Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:56:46 (1824703): wrapper (7.7.26015): starting
20:56:46 (1824703): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 20:56:46] Arguments: --nthreads 8
[2025-11-23 20:56:46] Threads: 8
[2025-11-23 20:56:46] Checking for CVMFS
[2025-11-23 20:56:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 20:56:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 20:56:47] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 20:56:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 20:56:49] 2.13.3.0 9456 26538 351328 153228 0 336 23964671 32935937 13998 16776704 0 82476878 99.389 126957385 41267 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-23 20:56:49] CVMFS is ok
[2025-11-23 20:56:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 20:56:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 20:56:49] Further information can be found at the LHC@home message board.
[2025-11-23 20:56:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 20:56:49] Checking for apptainer binary...
[2025-11-23 20:56:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 20:56:49] Running /usr/bin/apptainer --version
[2025-11-23 20:56:49] apptainer version 1.4.4-1.el9
[2025-11-23 20:56:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 20:56:50] c6-5-7-2.aglt2.org
[2025-11-23 20:56:50] apptainer works
[2025-11-23 20:56:50] Set ATHENA_PROC_NUMBER=8
[2025-11-23 20:56:50] Set ATHENA_CORE_NUMBER=8
[2025-11-23 20:56:50] Starting ATLAS job with PandaID=6893857880
[2025-11-23 20:56:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
10:00:03 (1824703): BOINC client no longer exists - exiting
10:00:03 (1824703): timer handler: client dead, exiting
10:09:06 (75122): wrapper (7.7.26015): starting
10:09:06 (75122): wrapper: running run_atlas (--nthreads 10)
[2025-11-24 10:09:06] Arguments: --nthreads 10
[2025-11-24 10:09:06] Threads: 10
[2025-11-24 10:09:06] This job has been restarted, cleaning up previous attempt
[2025-11-24 10:09:06] Checking for CVMFS
[2025-11-24 10:09:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 10:09:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 10:09:06] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 10:09:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 10:09:07] 2.13.3.0 9456 27331 344608 153249 1 98 30358615 32935937 14771 16776704 0 85103974 99.401 128538673 41240 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 10:09:07] CVMFS is ok
[2025-11-24 10:09:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 10:09:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 10:09:07] Further information can be found at the LHC@home message board.
[2025-11-24 10:09:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 10:09:07] Checking for apptainer binary...
[2025-11-24 10:09:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 10:09:07] Running /usr/bin/apptainer --version
[2025-11-24 10:09:07] apptainer version 1.4.4-1.el9
[2025-11-24 10:09:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 10:09:07] c6-5-7-2.aglt2.org
[2025-11-24 10:09:07] apptainer works
[2025-11-24 10:09:07] Set ATHENA_PROC_NUMBER=10
[2025-11-24 10:09:07] Set ATHENA_CORE_NUMBER=10
[2025-11-24 10:09:07] Starting ATLAS job with PandaID=6893857880
[2025-11-24 10:09:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 05:33:08]  *** The last 200 lines of the pilot log: ***
[2025-11-25 05:33:08] 2025-11-25 10:32:19,611 | INFO     | sum of square deviations: 464225539362.2305
[2025-11-25 05:33:08] 2025-11-25 10:32:19,731 | INFO     | sum of deviations: 3357725961557.8184
