Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:40:41 (1967355): wrapper (7.7.26015): starting
14:40:41 (1967355): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 14:40:41] Arguments: --nthreads 8
[2025-11-23 14:40:41] Threads: 8
[2025-11-23 14:40:41] Checking for CVMFS
[2025-11-23 14:40:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 14:40:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 14:40:42] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 14:40:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 14:40:43] 2.13.3.0 11414 26116 212484 153219 1 409 22284988 25181184 26812 16776704 0 163370765 99.662 137967688 25603 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-23 14:40:43] CVMFS is ok
[2025-11-23 14:40:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 14:40:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 14:40:43] Further information can be found at the LHC@home message board.
[2025-11-23 14:40:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 14:40:43] Checking for apptainer binary...
[2025-11-23 14:40:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 14:40:43] Running /usr/bin/apptainer --version
[2025-11-23 14:40:44] apptainer version 1.4.4-1.el9
[2025-11-23 14:40:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 14:40:44] c-16-34.aglt2.org
[2025-11-23 14:40:44] apptainer works
[2025-11-23 14:40:44] Set ATHENA_PROC_NUMBER=8
[2025-11-23 14:40:44] Set ATHENA_CORE_NUMBER=8
[2025-11-23 14:40:44] Starting ATLAS job with PandaID=6895331993
[2025-11-23 14:40:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 23:12:07]  *** The last 200 lines of the pilot log: ***
[2025-11-24 23:12:07] 2025-11-25 04:11:24,740 | INFO     | job 6895331993 has finished - writing final server update
[2025-11-24 23:12:07] 2025-11-25 04:11:24,740 | INFO     | total number of processed events: 1000 (read)
[2025-11-24 23:12:07] 2025-11-25 04:11:24,741 | INFO     | executing command: lscpu
[2025-11-24 23:12:07] 2025-11-25 04:11:24,799 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-24 23:12:07] 2025-11-25 04:11:26,069 | INFO     | monitor loop #7101: job 0:6895331993 is in state 'finished'
[2025-11-24 23:12:07] 2025-11-25 04:11:26,069 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 23:12:07] 2025-11-25 04:11:26,722 | INFO     | time since job start (117004s) is within the limit (172800.0s)
[2025-11-24 23:12:07] 2025-11-25 04:11:28,581 | INFO     | monitor loop #7102: job 0:6895331993 is in state 'finished'
[2025-11-24 23:12:07] 2025-11-25 04:11:28,581 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 23:12:07] 2025-11-25 04:11:28,728 | INFO     | time since job start (117006s) is within the limit (172800.0s)
[2025-11-24 23:12:07] 2025-11-25 04:11:30,734 | INFO     | time since job start (117008s) is within the limit (172800.0s)
[2025-11-24 23:12:07] 2025-11-25 04:11:31,087 | INFO     | monitor loop #7103: job 0:6895331993 is in state 'finished'
[2025-11-24 23:12:07] 2025-11-25 04:11:31,087 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 23:12:07] 2025-11-25 04:11:32,591 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 23:12:07] 2025-11-25 04:11:32,600 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 2799.9914583333334
[2025-11-24 23:12:07] 2025-11-25 04:11:32,610 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895331993/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 23:12:07] 2025-11-25 04:11:32,611 | INFO     | extracted standard info from prmon json
