Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:17:28 (90068): wrapper (7.7.26015): starting
15:17:28 (90068): wrapper: running run_atlas (--nthreads 12)
[2025-11-23 15:17:28] Arguments: --nthreads 12
[2025-11-23 15:17:28] Threads: 12
[2025-11-23 15:17:28] Checking for CVMFS
[2025-11-23 15:17:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 15:17:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 15:17:32] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 15:17:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 15:17:32] 2.8.1.0 90351 0 30200 153220 4 1 3601069 4096000 0 130560 0 0 0.000 1292 531 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-23 15:17:32] CVMFS is ok
[2025-11-23 15:17:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 15:17:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 15:17:32] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-23 15:17:32] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-23 15:17:32] Further information can be found at the LHC@home message board.
[2025-11-23 15:17:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 15:17:32] Checking for apptainer binary...
[2025-11-23 15:17:32] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin)
[2025-11-23 15:17:32] apptainer is not installed, using version from CVMFS
[2025-11-23 15:17:32] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 15:17:33] farmville.blisteringsheep.pec
[2025-11-23 15:17:33] apptainer works
[2025-11-23 15:17:33] Set ATHENA_PROC_NUMBER=12
[2025-11-23 15:17:33] Set ATHENA_CORE_NUMBER=12
[2025-11-23 15:17:33] Starting ATLAS job with PandaID=6895351010
[2025-11-23 15:17:33] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 19:13:13]  *** The last 200 lines of the pilot log: ***
[2025-11-23 19:13:13] 2025-11-24 00:12:14,799 | INFO     | monitor loop #1046: job 0:6895351010 is in state 'finished'
[2025-11-23 19:13:13] 2025-11-24 00:12:14,799 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 19:13:13] 2025-11-24 00:12:14,975 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-23 19:13:13] 2025-11-24 00:12:14,979 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 2668.7359374999996
[2025-11-23 19:13:13] 2025-11-24 00:12:14,983 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6895351010/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 19:13:13] 2025-11-24 00:12:14,984 | INFO     | extracted standard info from prmon json
[2025-11-23 19:13:13] 2025-11-24 00:12:14,984 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 19:13:13] 2025-11-24 00:12:14,984 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 19:13:13] 2025-11-24 00:12:14,987 | INFO     | fitting pss+swap vs Time
[2025-11-23 19:13:13] 2025-11-24 00:12:14,987 | INFO     | sum of square deviations: 3822199420.709975
[2025-11-23 19:13:13] 2025-11-24 00:12:14,988 | INFO     | sum of deviations: 118757455939.34213
[2025-11-23 19:13:13] 2025-11-24 00:12:14,988 | INFO     | mean x: 1763936100.3852813
[2025-11-23 19:13:13] 2025-11-24 00:12:14,988 | INFO     | mean y: 3521517.2770562773
[2025-11-23 19:13:13] 2025-11-24 00:12:14,988 | INFO     | intersect: -54802766869.00734
[2025-11-23 19:13:13] 2025-11-24 00:12:14,988 | INFO     | chi2: 4.706043177482261
[2025-11-23 19:13:13] 2025-11-24 00:12:14,988 | INFO     | sum of square deviations: 3579366197.451339
[2025-11-23 19:13:13] 2025-11-24 00:12:14,989 | INFO     | sum of deviations: 200314738182.68146
