:26] -rw-r--r--. 1 boinc boinc      6392 Nov 26 04:56 init_data.xml
[2025-11-27 02:59:26] -rw-r--r--. 2 boinc boinc 410531495 Nov 26 04:56 EVNT.47483658._000041.pool.root.1
[2025-11-27 02:59:26] -rw-r--r--. 2 boinc boinc     15847 Nov 26 04:56 start_atlas.sh
[2025-11-27 02:59:26] drwxrwx--x. 2 boinc boinc        68 Nov 26 04:56 shared
[2025-11-27 02:59:26] -rw-r--r--. 2 boinc boinc    590100 Nov 26 04:56 input.tar.gz
[2025-11-27 02:59:26] -rw-r--r--. 1 boinc boinc         0 Nov 26 04:56 boinc_lockfile
[2025-11-27 02:59:26] -rw-r--r--. 1 boinc boinc      2783 Nov 26 04:57 pandaJob.out
[2025-11-27 02:59:26] -rw-------. 1 boinc boinc    991877 Nov 26 05:00 agis_schedconf.cvmfs.json
[2025-11-27 02:59:26] drwx------. 5 boinc boinc      4096 Nov 26 05:00 pilot3
[2025-11-27 02:59:26] -rw-r--r--. 1 boinc boinc       533 Nov 27 02:38 boinc_task_state.xml
[2025-11-27 02:59:26] -rw-------. 1 boinc boinc 927615452 Nov 27 02:55 HITS.47556137._000404.pool.root.1
[2025-11-27 02:59:26] -rw-------. 1 boinc boinc      1030 Nov 27 02:56 memory_monitor_summary.json
[2025-11-27 02:59:26] -rw-------. 1 boinc boinc   1516240 Nov 27 02:56 agis_ddmendpoints.agis.ALL.json
[2025-11-27 02:59:26] -rw-------. 1 boinc boinc   2398718 Nov 27 02:56 log.47556137._000404.job.log.tgz.1
[2025-11-27 02:59:26] -rw-------. 1 boinc boinc      8636 Nov 27 02:58 heartbeat.json
[2025-11-27 02:59:26] -rw-------. 1 boinc boinc        95 Nov 27 02:58 pilot_heartbeat.json
[2025-11-27 02:59:26] -rw-------. 1 boinc boinc      5141 Nov 27 02:59 pilotlog.txt
[2025-11-27 02:59:26] -rw-------. 1 boinc boinc  10562012 Nov 27 02:59 log.47556137._000404.job.log.1
[2025-11-27 02:59:26] -rw-r--r--. 1 boinc boinc        29 Nov 27 02:59 wrapper_checkpoint.txt
[2025-11-27 02:59:26] -rw-r--r--. 1 boinc boinc      8192 Nov 27 02:59 boinc_mmap_file
[2025-11-27 02:59:26] -rw-------. 1 boinc boinc       353 Nov 27 02:59 output.list
[2025-11-27 02:59:26] -rw-r--r--. 1 boinc boinc       620 Nov 27 02:59 runtime_log
[2025-11-27 02:59:26] -rw-------. 1 boinc boinc  12984320 Nov 27 02:59 result.tar.gz
[2025-11-27 02:59:26] -rw-r--r--. 1 boinc boinc      8817 Nov 27 02:59 runtime_log.err
[2025-11-27 02:59:26] -rw-------. 1 boinc boinc       662 Nov 27 02:59 e2QODmyLig8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmEWJKDm08wkHn.diag
[2025-11-27 02:59:26] -rw-r--r--. 1 boinc boinc     21445 Nov 27 02:59 stderr.txt
[2025-11-27 02:59:26] HITS file was successfully produced:
[2025-11-27 02:59:26] -rw-------. 1 boinc boinc 927615452 Nov 27 02:55 shared/HITS.pool.root.1
[2025-11-27 02:59:26]  *** Contents of shared directory: ***
[2025-11-27 02:59:26] total 1320064
[2025-11-27 02:59:26] -rw-r--r--. 2 boinc boinc 410531495 Nov 26 04:56 ATLAS.root_0
[2025-11-27 02:59:26] -rw-r--r--. 2 boinc boinc     15847 Nov 26 04:56 start_atlas.sh
[2025-11-27 02:59:26] -rw-r--r--. 2 boinc boinc    590100 Nov 26 04:56 input.tar.gz
[2025-11-27 02:59:26] -rw-------. 1 boinc boinc 927615452 Nov 27 02:55 HITS.pool.root.1
[2025-11-27 02:59:26] -rw-------. 1 boinc boinc  12984320 Nov 27 02:59 result.tar.gz
02:59:28 (5995): run_atlas exited; CPU time 295176.203143
02:59:28 (5995): called boinc_finish(0)

</stderr_txt>
]]>

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