[2025-11-24 23:12:07] 2025-11-25 04:11:32,611 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 23:12:07] 2025-11-25 04:11:32,611 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 23:12:07] 2025-11-25 04:11:32,648 | INFO     | fitting pss+swap vs Time
[2025-11-24 23:12:07] 2025-11-25 04:11:32,651 | INFO     | sum of square deviations: 2184472147976.3955
[2025-11-24 23:12:07] 2025-11-25 04:11:32,748 | INFO     | time since job start (117010s) is within the limit (172800.0s)
[2025-11-24 23:12:07] 2025-11-25 04:11:32,774 | INFO     | sum of deviations: 9575523698761.25
[2025-11-24 23:12:07] 2025-11-25 04:11:32,774 | INFO     | mean x: 1763985389.1877935
[2025-11-24 23:12:07] 2025-11-25 04:11:32,774 | INFO     | mean y: 2946458.429838289
[2025-11-24 23:12:07] 2025-11-25 04:11:32,775 | INFO     | intersect: -7729394699.631392
[2025-11-24 23:12:07] 2025-11-25 04:11:32,777 | INFO     | chi2: 13.893884950218357
[2025-11-24 23:12:07] 2025-11-25 04:11:32,780 | INFO     | sum of square deviations: 2167424560014.3237
[2025-11-24 23:12:07] 2025-11-25 04:11:32,893 | INFO     | sum of deviations: 10208850858118.871
[2025-11-24 23:12:07] 2025-11-25 04:11:32,894 | INFO     | mean x: 1763985236.6908996
[2025-11-24 23:12:07] 2025-11-25 04:11:32,894 | INFO     | mean y: 2952123.8085774058
[2025-11-24 23:12:07] 2025-11-25 04:11:32,894 | INFO     | intersect: -8305647183.1873255
[2025-11-24 23:12:07] 2025-11-25 04:11:32,896 | INFO     | chi2: 10.91901387753459
[2025-11-24 23:12:07] 2025-11-25 04:11:32,896 | INFO     | current chi2=10.91901387753459 (change=21.41136970215817 %)
[2025-11-24 23:12:07] 2025-11-25 04:11:32,897 | INFO     | right removable region: 1911
[2025-11-24 23:12:07] 2025-11-25 04:11:32,899 | INFO     | sum of square deviations: 2167423171044.323
[2025-11-24 23:12:07] 2025-11-25 04:11:32,991 | INFO     | sum of deviations: 8862568712539.736
[2025-11-24 23:12:07] 2025-11-25 04:11:32,991 | INFO     | mean x: 1763985541.6908996
[2025-11-24 23:12:07] 2025-11-25 04:11:32,992 | INFO     | mean y: 2952834.9623430963
[2025-11-24 23:12:07] 2025-11-25 04:11:32,992 | INFO     | intersect: -7209963996.423939
[2025-11-24 23:12:07] 2025-11-25 04:11:32,994 | INFO     | chi2: 10.576388681321763
[2025-11-24 23:12:07] 2025-11-25 04:11:32,994 | INFO     | current chi2=10.576388681321763 (change=23.87738404904854 %)
[2025-11-24 23:12:07] 2025-11-25 04:11:32,994 | INFO     | left removable region: 10
[2025-11-24 23:12:07] 2025-11-25 04:11:32,997 | INFO     | sum of square deviations: 2130229801397.6296
[2025-11-24 23:12:07] 2025-11-25 04:11:33,113 | INFO     | sum of deviations: 9173369216941.09
[2025-11-24 23:12:07] 2025-11-25 04:11:33,114 | INFO     | mean x: 1763985511.1977906
[2025-11-24 23:12:07] 2025-11-25 04:11:33,114 | INFO     | mean y: 2964239.7364544976
[2025-11-24 23:12:07] 2025-11-25 04:11:33,114 | INFO     | intersect: -7593253960.260187
[2025-11-24 23:12:07] 2025-11-25 04:11:33,116 | INFO     | chi2: 5.443542809118359
[2025-11-24 23:12:07] 2025-11-25 04:11:33,116 | INFO     | current memory leak: 4.31 B/s (using 1901 data points, chi2=5.44)
[2025-11-24 23:12:07] 2025-11-25 04:11:33,118 | INFO     | could have reported an average CPU frequency of 2786 MHz (67 samples)
[2025-11-24 23:12:07] 2025-11-25 04:11:33,118 | INFO     | ..............................