[2025-11-23 19:13:13] 2025-11-24 00:12:14,989 | INFO     | mean x: 1763935947.8938053
[2025-11-23 19:13:13] 2025-11-24 00:12:14,989 | INFO     | mean y: 3572549.9867256638
[2025-11-23 19:13:13] 2025-11-24 00:12:14,989 | INFO     | intersect: -98712889550.19247
[2025-11-23 19:13:13] 2025-11-24 00:12:14,990 | INFO     | chi2: 2.089607054261523
[2025-11-23 19:13:13] 2025-11-24 00:12:14,990 | INFO     | current chi2=2.089607054261523 (change=55.59736756645176 %)
[2025-11-23 19:13:13] 2025-11-24 00:12:14,990 | INFO     | sum of square deviations: 3347003806.5339193
[2025-11-23 19:13:13] 2025-11-24 00:12:14,991 | INFO     | sum of deviations: 200105962151.05435
[2025-11-23 19:13:13] 2025-11-24 00:12:14,991 | INFO     | mean x: 1763935795.3891404
[2025-11-23 19:13:13] 2025-11-24 00:12:14,991 | INFO     | mean y: 3572309.0226244344
[2025-11-23 19:13:13] 2025-11-24 00:12:14,991 | INFO     | intersect: -105456143278.98
[2025-11-23 19:13:13] 2025-11-24 00:12:14,991 | INFO     | chi2: 1.9941948866647372
[2025-11-23 19:13:13] 2025-11-24 00:12:14,991 | INFO     | current chi2=1.9941948866647372 (change=4.566033953714074 %)
[2025-11-23 19:13:13] 2025-11-24 00:12:14,991 | INFO     | right removable region: 220
[2025-11-23 19:13:13] 2025-11-24 00:12:14,991 | INFO     | sum of square deviations: 3579339723.0088277
[2025-11-23 19:13:13] 2025-11-24 00:12:14,992 | INFO     | sum of deviations: 50007521143.02653
[2025-11-23 19:13:13] 2025-11-24 00:12:14,992 | INFO     | mean x: 1763936252.8849556
[2025-11-23 19:13:13] 2025-11-24 00:12:14,992 | INFO     | mean y: 3564407.1548672565
[2025-11-23 19:13:13] 2025-11-24 00:12:14,992 | INFO     | intersect: -24640667850.001534
[2025-11-23 19:13:13] 2025-11-24 00:12:14,993 | INFO     | chi2: 2.816357431899033
[2025-11-23 19:13:13] 2025-11-24 00:12:14,993 | INFO     | current chi2=2.816357431899033 (change=40.15444980668903 %)
[2025-11-23 19:13:13] 2025-11-24 00:12:14,993 | INFO     | sum of square deviations: 3346964644.7511096
[2025-11-23 19:13:13] 2025-11-24 00:12:14,994 | INFO     | sum of deviations: 34283535867.34389
[2025-11-23 19:13:13] 2025-11-24 00:12:14,994 | INFO     | mean x: 1763936405.393665
[2025-11-23 19:13:13] 2025-11-24 00:12:14,994 | INFO     | mean y: 3574700.6742081447
[2025-11-23 19:13:13] 2025-11-24 00:12:14,994 | INFO     | intersect: -18064729999.486256
[2025-11-23 19:13:13] 2025-11-24 00:12:14,994 | INFO     | chi2: 2.7774051497541463
[2025-11-23 19:13:13] 2025-11-24 00:12:14,994 | INFO     | current chi2=2.7774051497541463 (change=1.3830731037083475 %)
[2025-11-23 19:13:13] 2025-11-24 00:12:14,994 | INFO     | left removable region: 20
[2025-11-23 19:13:13] 2025-11-24 00:12:14,995 | INFO     | sum of square deviations: 2480647581.1950126
[2025-11-23 19:13:13] 2025-11-24 00:12:14,995 | INFO     | sum of deviations: 92186659180.325
[2025-11-23 19:13:13] 2025-11-24 00:12:14,995 | INFO     | mean x: 1763936374.905
[2025-11-23 19:13:13] 2025-11-24 00:12:14,995 | INFO     | mean y: 3646343.175
[2025-11-23 19:13:13] 2025-11-24 00:12:14,996 | INFO     | intersect: -65548350095.92005
[2025-11-23 19:13:13] 2025-11-24 00:12:14,996 | INFO     | chi2: 0.006099409799657002
[2025-11-23 19:13:13] 2025-11-24 00:12:14,996 | INFO     | current memory leak: 37.16 B/s (using 200 data points, chi2=0.01)
[2025-11-23 19:13:13] 2025-11-24 00:12:14,996 | INFO     | could have reported an average CPU frequency of 2745 MHz (11 samples)
[2025-11-23 19:13:13] 2025-11-24 00:12:14,996 | INFO     | ..............................