[2025-11-25 05:33:08] 2025-11-25 10:32:19,731 | INFO     | mean x: 1764031849.7893357
[2025-11-25 05:33:08] 2025-11-25 10:32:19,731 | INFO     | mean y: 3205483.5096153845
[2025-11-25 05:33:08] 2025-11-25 10:32:19,731 | INFO     | intersect: -12755970901.292324
[2025-11-25 05:33:08] 2025-11-25 10:32:19,732 | INFO     | chi2: 7.560596008783699
[2025-11-25 05:33:08] 2025-11-25 10:32:19,733 | INFO     | sum of square deviations: 458165996642.89453
[2025-11-25 05:33:08] 2025-11-25 10:32:19,751 | INFO     | sum of deviations: 3806835261132.2583
[2025-11-25 05:33:08] 2025-11-25 10:32:19,752 | INFO     | mean x: 1764031697.3037753
[2025-11-25 05:33:08] 2025-11-25 10:32:19,752 | INFO     | mean y: 3216784.403863038
[2025-11-25 05:33:08] 2025-11-25 10:32:19,752 | INFO     | intersect: -14653868456.003279
[2025-11-25 05:33:08] 2025-11-25 10:32:19,753 | INFO     | chi2: 4.0932023571196705
[2025-11-25 05:33:08] 2025-11-25 10:32:19,753 | INFO     | current chi2=4.0932023571196705 (change=45.86137981232833 %)
[2025-11-25 05:33:08] 2025-11-25 10:32:19,754 | INFO     | sum of square deviations: 452159362065.21454
[2025-11-25 05:33:08] 2025-11-25 10:32:19,772 | INFO     | sum of deviations: 4091748866751.886
[2025-11-25 05:33:08] 2025-11-25 10:32:19,773 | INFO     | mean x: 1764031544.8174603
[2025-11-25 05:33:08] 2025-11-25 10:32:19,773 | INFO     | mean y: 3224011.0864197533
[2025-11-25 05:33:08] 2025-11-25 10:32:19,773 | INFO     | intersect: -15960116969.964373
[2025-11-25 05:33:08] 2025-11-25 10:32:19,774 | INFO     | chi2: 2.3704630386417818
[2025-11-25 05:33:08] 2025-11-25 10:32:19,774 | INFO     | current chi2=2.3704630386417818 (change=42.08781213763778 %)
[2025-11-25 05:33:08] 2025-11-25 10:32:19,775 | INFO     | sum of square deviations: 446205196838.7424
[2025-11-25 05:33:08] 2025-11-25 10:32:19,792 | INFO     | sum of deviations: 4111994279220.2046
[2025-11-25 05:33:08] 2025-11-25 10:32:19,793 | INFO     | mean x: 1764031392.3277237
[2025-11-25 05:33:08] 2025-11-25 10:32:19,793 | INFO     | mean y: 3224525.2426926484
[2025-11-25 05:33:08] 2025-11-25 10:32:19,793 | INFO     | intersect: -16253168374.273268
[2025-11-25 05:33:08] 2025-11-25 10:32:19,794 | INFO     | chi2: 2.2245288422652374
[2025-11-25 05:33:08] 2025-11-25 10:32:19,794 | INFO     | current chi2=2.2245288422652374 (change=6.156358230338033 %)
[2025-11-25 05:33:08] 2025-11-25 10:32:19,794 | INFO     | right removable region: 1128
[2025-11-25 05:33:08] 2025-11-25 10:32:19,795 | INFO     | sum of square deviations: 458163840426.1051
[2025-11-25 05:33:08] 2025-11-25 10:32:19,802 | INFO     | time since job start (69781s) is within the limit (172800.0s)
[2025-11-25 05:33:08] 2025-11-25 10:32:19,814 | INFO     | sum of deviations: 3039637419516.799
[2025-11-25 05:33:08] 2025-11-25 10:32:19,814 | INFO     | mean x: 1764032002.3020194
[2025-11-25 05:33:08] 2025-11-25 10:32:19,814 | INFO     | mean y: 3213476.349429324
[2025-11-25 05:33:08] 2025-11-25 10:32:19,814 | INFO     | intersect: -11700062099.557076
[2025-11-25 05:33:08] 2025-11-25 10:32:19,815 | INFO     | chi2: 5.638576342069392
[2025-11-25 05:33:08] 2025-11-25 10:32:19,815 | INFO     | current chi2=5.638576342069392 (change=25.42153640376177 %)
[2025-11-25 05:33:08] 2025-11-25 10:32:19,816 | INFO     | sum of square deviations: 452156230892.95886
[2025-11-25 05:33:08] 2025-11-25 10:32:19,834 | INFO     | sum of deviations: 2916264782777.624
[2025-11-25 05:33:08] 2025-11-25 10:32:19,835 | INFO     | mean x: 1764032154.8007054
[2025-11-25 05:33:08] 2025-11-25 10:32:19,835 | INFO     | mean y: 3216607.971781305
[2025-11-25 05:33:08] 2025-11-25 10:32:19,835 | INFO     | intersect: -11374233258.356565