[2025-11-24 23:12:07] 2025-11-25 04:11:33,118 | INFO     | . Timing measurements:
[2025-11-24 23:12:07] 2025-11-25 04:11:33,118 | INFO     | . get job = 0 s
[2025-11-24 23:12:07] 2025-11-25 04:11:33,118 | INFO     | . initial setup = 3 s
[2025-11-24 23:12:07] 2025-11-25 04:11:33,119 | INFO     | . payload setup = 21 s
[2025-11-24 23:12:07] 2025-11-25 04:11:33,119 | INFO     | . stage-in = 0 s
[2025-11-24 23:12:07] 2025-11-25 04:11:33,119 | INFO     | . payload execution = 116933 s
[2025-11-24 23:12:07] 2025-11-25 04:11:33,119 | INFO     | . stage-out = 5 s
[2025-11-24 23:12:07] 2025-11-25 04:11:33,119 | INFO     | . log creation = 2 s
[2025-11-24 23:12:07] 2025-11-25 04:11:33,119 | INFO     | ..............................
[2025-11-24 23:12:07] 2025-11-25 04:11:33,292 | INFO     | 
[2025-11-24 23:12:07] 2025-11-25 04:11:33,292 | INFO     | job summary report
[2025-11-24 23:12:07] 2025-11-25 04:11:33,292 | INFO     | --------------------------------------------------
[2025-11-24 23:12:07] 2025-11-25 04:11:33,292 | INFO     | PanDA job id: 6895331993
[2025-11-24 23:12:07] 2025-11-25 04:11:33,292 | INFO     | task id: 47556137
[2025-11-24 23:12:07] 2025-11-25 04:11:33,293 | INFO     | errors: (none)
[2025-11-24 23:12:07] 2025-11-25 04:11:33,293 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 23:12:07] 2025-11-25 04:11:33,293 | INFO     | pilot state: finished 
[2025-11-24 23:12:07] 2025-11-25 04:11:33,293 | INFO     | transexitcode: 0
[2025-11-24 23:12:07] 2025-11-25 04:11:33,293 | INFO     | exeerrorcode: 0
[2025-11-24 23:12:07] 2025-11-25 04:11:33,293 | INFO     | exeerrordiag: 
[2025-11-24 23:12:07] 2025-11-25 04:11:33,293 | INFO     | exitcode: 0
[2025-11-24 23:12:07] 2025-11-25 04:11:33,293 | INFO     | exitmsg: OK
[2025-11-24 23:12:07] 2025-11-25 04:11:33,293 | INFO     | cpuconsumptiontime: 328243 s
[2025-11-24 23:12:07] 2025-11-25 04:11:33,293 | INFO     | nevents: 1000
[2025-11-24 23:12:07] 2025-11-25 04:11:33,293 | INFO     | neventsw: 0
[2025-11-24 23:12:07] 2025-11-25 04:11:33,294 | INFO     | pid: 1978798
[2025-11-24 23:12:07] 2025-11-25 04:11:33,294 | INFO     | pgrp: 1978798
[2025-11-24 23:12:07] 2025-11-25 04:11:33,294 | INFO     | corecount: 8
[2025-11-24 23:12:07] 2025-11-25 04:11:33,294 | INFO     | event service: False
[2025-11-24 23:12:07] 2025-11-25 04:11:33,294 | INFO     | sizes: {0: 2298756, 1: 2298756, 12: 2298784, 13: 2299074, 23: 2299130, 116958: 2379192, 116959: 2379319, 116965: 2389244, 116975: 2389434}
[2025-11-24 23:12:07] 2025-11-25 04:11:33,294 | INFO     | --------------------------------------------------
[2025-11-24 23:12:07] 2025-11-25 04:11:33,294 | INFO     | 
[2025-11-24 23:12:07] 2025-11-25 04:11:33,294 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-24 23:12:07] 2025-11-25 04:11:33,313 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 23:12:07] 2025-11-25 04:11:33,314 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 23:12:07] 2025-11-25 04:11:33,314 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 23:12:07] 2025-11-25 04:11:33,314 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 23:12:07] 2025-11-25 04:11:33,314 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 23:12:07] 2025-11-25 04:11:33,314 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 23:12:07] 2025-11-25 04:11:33,315 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 23:12:07] 2025-11-25 04:11:33,315 