[2025-11-23 19:13:13] 2025-11-24 00:12:14,996 | INFO     | . Timing measurements:
[2025-11-23 19:13:13] 2025-11-24 00:12:14,996 | INFO     | . get job = 0 s
[2025-11-23 19:13:13] 2025-11-24 00:12:14,997 | INFO     | . initial setup = 2 s
[2025-11-23 19:13:13] 2025-11-24 00:12:14,997 | INFO     | . payload setup = 3 s
[2025-11-23 19:13:13] 2025-11-24 00:12:14,997 | INFO     | . stage-in = 0 s
[2025-11-23 19:13:13] 2025-11-24 00:12:14,997 | INFO     | . payload execution = 14038 s
[2025-11-23 19:13:13] 2025-11-24 00:12:14,997 | INFO     | . stage-out = 3 s
[2025-11-23 19:13:13] 2025-11-24 00:12:14,997 | INFO     | . log creation = 0 s
[2025-11-23 19:13:13] 2025-11-24 00:12:14,997 | INFO     | ..............................
[2025-11-23 19:13:13] 2025-11-24 00:12:15,047 | INFO     | 
[2025-11-23 19:13:13] 2025-11-24 00:12:15,047 | INFO     | job summary report
[2025-11-23 19:13:13] 2025-11-24 00:12:15,047 | INFO     | --------------------------------------------------
[2025-11-23 19:13:13] 2025-11-24 00:12:15,048 | INFO     | PanDA job id: 6895351010
[2025-11-23 19:13:13] 2025-11-24 00:12:15,048 | INFO     | task id: 47556137
[2025-11-23 19:13:13] 2025-11-24 00:12:15,048 | INFO     | errors: (none)
[2025-11-23 19:13:13] 2025-11-24 00:12:15,048 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 19:13:13] 2025-11-24 00:12:15,048 | INFO     | pilot state: finished 
[2025-11-23 19:13:13] 2025-11-24 00:12:15,048 | INFO     | transexitcode: 0
[2025-11-23 19:13:13] 2025-11-24 00:12:15,048 | INFO     | exeerrorcode: 0
[2025-11-23 19:13:13] 2025-11-24 00:12:15,048 | INFO     | exeerrordiag: 
[2025-11-23 19:13:13] 2025-11-24 00:12:15,049 | INFO     | exitcode: 0
[2025-11-23 19:13:13] 2025-11-24 00:12:15,049 | INFO     | exitmsg: OK
[2025-11-23 19:13:13] 2025-11-24 00:12:15,049 | INFO     | cpuconsumptiontime: 163629 s
[2025-11-23 19:13:13] 2025-11-24 00:12:15,049 | INFO     | nevents: 1000
[2025-11-23 19:13:13] 2025-11-24 00:12:15,049 | INFO     | neventsw: 0
[2025-11-23 19:13:13] 2025-11-24 00:12:15,049 | INFO     | pid: 101939
[2025-11-23 19:13:13] 2025-11-24 00:12:15,049 | INFO     | pgrp: 101939
[2025-11-23 19:13:13] 2025-11-24 00:12:15,049 | INFO     | corecount: 12
[2025-11-23 19:13:13] 2025-11-24 00:12:15,050 | INFO     | event service: False
[2025-11-23 19:13:13] 2025-11-24 00:12:15,050 | INFO     | sizes: {0: 2298534, 1: 2298733, 3: 2298995, 11: 2299023, 14046: 2330699, 14050: 2339721, 14052: 2339905, 14057: 2340151}
[2025-11-23 19:13:13] 2025-11-24 00:12:15,050 | INFO     | --------------------------------------------------
[2025-11-23 19:13:13] 2025-11-24 00:12:15,050 | INFO     | 
[2025-11-23 19:13:13] 2025-11-24 00:12:15,050 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-11-23 19:13:13] 2025-11-24 00:12:15,070 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 19:13:13] 2025-11-24 00:12:15,070 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 19:13:13] 2025-11-24 00:12:15,070 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 19:13:13] 2025-11-24 00:12:15,070 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 19:13:13] 2025-11-24 00:12:15,070 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 19:13:13] 2025-11-24 00:12:15,070 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 19:13:13] 2025-11-24 00:12:15,070 