[2025-11-25 05:33:08] 2025-11-25 10:32:19,836 | INFO     | chi2: 5.521779243943055
[2025-11-25 05:33:08] 2025-11-25 10:32:19,836 | INFO     | current chi2=5.521779243943055 (change=2.0713933986299824 %)
[2025-11-25 05:33:08] 2025-11-25 10:32:19,836 | INFO     | left removable region: 20
[2025-11-25 05:33:08] 2025-11-25 10:32:19,837 | INFO     | sum of square deviations: 421763862999.98785
[2025-11-25 05:33:08] 2025-11-25 10:32:19,854 | INFO     | sum of deviations: 3476747122431.822
[2025-11-25 05:33:08] 2025-11-25 10:32:19,854 | INFO     | mean x: 1764031971.8438628
[2025-11-25 05:33:08] 2025-11-25 10:32:19,854 | INFO     | mean y: 3240644.201263538
[2025-11-25 05:33:08] 2025-11-25 10:32:19,855 | INFO     | intersect: -14538292237.163822
[2025-11-25 05:33:08] 2025-11-25 10:32:19,855 | INFO     | chi2: 0.08188138556087086
[2025-11-25 05:33:08] 2025-11-25 10:32:19,856 | INFO     | current memory leak: 8.24 B/s (using 1108 data points, chi2=0.08)
[2025-11-25 05:33:08] 2025-11-25 10:32:19,857 | INFO     | could have reported an average CPU frequency of 2811 MHz (41 samples)
[2025-11-25 05:33:08] 2025-11-25 10:32:19,858 | INFO     | ..............................
[2025-11-25 05:33:08] 2025-11-25 10:32:19,858 | INFO     | . Timing measurements:
[2025-11-25 05:33:08] 2025-11-25 10:32:19,858 | INFO     | . get job = 0 s
[2025-11-25 05:33:08] 2025-11-25 10:32:19,858 | INFO     | . initial setup = 2 s
[2025-11-25 05:33:08] 2025-11-25 10:32:19,858 | INFO     | . payload setup = 6 s
[2025-11-25 05:33:08] 2025-11-25 10:32:19,858 | INFO     | . stage-in = 0 s
[2025-11-25 05:33:08] 2025-11-25 10:32:19,858 | INFO     | . payload execution = 69734 s
[2025-11-25 05:33:08] 2025-11-25 10:32:19,858 | INFO     | . stage-out = 7 s
[2025-11-25 05:33:08] 2025-11-25 10:32:19,858 | INFO     | . log creation = 1 s
[2025-11-25 05:33:08] 2025-11-25 10:32:19,858 | INFO     | ..............................
[2025-11-25 05:33:08] 2025-11-25 10:32:19,934 | INFO     | 
[2025-11-25 05:33:08] 2025-11-25 10:32:19,935 | INFO     | job summary report
[2025-11-25 05:33:08] 2025-11-25 10:32:19,935 | INFO     | --------------------------------------------------
[2025-11-25 05:33:08] 2025-11-25 10:32:19,935 | INFO     | PanDA job id: 6893857880
[2025-11-25 05:33:08] 2025-11-25 10:32:19,935 | INFO     | task id: 47523449
[2025-11-25 05:33:08] 2025-11-25 10:32:19,935 | INFO     | errors: (none)
[2025-11-25 05:33:08] 2025-11-25 10:32:19,935 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 05:33:08] 2025-11-25 10:32:19,935 | INFO     | pilot state: finished 
[2025-11-25 05:33:08] 2025-11-25 10:32:19,935 | INFO     | transexitcode: 0
[2025-11-25 05:33:08] 2025-11-25 10:32:19,935 | INFO     | exeerrorcode: 0
[2025-11-25 05:33:08] 2025-11-25 10:32:19,935 | INFO     | exeerrordiag: 
[2025-11-25 05:33:08] 2025-11-25 10:32:19,935 | INFO     | exitcode: 0
[2025-11-25 05:33:08] 2025-11-25 10:32:19,936 | INFO     | exitmsg: OK
[2025-11-25 05:33:08] 2025-11-25 10:32:19,936 | INFO     | cpuconsumptiontime: 240493 s
[2025-11-25 05:33:08] 2025-11-25 10:32:19,936 | INFO     | nevents: 1000
[2025-11-25 05:33:08] 2025-11-25 10:32:19,936 | INFO     | neventsw: 0
[2025-11-25 05:33:08] 2025-11-25 10:32:19,936 | INFO     | pid: 105682
[2025-11-25 05:33:08] 2025-11-25 10:32:19,936 | INFO     | pgrp: 105682
[2025-11-25 05:33:08] 2025-11-25 10:32:19,936 | INFO     | corecount: 10
[2025-11-25 05:33:08] 2025-11-25 10:32:19,936 | INFO     | event service: False
[2025-11-25 05:33:08] 2025-11-25 10:32:19,936 | INFO     | sizes: {0: 2284032, 1: 2284287, 5: 2284549, 12: 2284605, 69744: 2339231, 69752: 2348230, 69755: 2348414, 69766: 2348756}