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 23:12:07] 2025-11-25 04:11:33,315 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 23:12:07] 2025-11-25 04:11:33,315 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 23:12:07] 2025-11-25 04:11:33,315 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 23:12:07] 2025-11-25 04:11:33,315 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 23:12:07] 2025-11-25 04:11:33,315 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 23:12:07] 2025-11-25 04:11:33,315 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 23:12:07] 2025-11-25 04:11:33,316 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 23:12:07] 2025-11-25 04:11:33,316 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 23:12:07] 2025-11-25 04:11:33,316 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 23:12:07] 2025-11-25 04:11:33,316 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 23:12:07] 2025-11-25 04:11:33,316 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 23:12:07] 2025-11-25 04:11:33,316 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 23:12:07] 2025-11-25 04:11:33,316 | INFO     | job 6895331993 has completed (purged errors)
[2025-11-24 23:12:07] 2025-11-25 04:11:33,317 | INFO     | overall cleanup function is called
[2025-11-24 23:12:07] 2025-11-25 04:11:34,332 | INFO     | --- collectZombieJob: --- 10, [1978798]
[2025-11-24 23:12:07] 2025-11-25 04:11:34,333 | INFO     | zombie collector waiting for pid 1978798
[2025-11-24 23:12:07] 2025-11-25 04:11:34,367 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 23:12:07] 2025-11-25 04:11:34,367 | INFO     | collected zombie processes
[2025-11-24 23:12:07] 2025-11-25 04:11:34,367 | INFO     | will attempt to kill all subprocesses of pid=1978798
[2025-11-24 23:12:07] 2025-11-25 04:11:35,145 | INFO     | process IDs to be killed: [1978798] (in reverse order)
[2025-11-24 23:12:07] 2025-11-25 04:11:35,308 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 23:12:07] 2025-11-25 04:11:35,309 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 23:12:07] 2025-11-25 04:11:35,326 | INFO     | did not find any defunct processes belonging to 1978798
[2025-11-24 23:12:07] 2025-11-25 04:11:35,345 | INFO     | did not find any defunct processes belonging to 1978798
[2025-11-24 23:12:07] 2025-11-25 04:11:35,346 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 23:12:07] 2025-11-25 04:11:35,347 | INFO     | ready for new job
[2025-11-24 23:12:07] 2025-11-25 04:11:35,347 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 23:12:07] 2025-11-25 04:11:35,352 | INFO     | ***************************************
[2025-11-24 23:12:07] 2025-11-25 04:11:35,352 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 23:12:07] 2025-11-25 04:11:35,352 | INFO     | ***************************************
[2025-11-24 23:12:07] 2025-11-25 04:11:35,352 | INFO     | 
[2025-11-24 23:12:07] 2025-11-25 04:11:35,355 | INFO     | architecture information:
[2025-11-24 23:12:07] 2025-11-25 04:11:35,356 | INFO     | executing command: cat /etc/os-release
[2025-11-24 23:12:07] 2025-11-25 04:11:35,374 | INFO     | cat /etc/os-release:
[2025-11-24 23:12:07] NAME="CentOS Linux"
[2025-11-24 23:12:07] VERSION="7 (Core)"
[2025-11-24 23:12:07] ID="centos"
[2025-11-24 23:12:07] ID_LIKE="rhel fedora"
[2025-11-24 23:12:07] VERSION_ID="7"