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 19:13:13] 2025-11-24 00:12:15,070 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 19:13:13] 2025-11-24 00:12:15,070 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 19:13:13] 2025-11-24 00:12:15,070 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 19:13:13] 2025-11-24 00:12:15,070 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 19:13:13] 2025-11-24 00:12:15,071 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 19:13:13] 2025-11-24 00:12:15,071 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 19:13:13] 2025-11-24 00:12:15,071 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 19:13:13] 2025-11-24 00:12:15,071 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 19:13:13] 2025-11-24 00:12:15,071 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 19:13:13] 2025-11-24 00:12:15,071 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 19:13:13] 2025-11-24 00:12:15,071 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 19:13:13] 2025-11-24 00:12:15,071 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 19:13:13] 2025-11-24 00:12:15,071 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 19:13:13] 2025-11-24 00:12:15,071 | INFO     | job 6895351010 has completed (purged errors)
[2025-11-23 19:13:13] 2025-11-24 00:12:15,071 | INFO     | overall cleanup function is called
[2025-11-23 19:13:13] 2025-11-24 00:12:16,081 | INFO     | --- collectZombieJob: --- 10, [101939]
[2025-11-23 19:13:13] 2025-11-24 00:12:16,081 | INFO     | zombie collector waiting for pid 101939
[2025-11-23 19:13:13] 2025-11-24 00:12:16,081 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 19:13:13] 2025-11-24 00:12:16,082 | INFO     | collected zombie processes
[2025-11-23 19:13:13] 2025-11-24 00:12:16,082 | INFO     | will attempt to kill all subprocesses of pid=101939
[2025-11-23 19:13:13] 2025-11-24 00:12:16,249 | INFO     | process IDs to be killed: [101939] (in reverse order)
[2025-11-23 19:13:13] 2025-11-24 00:12:16,295 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 19:13:13] 2025-11-24 00:12:16,295 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 19:13:13] 2025-11-24 00:12:16,300 | INFO     | did not find any defunct processes belonging to 101939
[2025-11-23 19:13:13] 2025-11-24 00:12:16,303 | INFO     | did not find any defunct processes belonging to 101939
[2025-11-23 19:13:13] 2025-11-24 00:12:16,304 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 19:13:13] 2025-11-24 00:12:16,304 | INFO     | ready for new job
[2025-11-23 19:13:13] 2025-11-24 00:12:16,304 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 19:13:13] 2025-11-24 00:12:16,306 | INFO     | ***************************************
[2025-11-23 19:13:13] 2025-11-24 00:12:16,306 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 19:13:13] 2025-11-24 00:12:16,306 | INFO     | ***************************************
[2025-11-23 19:13:13] 2025-11-24 00:12:16,307 | INFO     | 
[2025-11-23 19:13:13] 2025-11-24 00:12:16,308 | INFO     | architecture information:
[2025-11-23 19:13:13] 2025-11-24 00:12:16,308 | INFO     | executing command: cat /etc/os-release
[2025-11-23 19:13:13] 2025-11-24 00:12:16,320 | INFO     | cat /etc/os-release:
[2025-11-23 19:13:13] NAME="CentOS Linux"
[2025-11-23 19:13:13] VERSION="7 (Core)"