[2025-11-25 05:33:08] 2025-11-25 10:32:19,936 | INFO     | --------------------------------------------------
[2025-11-25 05:33:08] 2025-11-25 10:32:19,936 | INFO     | 
[2025-11-25 05:33:08] 2025-11-25 10:32:19,937 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-25 05:33:08] 2025-11-25 10:32:19,973 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 05:33:08] 2025-11-25 10:32:19,973 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 05:33:08] 2025-11-25 10:32:19,973 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 05:33:08] 2025-11-25 10:32:19,973 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 05:33:08] 2025-11-25 10:32:19,974 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 05:33:08] 2025-11-25 10:32:19,974 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 05:33:08] 2025-11-25 10:32:19,974 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 05:33:08] 2025-11-25 10:32:19,974 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 05:33:08] 2025-11-25 10:32:19,974 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 05:33:08] 2025-11-25 10:32:19,974 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 05:33:08] 2025-11-25 10:32:19,974 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 05:33:08] 2025-11-25 10:32:19,974 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 05:33:08] 2025-11-25 10:32:19,974 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 05:33:08] 2025-11-25 10:32:19,974 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 05:33:08] 2025-11-25 10:32:19,974 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 05:33:08] 2025-11-25 10:32:19,974 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 05:33:08] 2025-11-25 10:32:19,974 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 05:33:08] 2025-11-25 10:32:19,974 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 05:33:08] 2025-11-25 10:32:19,974 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 05:33:08] 2025-11-25 10:32:19,974 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 05:33:08] 2025-11-25 10:32:19,975 | INFO     | job 6893857880 has completed (purged errors)
[2025-11-25 05:33:08] 2025-11-25 10:32:19,975 | INFO     | overall cleanup function is called
[2025-11-25 05:33:08] 2025-11-25 10:32:20,995 | INFO     | --- collectZombieJob: --- 10, [105682]
[2025-11-25 05:33:08] 2025-11-25 10:32:20,996 | INFO     | zombie collector waiting for pid 105682
[2025-11-25 05:33:08] 2025-11-25 10:32:20,996 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 05:33:08] 2025-11-25 10:32:20,996 | INFO     | collected zombie processes
[2025-11-25 05:33:08] 2025-11-25 10:32:20,996 | INFO     | will attempt to kill all subprocesses of pid=105682
[2025-11-25 05:33:08] 2025-11-25 10:32:21,594 | INFO     | process IDs to be killed: [105682] (in reverse order)
[2025-11-25 05:33:08] 2025-11-25 10:32:21,717 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 05:33:08] 2025-11-25 10:32:21,717 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 05:33:08] 2025-11-25 10:32:21,731 | INFO     | did not find any defunct processes belonging to 105682
[2025-11-25 05:33:08] 2025-11-25 10:32:21,745 | INFO     | did not find any defunct processes belonging to 105682
[2025-11-25 05:33:08] 2025-11-25 10:32:21,747 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 05:33:08] 2025-11-25 10:32:21,747 | INFO     | ready for new job
[2025-11-25 05:33:08] 2025-11-25 10:32:21,747 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 05:33:08] 2025-11-25 10:32:21,752 | INFO     | ***************************************