[2025-11-24 23:12:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 23:12:07] ANSI_COLOR="0;31"
[2025-11-24 23:12:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 23:12:07] HOME_URL="https://www.centos.org/"
[2025-11-24 23:12:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 23:12:07] 
[2025-11-24 23:12:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 23:12:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 23:12:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 23:12:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 23:12:07] 
[2025-11-24 23:12:07] 2025-11-25 04:11:35,375 | INFO     | ***************************************
[2025-11-24 23:12:07] 2025-11-25 04:11:35,880 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-24 23:12:07] 2025-11-25 04:11:35,913 | INFO     | sufficient remaining disk space (61189652480 B)
[2025-11-24 23:12:07] 2025-11-25 04:11:35,914 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 23:12:07] 2025-11-25 04:11:35,914 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 23:12:07] 2025-11-25 04:11:35,914 | INFO     | update_server=False
[2025-11-24 23:12:07] 2025-11-25 04:11:35,914 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 23:12:07] 2025-11-25 04:11:35,914 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 23:12:07] 2025-11-25 04:11:36,128 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-24 23:12:07] 2025-11-25 04:11:36,128 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-24 23:12:07] 2025-11-25 04:11:36,128 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 23:12:07] 2025-11-25 04:11:36,129 | INFO     | will abort loop
[2025-11-24 23:12:07] 2025-11-25 04:11:36,162 | INFO     | all payload control threads have been joined
[2025-11-24 23:12:07] 2025-11-25 04:11:36,202 [wrapper] supervise_pilot (15 min periods counter: 131)
[2025-11-24 23:12:07] 2025-11-25 04:11:36,220 | INFO     | all data control threads have been joined
[2025-11-24 23:12:07] 2025-11-25 04:11:36,920 | INFO     | [job] retrieve thread has finished
[2025-11-24 23:12:07] 2025-11-25 04:11:36,929 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 23:12:07] 2025-11-25 04:11:36,931 | INFO     | [payload] failed_post thread has finished
[2025-11-24 23:12:07] 2025-11-25 04:11:36,991 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 23:12:07] 2025-11-25 04:11:37,082 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 23:12:07] 2025-11-25 04:11:37,134 | INFO     | [job] job monitor thread has finished
[2025-11-24 23:12:07] 2025-11-25 04:11:37,168 | INFO     | [payload] control thread has finished
[2025-11-24 23:12:07] 2025-11-25 04:11:37,199 | INFO     | [payload] validate_post thread has finished
[2025-11-24 23:12:07] 2025-11-25 04:11:37,225 | INFO     | [data] control thread has finished
[2025-11-24 23:12:07] 2025-11-25 04:11:37,304 | INFO     | [job] validate thread has finished
[2025-11-24 23:12:07] 2025-11-25 04:11:37,582 | INFO     | all job control threads have been joined
[2025-11-24 23:12:07] 2025-11-25 04:11:37,612 | INFO     | [data] copytool_in thread has finished
[2025-11-24 23:12:07] 2025-11-25 04:11:37,905 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 23:12:07] 2025-11-25 04:11:37,922 | INFO     | [data] copytool_out thread has finished
[2025-11-24 23:12:07] 2025-11-25 04:11:38,147 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 23:12:07] 2025-11-25 04:11:38,269 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 23:12:07] 2025-11-25 04:11:38,588 | INFO     | [job] control thread has finished