[2025-11-23 19:13:13] ID="centos"
[2025-11-23 19:13:13] ID_LIKE="rhel fedora"
[2025-11-23 19:13:13] VERSION_ID="7"
[2025-11-23 19:13:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 19:13:13] ANSI_COLOR="0;31"
[2025-11-23 19:13:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 19:13:13] HOME_URL="https://www.centos.org/"
[2025-11-23 19:13:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 19:13:13] 
[2025-11-23 19:13:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 19:13:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 19:13:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 19:13:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 19:13:13] 
[2025-11-23 19:13:13] 2025-11-24 00:12:16,320 | INFO     | ***************************************
[2025-11-23 19:13:13] 2025-11-24 00:12:16,823 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-11-23 19:13:13] 2025-11-24 00:12:16,835 | INFO     | sufficient remaining disk space (341866184704 B)
[2025-11-23 19:13:13] 2025-11-24 00:12:16,835 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 19:13:13] 2025-11-24 00:12:16,835 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 19:13:13] 2025-11-24 00:12:16,836 | INFO     | update_server=False
[2025-11-23 19:13:13] 2025-11-24 00:12:16,836 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 19:13:13] 2025-11-24 00:12:16,836 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 19:13:13] 2025-11-24 00:12:16,836 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 19:13:13] 2025-11-24 00:12:17,165 | INFO     | all payload control threads have been joined
[2025-11-23 19:13:13] 2025-11-24 00:12:17,301 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-23 19:13:13] 2025-11-24 00:12:17,302 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-23 19:13:13] 2025-11-24 00:12:17,302 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 19:13:13] 2025-11-24 00:12:17,302 | INFO     | will abort loop
[2025-11-23 19:13:13] 2025-11-24 00:12:17,759 | INFO     | all data control threads have been joined
[2025-11-23 19:13:13] 2025-11-24 00:12:17,841 | INFO     | [job] queue monitor thread has finished
[2025-11-23 19:13:13] 2025-11-24 00:12:17,841 | INFO     | [job] retrieve thread has finished
[2025-11-23 19:13:13] 2025-11-24 00:12:18,171 | INFO     | [payload] control thread has finished
[2025-11-23 19:13:13] 2025-11-24 00:12:18,177 | INFO     | [payload] validate_post thread has finished
[2025-11-23 19:13:13] 2025-11-24 00:12:18,287 | INFO     | all job control threads have been joined
[2025-11-23 19:13:13] 2025-11-24 00:12:18,307 | INFO     | [job] job monitor thread has finished
[2025-11-23 19:13:13] 2025-11-24 00:12:18,500 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 19:13:13] 2025-11-24 00:12:18,500 | INFO     | [job] validate thread has finished
[2025-11-23 19:13:13] 2025-11-24 00:12:18,604 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 19:13:13] 2025-11-24 00:12:18,765 | INFO     | [data] control thread has finished
[2025-11-23 19:13:13] 2025-11-24 00:12:18,788 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 19:13:13] 2025-11-24 00:12:18,842 | INFO     | [data] copytool_out thread has finished
[2025-11-23 19:13:13] 2025-11-24 00:12:18,878 | INFO     | [data] copytool_in thread has finished
[2025-11-23 19:13:13] 2025-11-24 00:12:19,032 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 19:13:13] 2025-11-24 00:12:19,293 | INFO     | [job] control thread has finished
[2025-11-23 19:13:13] 2025-11-24 00:12:19,318 | INFO     | [payload] failed_post thread has finished
[2025-11-23 19:13:13] 2025-11-24 00:12:20,303 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 19:13:13] 2025-11-24 00:12:24,309 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 19:13:13] 2025-11-24 00:12:47,728 | INFO     | PID=94844 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-23 19:13:13] 2025-11-24 00:12:47,729 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 19:13:13] 2025-11-24 00:12:47,729 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 19:13:13] 2025-11-24 00:12:47,729 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 19:13:13] 2025-11-24 00:13:05,816 | INFO     | [monitor] cgroup control has ended
[2025-11-23 19:13:13] 2025-11-24 00:13:07,807 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140497497057088)>', '<ExcThread(monitor, started 140496953399040)>']
[2025-11-23 19:13:13] 2025-11-24 00:13:07,827 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 19:13:13] 2025-11-24 00:13:07,827 | INFO     | [monitor] control thread has ended
[2025-11-23 19:13:13] 2025-11-24 00:13:12,832 | INFO     | all workflow threads have been joined
[2025-11-23 19:13:13] 2025-11-24 00:13:12,832 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 19:13:13] 2025-11-24 00:13:12,832 | INFO     | traces error code: 0
[2025-11-23 19:13:13] 2025-11-24 00:13:12,832 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 19:13:13] 2025-11-24 00:13:12,947 [wrapper] ==== pilot stdout END ====
[2025-11-23 19:13:13] 2025-11-24 00:13:12,949 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 19:13:13] 2025-11-24 00:13:12,950 [wrapper] pilotpid: 94844
[2025-11-23 19:13:13] 2025-11-24 00:13:12,952 [wrapper] Pilot exit status: 0
[2025-11-23 19:13:13] 2025-11-24 00:13:12,959 [wrapper] pandaids: 6895351010
[2025-11-23 19:13:13] 2025-11-24 00:13:12,989 [wrapper] cleanup supervisor_pilot  408925 94845
[2025-11-23 19:13:13] 2025-11-24 00:13:12,990 [wrapper] Test setup, not cleaning
[2025-11-23 19:13:13] 2025-11-24 00:13:12,992 [wrapper] apfmon messages muted
[2025-11-23 19:13:13] 2025-11-24 00:13:12,993 [wrapper] ==== wrapper stdout END ====
[2025-11-23 19:13:13] 2025-11-24 00:13:12,995 [wrapper] ==== wrapper stderr END ====
[2025-11-23 19:13:13]  *** Error codes and diagnostics ***
[2025-11-23 19:13:13]     "exeErrorCode": 0,
[2025-11-23 19:13:13]     "exeErrorDiag": "",
[2025-11-23 19:13:13]     "pilotErrorCode": 0,
[2025-11-23 19:13:13]     "pilotErrorDiag": "",
[2025-11-23 19:13:13]  *** Listing of results directory ***
[2025-11-23 19:13:13] total 1313416
[2025-11-23 19:13:13] -rw-r--r-- 1 boinc boinc    576529 Nov 22 17:51 pilot3.tar.gz
[2025-11-23 19:13:13] -rwx------ 1 boinc boinc     36292 Nov 22 17:54 runpilot2-wrapper.sh
[2025-11-23 19:13:13] -rw-r--r-- 1 boinc boinc      5112 Nov 22 17:54 queuedata.json
[2025-11-23 19:13:13] -rw-r--r-- 1 boinc boinc       100 Nov 23 15:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 19:13:13] -rwxr-xr-x 1 boinc boinc      7986 Nov 23 15:17 run_atlas
[2025-11-23 19:13:13] -rw-r--r-- 1 boinc boinc       105 Nov 23 15:17 job.xml
[2025-11-23 19:13:13] -rw-r--r-- 2 boinc boinc 409351747 Nov 23 15:17 EVNT.47483658._000533.pool.root.1
[2025-11-23 19:13:13] -rw-r--r-- 2 boinc boinc    590105 Nov 23 15:17 input.tar.gz
[2025-11-23 19:13:13] -rw-r--r-- 2 boinc boinc     15847 Nov 23 15:17 start_atlas.sh
[2025-11-23 19:13:13] drwxrwx--x 1 boinc boinc        76 Nov 23 15:17 shared
[2025-11-23 19:13:13] -rw-r--r-- 1 boinc boinc         0 Nov 23 15:17 boinc_setup_complete
[2025-11-23 19:13:13] -rw-r--r-- 1 boinc boinc      9256 Nov 23 15:17 init_data.xml
[2025-11-23 19:13:13] -rw-r--r-- 1 boinc boinc         0 Nov 23 15:17 boinc_lockfile
[2025-11-23 19:13:13] -rw-r--r-- 1 boinc boinc      2784 Nov 23 15:17 pandaJob.out
[2025-11-23 19:13:13] -rw------- 1 boinc boinc    989786 Nov 23 15:17 agis_schedconf.cvmfs.json
[2025-11-23 19:13:13] drwx------ 1 boinc boinc       414 Nov 23 15:17 pilot3
[2025-11-23 19:13:13] -rw-r--r-- 1 boinc boinc       532 Nov 23 19:05 boinc_task_state.xml
[2025-11-23 19:13:13] -rw------- 1 boinc boinc 923691775 Nov 23 19:11 HITS.47556137._005287.pool.root.1
[2025-11-23 19:13:13] -rw------- 1 boinc boinc      1051 Nov 23 19:12 memory_monitor_summary.json
[2025-11-23 19:13:13] -rw------- 1 boinc boinc   1526164 Nov 23 19:12 agis_ddmendpoints.agis.ALL.json
[2025-11-23 19:13:13] -rw------- 1 boinc boinc   2020675 Nov 23 19:12 log.47556137._005287.job.log.tgz.1
[2025-11-23 19:13:13] -rw------- 1 boinc boinc      8638 Nov 23 19:12 heartbeat.json
[2025-11-23 19:13:13] -rw-r--r-- 1 boinc boinc      8192 Nov 23 19:12 boinc_mmap_file
[2025-11-23 19:13:13] -rw-r--r-- 1 boinc boinc        29 Nov 23 19:12 wrapper_checkpoint.txt
[2025-11-23 19:13:13] -rw------- 1 boinc boinc        95 Nov 23 19:12 pilot_heartbeat.json
[2025-11-23 19:13:13] -rw------- 1 boinc boinc      4933 Nov 23 19:13 pilotlog.txt
[2025-11-23 19:13:13] -rw------- 1 boinc boinc   1973649 Nov 23 19:13 log.47556137._005287.job.log.1
[2025-11-23 19:13:13] -rw------- 1 boinc boinc       353 Nov 23 19:13 output.list
[2025-11-23 19:13:13] -rw-r--r-- 1 boinc boinc       620 Nov 23 19:13 runtime_log
[2025-11-23 19:13:13] -rw------- 1 boinc boinc   4014080 Nov 23 19:13 result.tar.gz
[2025-11-23 19:13:13] -rw-r--r-- 1 boinc boinc      8905 Nov 23 19:13 runtime_log.err
[2025-11-23 19:13:13] -rw------- 1 boinc boinc       679 Nov 23 19:13 JO1NDmDgBh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmpLIKDm8MDoqn.diag
[2025-11-23 19:13:13] -rw-r--r-- 1 boinc boinc     21622 Nov 23 19:13 stderr.txt
[2025-11-23 19:13:13] HITS file was successfully produced:
[2025-11-23 19:13:13] -rw------- 1 boinc boinc 923691775 Nov 23 19:11 shared/HITS.pool.root.1
[2025-11-23 19:13:13]  *** Contents of shared directory: ***
[2025-11-23 19:13:13] total 1306320
[2025-11-23 19:13:13] -rw-r--r-- 2 boinc boinc 409351747 Nov 23 15:17 ATLAS.root_0
[2025-11-23 19:13:13] -rw-r--r-- 2 boinc boinc    590105 Nov 23 15:17 input.tar.gz
[2025-11-23 19:13:13] -rw-r--r-- 2 boinc boinc     15847 Nov 23 15:17 start_atlas.sh
[2025-11-23 19:13:13] -rw------- 1 boinc boinc 923691775 Nov 23 19:11 HITS.pool.root.1
[2025-11-23 19:13:13] -rw------- 1 boinc boinc   4014080 Nov 23 19:13 result.tar.gz
19:13:14 (90068): run_atlas exited; CPU time 163735.412503
19:13:14 (90068): called boinc_finish(0)

</stderr_txt>
]]>

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