[2025-11-25 05:33:08] 2025-11-25 10:32:21,753 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 05:33:08] 2025-11-25 10:32:21,753 | INFO     | ***************************************
[2025-11-25 05:33:08] 2025-11-25 10:32:21,753 | INFO     | 
[2025-11-25 05:33:08] 2025-11-25 10:32:21,756 | INFO     | architecture information:
[2025-11-25 05:33:08] 2025-11-25 10:32:21,757 | INFO     | executing command: cat /etc/os-release
[2025-11-25 05:33:08] 2025-11-25 10:32:21,787 | INFO     | cat /etc/os-release:
[2025-11-25 05:33:08] NAME="CentOS Linux"
[2025-11-25 05:33:08] VERSION="7 (Core)"
[2025-11-25 05:33:08] ID="centos"
[2025-11-25 05:33:08] ID_LIKE="rhel fedora"
[2025-11-25 05:33:08] VERSION_ID="7"
[2025-11-25 05:33:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 05:33:08] ANSI_COLOR="0;31"
[2025-11-25 05:33:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 05:33:08] HOME_URL="https://www.centos.org/"
[2025-11-25 05:33:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 05:33:08] 
[2025-11-25 05:33:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 05:33:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 05:33:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 05:33:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 05:33:08] 
[2025-11-25 05:33:08] 2025-11-25 10:32:21,787 | INFO     | ***************************************
[2025-11-25 05:33:08] 2025-11-25 10:32:22,290 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-25 05:33:08] 2025-11-25 10:32:22,311 | INFO     | sufficient remaining disk space (69663195136 B)
[2025-11-25 05:33:08] 2025-11-25 10:32:22,311 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 05:33:08] 2025-11-25 10:32:22,311 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 05:33:08] 2025-11-25 10:32:22,311 | INFO     | update_server=False
[2025-11-25 05:33:08] 2025-11-25 10:32:22,311 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 05:33:08] 2025-11-25 10:32:22,312 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 05:33:08] 2025-11-25 10:32:22,770 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 05:33:08] 2025-11-25 10:32:22,771 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 05:33:08] 2025-11-25 10:32:22,771 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 05:33:08] 2025-11-25 10:32:22,771 | INFO     | will abort loop
[2025-11-25 05:33:08] 2025-11-25 10:32:22,918 | INFO     | all job control threads have been joined
[2025-11-25 05:33:08] 2025-11-25 10:32:23,044 | INFO     | all payload control threads have been joined
[2025-11-25 05:33:08] 2025-11-25 10:32:23,316 | INFO     | [job] retrieve thread has finished
[2025-11-25 05:33:08] 2025-11-25 10:32:23,369 | INFO     | all data control threads have been joined
[2025-11-25 05:33:08] 2025-11-25 10:32:23,523 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 05:33:08] 2025-11-25 10:32:23,661 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 05:33:08] 2025-11-25 10:32:23,677 | INFO     | [job] validate thread has finished
[2025-11-25 05:33:08] 2025-11-25 10:32:23,775 | INFO     | [job] job monitor thread has finished
[2025-11-25 05:33:08] 2025-11-25 10:32:23,866 | INFO     | [payload] validate_post thread has finished
[2025-11-25 05:33:08] 2025-11-25 10:32:23,933 | INFO     | [job] control thread has finished
[2025-11-25 05:33:08] 2025-11-25 10:32:24,049 | INFO     | [payload] control thread has finished
[2025-11-25 05:33:08] 2025-11-25 10:32:24,312 | INFO     | [payload] failed_post thread has finished
[2025-11-25 05:33:08] 2025-11-25 10:32:24,320 | INFO     | [data] copytool_out thread has finished