[2025-11-24 23:12:07] 2025-11-25 04:11:39,276 | INFO     | [job] queue monitor thread has finished
[2025-11-24 23:12:07] 2025-11-25 04:11:42,156 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 23:12:07] 2025-11-25 04:11:52,608 | INFO     | [monitor] cgroup control has ended
[2025-11-24 23:12:07] 2025-11-25 04:11:53,871 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140411031213888)>', '<ExcThread(monitor, started 140410374571776)>']
[2025-11-24 23:12:07] 2025-11-25 04:11:58,897 | INFO     | all workflow threads have been joined
[2025-11-24 23:12:07] 2025-11-25 04:11:58,897 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 23:12:07] 2025-11-25 04:11:58,898 | INFO     | traces error code: 0
[2025-11-24 23:12:07] 2025-11-25 04:11:58,898 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 23:12:07] 2025-11-25 04:12:06,822 | INFO     | PID=1971777 has CPU usage=5.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 23:12:07] 2025-11-25 04:12:06,823 | INFO     | .. there are 46 such processes running
[2025-11-24 23:12:07] 2025-11-25 04:12:06,823 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 23:12:07] 2025-11-25 04:12:06,823 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 23:12:07] 2025-11-25 04:12:06,823 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 23:12:07] 2025-11-25 04:12:06,823 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 23:12:07] 2025-11-25 04:12:06,823 | INFO     | [monitor] control thread has ended
[2025-11-24 23:12:07] 2025-11-25 04:12:06,998 [wrapper] ==== pilot stdout END ====
[2025-11-24 23:12:07] 2025-11-25 04:12:07,009 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 23:12:07] 2025-11-25 04:12:07,014 [wrapper] pilotpid: 1971777
[2025-11-24 23:12:07] 2025-11-25 04:12:07,041 [wrapper] Pilot exit status: 0
[2025-11-24 23:12:07] 2025-11-25 04:12:07,109 [wrapper] pandaids: 6895331993
[2025-11-24 23:12:07] 2025-11-25 04:12:07,239 [wrapper] cleanup supervisor_pilot  981584 1971778
[2025-11-24 23:12:07] 2025-11-25 04:12:07,243 [wrapper] Test setup, not cleaning
[2025-11-24 23:12:07] 2025-11-25 04:12:07,246 [wrapper] apfmon messages muted
[2025-11-24 23:12:07] 2025-11-25 04:12:07,249 [wrapper] ==== wrapper stdout END ====
[2025-11-24 23:12:07] 2025-11-25 04:12:07,251 [wrapper] ==== wrapper stderr END ====
[2025-11-24 23:12:07]  *** Error codes and diagnostics ***
[2025-11-24 23:12:07]     "exeErrorCode": 0,
[2025-11-24 23:12:07]     "exeErrorDiag": "",
[2025-11-24 23:12:07]     "pilotErrorCode": 0,
[2025-11-24 23:12:07]     "pilotErrorDiag": "",
[2025-11-24 23:12:07]  *** Listing of results directory ***
[2025-11-24 23:12:07] total 1335560
[2025-11-24 23:12:07] -rw-r--r--. 1 boincer umatlas    598293 Nov  6 03:41 pilot3.tar.gz
[2025-11-24 23:12:07] -rwx------. 1 boincer umatlas     36292 Nov 21 19:04 runpilot2-wrapper.sh
[2025-11-24 23:12:07] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 19:04 queuedata.json
[2025-11-24 23:12:07] -rw-r--r--. 1 boincer umatlas       100 Nov 23 14:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 23:12:07] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 23 14:40 run_atlas
[2025-11-24 23:12:07] -rw-r--r--. 1 boincer umatlas       105 Nov 23 14:40 job.xml
[2025-11-24 23:12:07] -rw-r--r--. 2 boincer umatlas 409783887 Nov 23 14:40 EVNT.47483658._000185.pool.root.1
