Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:55:25 (1608290): wrapper (7.7.26015): starting
10:55:25 (1608290): wrapper: running run_atlas (--nthreads 3)
[2025-11-26 10:55:25] Arguments: --nthreads 3
[2025-11-26 10:55:25] Threads: 3
[2025-11-26 10:55:25] Checking for CVMFS
[2025-11-26 10:55:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 10:55:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 10:55:25] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 10:55:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 10:55:25] 2.9.2.0 52203 11688 98532 153316 3 81 27926341 36864000 0 130560 0 4340277 99.938 576528 5178 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 10:55:25] CVMFS is ok
[2025-11-26 10:55:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 10:55:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 10:55:25] Further information can be found at the LHC@home message board.
[2025-11-26 10:55:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 10:55:25] Checking for apptainer binary...
[2025-11-26 10:55:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 10:55:25] Running /usr/bin/apptainer --version
[2025-11-26 10:55:25] apptainer version 1.4.1-1.1
[2025-11-26 10:55:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 10:55:25] thA371b
[2025-11-26 10:55:25] apptainer works
[2025-11-26 10:55:25] Set ATHENA_PROC_NUMBER=3
[2025-11-26 10:55:25] Set ATHENA_CORE_NUMBER=3
[2025-11-26 10:55:25] Starting ATLAS job with PandaID=6895351139
[2025-11-26 10:55:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 19:01:21]  *** The last 200 lines of the pilot log: ***
[2025-11-26 19:01:21] 2025-11-26 18:00:50,991 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 19:01:21] 2025-11-26 18:00:51,008 | INFO     | all payload control threads have been joined
[2025-11-26 19:01:21] 2025-11-26 18:00:51,061 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 19:01:21] 2025-11-26 18:00:51,061 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 19:01:21] 2025-11-26 18:00:51,061 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 19:01:21] 2025-11-26 18:00:51,061 | INFO     | will abort loop
[2025-11-26 19:01:21] 2025-11-26 18:00:51,708 | INFO     | all data control threads have been joined
[2025-11-26 19:01:21] 2025-11-26 18:00:51,921 | INFO     | all job control threads have been joined
[2025-11-26 19:01:21] 2025-11-26 18:00:51,996 | INFO     | [job] retrieve thread has finished
[2025-11-26 19:01:21] 2025-11-26 18:00:51,996 | INFO     | [job] queue monitor thread has finished
[2025-11-26 19:01:21] 2025-11-26 18:00:52,014 | INFO     | [payload] control thread has finished
[2025-11-26 19:01:21] 2025-11-26 18:00:52,067 | INFO     | [job] job monitor thread has finished
[2025-11-26 19:01:21] 2025-11-26 18:00:52,073 | INFO     | [job] validate thread has finished
[2025-11-26 19:01:21] 2025-11-26 18:00:52,083 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 19:01:21] 2025-11-26 18:00:52,171 | INFO     | [payload] validate_post thread has finished
[2025-11-26 19:01:21] 2025-11-26 18:00:52,189 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 19:01:21] 2025-11-26 18:00:52,572 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 19:01:21] 2025-11-26 18:00:52,714 | INFO     | [data] control thread has finished
[2025-11-26 19:01:21] 2025-11-26 18:00:52,878 | INFO     | [data] copytool_in thread has finished
[2025-11-26 19:01:21] 2025-11-26 18:00:52,927 | INFO     | [job] control thread has finished
[2025-11-26 19:01:21] 2025-11-26 18:00:53,242 | INFO     | [payload] failed_post thread has finished
[2025-11-26 19:01:21] 2025-11-26 18:00:53,432 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 19:01:21] 2025-11-26 18:00:54,195 | INFO     | [data] copytool_out thread has finished
[2025-11-26 19:01:21] 2025-11-26 18:00:54,998 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 19:01:21] 2025-11-26 18:01:01,177 | INFO     | job.realtimelogging is not enabled
[2025-11-26 19:01:21] 2025-11-26 18:01:02,183 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 19:01:21] 2025-11-26 18:01:09,750 | INFO     | [monitor] cgroup control has ended
[2025-11-26 19:01:21] 2025-11-26 18:01:10,614 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139702250170176)>', '<ExcThread(monitor, started 139701310707456)>']
[2025-11-26 19:01:21] 2025-11-26 18:01:15,633 | INFO     | all workflow threads have been joined
[2025-11-26 19:01:21] 2025-11-26 18:01:15,633 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 19:01:21] 2025-11-26 18:01:15,634 | INFO     | traces error code: 0
[2025-11-26 19:01:21] 2025-11-26 18:01:15,634 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 19:01:21] 2025-11-26 18:01:21,113 | INFO     | PID=1612016 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 19:01:21] 2025-11-26 18:01:21,113 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 19:01:21] 2025-11-26 18:01:21,114 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 19:01:21] 2025-11-26 18:01:21,114 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 19:01:21] 2025-11-26 18:01:21,114 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 19:01:21] 2025-11-26 18:01:21,114 | CRITICAL | thread 'MainThread' is not alive
[2025-11-26 19:01:21] 2025-11-26 18:01:21,114 | INFO     | [monitor] control thread has ended
[2025-11-26 19:01:21] 2025-11-26 18:01:21,160 [wrapper] ==== pilot stdout END ====
[2025-11-26 19:01:21] 2025-11-26 18:01:21,162 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 19:01:21] 2025-11-26 18:01:21,165 [wrapper] pilotpid: 1612016
[2025-11-26 19:01:21] 2025-11-26 18:01:21,167 [wrapper] Pilot exit status: 0
[2025-11-26 19:01:21] 2025-11-26 18:01:21,174 [wrapper] pandaids: 6895351139
[2025-11-26 19:01:21] 2025-11-26 18:01:21,190 [wrapper] cleanup supervisor_pilot 1669077 1612017
[2025-11-26 19:01:21] 2025-11-26 18:01:21,192 [wrapper] Test setup, not cleaning
[2025-11-26 19:01:21] 2025-11-26 18:01:21,194 [wrapper] apfmon messages muted
[2025-11-26 19:01:21] 2025-11-26 18:01:21,196 [wrapper] ==== wrapper stdout END ====
[2025-11-26 19:01:21] 2025-11-26 18:01:21,199 [wrapper] ==== wrapper stderr END ====
[2025-11-26 19:01:21]  *** Error codes and diagnostics ***
[2025-11-26 19:01:21]     "exeErrorCode": 0,
[2025-11-26 19:01:21]     "exeErrorDiag": "",
[2025-11-26 19:01:21]     "pilotErrorCode": 0,
[2025-11-26 19:01:21]     "pilotErrorDiag": "",
[2025-11-26 19:01:21]  *** Listing of results directory ***
[2025-11-26 19:01:21] total 1326700
[2025-11-26 19:01:21] -rw-r--r-- 1 boinc boinc    576529 Nov 23 00:08 pilot3.tar.gz
[2025-11-26 19:01:21] -rwx------ 1 boinc boinc     36292 Nov 23 00:17 runpilot2-wrapper.sh
[2025-11-26 19:01:21] -rw-r--r-- 1 boinc boinc      5112 Nov 23 00:17 queuedata.json
[2025-11-26 19:01:21] -rw-r--r-- 1 boinc boinc       100 Nov 26 10:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 19:01:21] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 10:55 run_atlas
[2025-11-26 19:01:21] -rw-r--r-- 1 boinc boinc       105 Nov 26 10:55 job.xml
[2025-11-26 19:01:21] -rw-r--r-- 2 boinc boinc 409897018 Nov 26 10:55 EVNT.47483658._000539.pool.root.1
[2025-11-26 19:01:21] -rw-r--r-- 2 boinc boinc    590100 Nov 26 10:55 input.tar.gz
[2025-11-26 19:01:21] -rw-r--r-- 2 boinc boinc     15847 Nov 26 10:55 start_atlas.sh
[2025-11-26 19:01:21] drwxrwx--x 2 boinc boinc      4096 Nov 26 10:55 shared
[2025-11-26 19:01:21] -rw-r--r-- 1 boinc boinc         0 Nov 26 10:55 boinc_setup_complete
[2025-11-26 19:01:21] -rw-r--r-- 1 boinc boinc      6441 Nov 26 10:55 init_data.xml
[2025-11-26 19:01:21] -rw-r--r-- 1 boinc boinc         0 Nov 26 10:55 boinc_lockfile
[2025-11-26 19:01:21] -rw-r--r-- 1 boinc boinc      2784 Nov 26 10:55 pandaJob.out
[2025-11-26 19:01:21] -rw------- 1 boinc boinc    991827 Nov 26 10:55 agis_schedconf.cvmfs.json
[2025-11-26 19:01:21] drwx------ 5 boinc boinc      4096 Nov 26 10:55 pilot3
[2025-11-26 19:01:21] -rw-r--r-- 1 boinc boinc       531 Nov 26 18:57 boinc_task_state.xml
[2025-11-26 19:01:21] -rw------- 1 boinc boinc 934200395 Nov 26 19:00 HITS.47556137._005350.pool.root.1
[2025-11-26 19:01:21] -rw------- 1 boinc boinc      1026 Nov 26 19:00 memory_monitor_summary.json
[2025-11-26 19:01:21] -rw------- 1 boinc boinc   1516240 Nov 26 19:00 agis_ddmendpoints.agis.ALL.json
[2025-11-26 19:01:21] -rw------- 1 boinc boinc   1170153 Nov 26 19:00 log.47556137._005350.job.log.tgz.1
[2025-11-26 19:01:21] -rw------- 1 boinc boinc      8566 Nov 26 19:00 heartbeat.json
[2025-11-26 19:01:21] -rw-r--r-- 1 boinc boinc      8192 Nov 26 19:01 boinc_mmap_file
[2025-11-26 19:01:21] -rw-r--r-- 1 boinc boinc        28 Nov 26 19:01 wrapper_checkpoint.txt
[2025-11-26 19:01:21] -rw------- 1 boinc boinc       817 Nov 26 19:01 pilotlog.txt
[2025-11-26 19:01:21] -rw------- 1 boinc boinc        95 Nov 26 19:01 pilot_heartbeat.json
[2025-11-26 19:01:21] -rw------- 1 boinc boinc   4099595 Nov 26 19:01 log.47556137._005350.job.log.1
[2025-11-26 19:01:21] -rw------- 1 boinc boinc       353 Nov 26 19:01 output.list
[2025-11-26 19:01:21] -rw-r--r-- 1 boinc boinc       620 Nov 26 19:01 runtime_log
[2025-11-26 19:01:21] -rw------- 1 boinc boinc   5294080 Nov 26 19:01 result.tar.gz
[2025-11-26 19:01:21] -rw-r--r-- 1 boinc boinc      8903 Nov 26 19:01 runtime_log.err
[2025-11-26 19:01:21] -rw------- 1 boinc boinc       666 Nov 26 19:01 XLENDmB2Bh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmFSKKDmsIRFEn.diag
[2025-11-26 19:01:21] -rw-r--r-- 1 boinc boinc      7482 Nov 26 19:01 stderr.txt
[2025-11-26 19:01:21] HITS file was successfully produced:
[2025-11-26 19:01:21] -rw------- 1 boinc boinc 934200395 Nov 26 19:00 shared/HITS.pool.root.1
[2025-11-26 19:01:21]  *** Contents of shared directory: ***
[2025-11-26 19:01:21] total 1318376
[2025-11-26 19:01:21] -rw-r--r-- 2 boinc boinc 409897018 Nov 26 10:55 ATLAS.root_0
[2025-11-26 19:01:21] -rw-r--r-- 2 boinc boinc    590100 Nov 26 10:55 input.tar.gz
[2025-11-26 19:01:21] -rw-r--r-- 2 boinc boinc     15847 Nov 26 10:55 start_atlas.sh
[2025-11-26 19:01:21] -rw------- 1 boinc boinc 934200395 Nov 26 19:00 HITS.pool.root.1
[2025-11-26 19:01:21] -rw------- 1 boinc boinc   5294080 Nov 26 19:01 result.tar.gz
19:01:22 (1608290): run_atlas exited; CPU time 85965.277761
19:01:22 (1608290): called boinc_finish(0)

</stderr_txt>
]]>

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