[2025-11-25 05:33:08] 2025-11-25 10:32:24,376 | INFO     | [data] control thread has finished
[2025-11-25 05:33:08] 2025-11-25 10:32:24,445 | INFO     | [data] copytool_in thread has finished
[2025-11-25 05:33:08] 2025-11-25 10:32:24,478 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 05:33:08] 2025-11-25 10:32:24,539 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 05:33:08] 2025-11-25 10:32:24,752 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 05:33:08] 2025-11-25 10:32:24,952 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 05:33:08] 2025-11-25 10:32:25,958 | INFO     | [job] queue monitor thread has finished
[2025-11-25 05:33:08] 2025-11-25 10:32:28,487 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 05:33:08] 2025-11-25 10:32:35,344 | INFO     | [monitor] cgroup control has ended
[2025-11-25 05:33:08] 2025-11-25 10:32:35,870 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140529065572160)>', '<ExcThread(monitor, started 140528435848960)>']
[2025-11-25 05:33:08] 2025-11-25 10:32:40,895 | INFO     | all workflow threads have been joined
[2025-11-25 05:33:08] 2025-11-25 10:32:40,896 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 05:33:08] 2025-11-25 10:32:40,896 | INFO     | traces error code: 0
[2025-11-25 05:33:08] 2025-11-25 10:32:40,896 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 05:33:08] 2025-11-25 10:32:53,458 | INFO     | PID=86172 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 05:33:08] 2025-11-25 10:32:53,459 | INFO     | .. there are 31 such processes running
[2025-11-25 05:33:08] 2025-11-25 10:32:53,459 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 05:33:08] 2025-11-25 10:32:53,459 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 05:33:08] 2025-11-25 10:32:53,459 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 05:33:08] 2025-11-25 10:32:53,459 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 05:33:08] 2025-11-25 10:32:53,459 | INFO     | [monitor] control thread has ended
[2025-11-25 05:33:08] 2025-11-25 10:32:54,465 [wrapper] ==== pilot stdout END ====
[2025-11-25 05:33:08] 2025-11-25 10:32:54,487 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 05:33:08] 2025-11-25 10:32:54,490 [wrapper] pilotpid: 86172
[2025-11-25 05:33:08] 2025-11-25 10:32:54,493 [wrapper] Pilot exit status: 0
[2025-11-25 05:33:08] 2025-11-25 10:32:54,675 [wrapper] pandaids: 6893857880 6893857880
[2025-11-25 05:33:08] 2025-11-25 10:32:54,784 [wrapper] cleanup supervisor_pilot 3572182 86173
[2025-11-25 05:33:08] 2025-11-25 10:32:54,789 [wrapper] Test setup, not cleaning
[2025-11-25 05:33:08] 2025-11-25 10:32:54,792 [wrapper] apfmon messages muted
[2025-11-25 05:33:08] 2025-11-25 10:32:54,796 [wrapper] ==== wrapper stdout END ====
[2025-11-25 05:33:08] 2025-11-25 10:32:54,799 [wrapper] ==== wrapper stderr END ====
[2025-11-25 05:33:08]  *** Error codes and diagnostics ***
[2025-11-25 05:33:08]     "exeErrorCode": 0,
[2025-11-25 05:33:08]     "exeErrorDiag": "",
[2025-11-25 05:33:08]     "pilotErrorCode": 0,
[2025-11-25 05:33:08]     "pilotErrorDiag": "",
[2025-11-25 05:33:08]  *** Listing of results directory ***
[2025-11-25 05:33:08] total 1710844
[2025-11-25 05:33:08] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-25 05:33:08] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 08:11 queuedata.json
[2025-11-25 05:33:08] -rwx------. 1 boincer umatlas     36292 Nov 20 08:12 runpilot2-wrapper.sh
[2025-11-25 05:33:08] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 08:12 pilot3.tar.gz
[2025-11-25 05:33:08] -rw-r--r--. 1 boincer umatlas       100 Nov 23 20:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 05:33:08] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 23 20:56 run_atlas