[2025-11-24 23:12:07] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 14:40 start_atlas.sh
[2025-11-24 23:12:07] drwxrwx--x. 2 boincer umatlas      4096 Nov 23 14:40 shared
[2025-11-24 23:12:07] -rw-r--r--. 2 boincer umatlas    611279 Nov 23 14:40 input.tar.gz
[2025-11-24 23:12:07] -rw-r--r--. 1 boincer umatlas         0 Nov 23 14:40 boinc_lockfile
[2025-11-24 23:12:07] -rw-r--r--. 1 boincer umatlas      2785 Nov 23 14:40 pandaJob.out
[2025-11-24 23:12:07] -rw-------. 1 boincer umatlas        57 Nov 23 14:40 setup.sh.local
[2025-11-24 23:12:07] -rw-------. 1 boincer umatlas    989786 Nov 23 14:41 agis_schedconf.cvmfs.json
[2025-11-24 23:12:07] drwx------. 7 boincer umatlas      4096 Nov 23 14:41 pilot3
[2025-11-24 23:12:07] -rw-r--r--. 1 boincer umatlas       533 Nov 24 22:50 boinc_task_state.xml
[2025-11-24 23:12:07] -rw-------. 1 boincer umatlas 918461936 Nov 24 23:10 HITS.47556137._001847.pool.root.1
[2025-11-24 23:12:07] -rw-------. 1 boincer umatlas      1081 Nov 24 23:11 memory_monitor_summary.json
[2025-11-24 23:12:07] -rw-------. 1 boincer umatlas   1516227 Nov 24 23:11 agis_ddmendpoints.agis.ALL.json
[2025-11-24 23:12:07] -rw-------. 1 boincer umatlas   2825951 Nov 24 23:11 log.47556137._001847.job.log.tgz.1
[2025-11-24 23:12:07] -rw-------. 1 boincer umatlas        95 Nov 24 23:11 pilot_heartbeat.json
[2025-11-24 23:12:07] -rw-------. 1 boincer umatlas      8662 Nov 24 23:11 heartbeat.json
[2025-11-24 23:12:07] -rw-r--r--. 1 boincer umatlas      6611 Nov 24 23:11 init_data.xml
[2025-11-24 23:12:07] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 23:12 boinc_mmap_file
[2025-11-24 23:12:07] -rw-r--r--. 1 boincer umatlas        29 Nov 24 23:12 wrapper_checkpoint.txt
[2025-11-24 23:12:07] -rw-------. 1 boincer umatlas       823 Nov 24 23:12 pilotlog.txt
[2025-11-24 23:12:07] -rw-------. 1 boincer umatlas  14877285 Nov 24 23:12 log.47556137._001847.job.log.1
[2025-11-24 23:12:07] -rw-------. 1 boincer umatlas       353 Nov 24 23:12 output.list
[2025-11-24 23:12:07] -rw-r--r--. 1 boincer umatlas       620 Nov 24 23:12 runtime_log
[2025-11-24 23:12:07] -rw-------. 1 boincer umatlas  17725440 Nov 24 23:12 result.tar.gz
[2025-11-24 23:12:07] -rw-------. 1 boincer umatlas       667 Nov 24 23:12 X6iKDmQIqg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmUoJKDm8bx9vm.diag
[2025-11-24 23:12:07] -rw-r--r--. 1 boincer umatlas      9339 Nov 24 23:12 runtime_log.err
[2025-11-24 23:12:07] -rw-r--r--. 1 boincer umatlas     21779 Nov 24 23:12 stderr.txt
[2025-11-24 23:12:07] HITS file was successfully produced:
[2025-11-24 23:12:07] -rw-------. 1 boincer umatlas 918461936 Nov 24 23:10 shared/HITS.pool.root.1
[2025-11-24 23:12:07]  *** Contents of shared directory: ***
[2025-11-24 23:12:07] total 1315052
[2025-11-24 23:12:07] -rw-r--r--. 2 boincer umatlas 409783887 Nov 23 14:40 ATLAS.root_0
[2025-11-24 23:12:07] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 14:40 start_atlas.sh
[2025-11-24 23:12:07] -rw-r--r--. 2 boincer umatlas    611279 Nov 23 14:40 input.tar.gz
[2025-11-24 23:12:07] -rw-------. 1 boincer umatlas 918461936 Nov 24 23:10 HITS.pool.root.1
[2025-11-24 23:12:07] -rw-------. 1 boincer umatlas  17725440 Nov 24 23:12 result.tar.gz
23:12:09 (1967355): run_atlas exited; CPU time 334035.673634
23:12:09 (1967355): called boinc_finish(0)

</stderr_txt>
]]>

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