[2025-11-25 05:33:08] -rw-r--r--. 1 boincer umatlas       105 Nov 23 20:56 job.xml
[2025-11-25 05:33:08] -rw-r--r--. 3 boincer umatlas 410288146 Nov 23 20:56 EVNT.47493127._000502.pool.root.1
[2025-11-25 05:33:08] -rw-r--r--. 3 boincer umatlas 410288146 Nov 23 20:56 ATLAS.root_0
[2025-11-25 05:33:08] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 20:56 start_atlas.sh
[2025-11-25 05:33:08] drwxrwx--x. 2 boincer umatlas      4096 Nov 23 20:56 shared
[2025-11-25 05:33:08] -rw-r--r--. 2 boincer umatlas    590094 Nov 23 20:56 input.tar.gz
[2025-11-25 05:33:08] -rw-r--r--. 1 boincer umatlas         0 Nov 23 20:56 boinc_lockfile
[2025-11-25 05:33:08] -rw-r--r--. 1 boincer umatlas      2785 Nov 24 10:09 pandaJob.out
[2025-11-25 05:33:08] -rw-------. 1 boincer umatlas        57 Nov 24 10:09 setup.sh.local
[2025-11-25 05:33:08] -rw-------. 1 boincer umatlas    988283 Nov 24 10:09 agis_schedconf.cvmfs.json
[2025-11-25 05:33:08] -rw-r--r--. 1 boincer umatlas       533 Nov 25 05:19 boinc_task_state.xml
[2025-11-25 05:33:08] -rw-r--r--. 1 boincer umatlas      6842 Nov 25 05:27 init_data.xml
[2025-11-25 05:33:08] -rw-------. 1 boincer umatlas 906332293 Nov 25 05:30 HITS.47523449._005013.pool.root.1
[2025-11-25 05:33:08] -rw-------. 1 boincer umatlas      1069 Nov 25 05:31 memory_monitor_summary.json
[2025-11-25 05:33:08] -rw-------. 1 boincer umatlas   1516240 Nov 25 05:32 agis_ddmendpoints.agis.ALL.json
[2025-11-25 05:33:08] -rw-------. 1 boincer umatlas   2416035 Nov 25 05:32 log.47523449._005013.job.log.tgz.1
[2025-11-25 05:33:08] -rw-------. 1 boincer umatlas        96 Nov 25 05:32 pilot_heartbeat.json
[2025-11-25 05:33:08] -rw-------. 1 boincer umatlas      7956 Nov 25 05:32 heartbeat.json
[2025-11-25 05:33:08] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 05:32 boinc_mmap_file
[2025-11-25 05:33:08] -rw-r--r--. 1 boincer umatlas        29 Nov 25 05:32 wrapper_checkpoint.txt
[2025-11-25 05:33:08] -rw-------. 1 boincer umatlas       821 Nov 25 05:32 pilotlog.txt
[2025-11-25 05:33:08] -rw-------. 1 boincer umatlas   8119971 Nov 25 05:32 log.47523449._005013.job.log.1
[2025-11-25 05:33:08] -rw-------. 1 boincer umatlas       353 Nov 25 05:32 output.list
[2025-11-25 05:33:08] -rw-r--r--. 1 boincer umatlas       620 Nov 25 05:32 runtime_log
[2025-11-25 05:33:08] -rw-------. 1 boincer umatlas  10557440 Nov 25 05:32 result.tar.gz
[2025-11-25 05:33:08] -rw-------. 1 boincer umatlas       789 Nov 25 05:32 vatMDmNdJg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmmtHKDmYDHRpm.diag
[2025-11-25 05:33:08] -rw-r--r--. 1 boincer umatlas      9430 Nov 25 05:32 runtime_log.err
[2025-11-25 05:33:08] -rw-r--r--. 1 boincer umatlas     23470 Nov 25 05:33 stderr.txt
[2025-11-25 05:33:08] HITS file was successfully produced:
[2025-11-25 05:33:08] -rw-------. 1 boincer umatlas 906332293 Nov 25 05:30 shared/HITS.pool.root.1
[2025-11-25 05:33:08]  *** Contents of shared directory: ***
[2025-11-25 05:33:08] total 1296684
[2025-11-25 05:33:08] -rw-r--r--. 3 boincer umatlas 410288146 Nov 23 20:56 ATLAS.root_0
[2025-11-25 05:33:08] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 20:56 start_atlas.sh
[2025-11-25 05:33:08] -rw-r--r--. 2 boincer umatlas    590094 Nov 23 20:56 input.tar.gz
[2025-11-25 05:33:08] -rw-------. 1 boincer umatlas 906332293 Nov 25 05:30 HITS.pool.root.1
[2025-11-25 05:33:08] -rw-------. 1 boincer umatlas  10557440 Nov 25 05:32 result.tar.gz
05:33:10 (75122): run_atlas exited; CPU time 241783.123327
05:33:10 (75122): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN