Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
14:10:42 (2791): wrapper (7.7.26015): starting
14:10:42 (2791): wrapper: running run_atlas (--nthreads 12)
[2025-11-23 14:10:42] Arguments: --nthreads 12
[2025-11-23 14:10:42] Threads: 12
[2025-11-23 14:10:42] Checking for CVMFS
[2025-11-23 14:10:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 14:10:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 14:10:43] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 14:10:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 14:10:43] 2.11.2.0 2998 283718 93536 153218 1 1 13049171 20275200 1 130560 1 127856538 99.967 16765481 14444 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 14:10:43] CVMFS is ok
[2025-11-23 14:10:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 14:10:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 14:10:43] Further information can be found at the LHC@home message board.
[2025-11-23 14:10:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 14:10:43] Checking for apptainer binary...
[2025-11-23 14:10:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 14:10:43] Running /usr/bin/apptainer --version
[2025-11-23 14:10:43] apptainer version 1.3.2-1.el7
[2025-11-23 14:10:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 14:10:44] c-205-25.aglt2.org
[2025-11-23 14:10:44] apptainer works
[2025-11-23 14:10:44] Set ATHENA_PROC_NUMBER=12
[2025-11-23 14:10:44] Set ATHENA_CORE_NUMBER=12
[2025-11-23 14:10:44] Starting ATLAS job with PandaID=6895339530
[2025-11-23 14:10:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 21:24:48]  *** The last 200 lines of the pilot log: ***
[2025-11-23 21:24:48] 2025-11-24 02:24:13,022 | INFO     | time since job start (25994s) is within the limit (172800.0s)
[2025-11-23 21:24:48] 2025-11-24 02:24:15,027 | INFO     | time since job start (25996s) is within the limit (172800.0s)
[2025-11-23 21:24:48] 2025-11-24 02:24:15,050 | INFO     | monitor loop #1947: job 0:6895339530 is in state 'finished'
[2025-11-23 21:24:48] 2025-11-24 02:24:15,050 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 21:24:48] 2025-11-24 02:24:15,820 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-23 21:24:48] 2025-11-24 02:24:15,824 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2025-11-23 21:24:48] 2025-11-24 02:24:15,826 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895339530/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 21:24:48] 2025-11-24 02:24:15,826 | INFO     | extracted standard info from prmon json
[2025-11-23 21:24:48] 2025-11-24 02:24:15,826 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 21:24:48] 2025-11-24 02:24:15,827 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 21:24:48] 2025-11-24 02:24:15,833 | INFO     | fitting pss+swap vs Time
[2025-11-23 21:24:48] 2025-11-24 02:24:15,834 | INFO     | sum of square deviations: 23972333012.077526
[2025-11-23 21:24:48] 2025-11-24 02:24:15,838 | INFO     | sum of deviations: 378732385320.50726
[2025-11-23 21:24:48] 2025-11-24 02:24:15,838 | INFO     | mean x: 1763938051.7394366
[2025-11-23 21:24:48] 2025-11-24 02:24:15,838 | INFO     | mean y: 3419570.1126760566
[2025-11-23 21:24:48] 2025-11-24 02:24:15,838 | INFO     | intersect: -27864559135.01832
[2025-11-23 21:24:48] 2025-11-24 02:24:15,839 | INFO     | chi2: 6.457155949858514
[2025-11-23 21:24:48] 2025-11-24 02:24:15,839 | INFO     | sum of square deviations: 23138143829.287464
[2025-11-23 21:24:48] 2025-11-24 02:24:15,843 | INFO     | sum of deviations: 556827335052.596
[2025-11-23 21:24:48] 2025-11-24 02:24:15,843 | INFO     | mean x: 1763937899.2422802
[2025-11-23 21:24:48] 2025-11-24 02:24:15,843 | INFO     | mean y: 3452099.3372921613
[2025-11-23 21:24:48] 2025-11-24 02:24:15,844 | INFO     | intersect: -42446315992.69554
[2025-11-23 21:24:48] 2025-11-24 02:24:15,844 | INFO     | chi2: 2.8850510394855076
[2025-11-23 21:24:48] 2025-11-24 02:24:15,844 | INFO     | current chi2=2.8850510394855076 (change=55.32009662011147 %)
[2025-11-23 21:24:48] 2025-11-24 02:24:15,845 | INFO     | sum of square deviations: 22323510971.47831
[2025-11-23 21:24:48] 2025-11-24 02:24:15,848 | INFO     | sum of deviations: 599307576024.0403
[2025-11-23 21:24:48] 2025-11-24 02:24:15,848 | INFO     | mean x: 1763937746.7427886
[2025-11-23 21:24:48] 2025-11-24 02:24:15,849 | INFO     | mean y: 3459997.4302884615
[2025-11-23 21:24:48] 2025-11-24 02:24:15,849 | INFO     | intersect: -47352050370.46781
[2025-11-23 21:24:48] 2025-11-24 02:24:15,849 | INFO     | chi2: 2.387780194192773
[2025-11-23 21:24:48] 2025-11-24 02:24:15,849 | INFO     | current chi2=2.387780194192773 (change=17.23611951701946 %)
[2025-11-23 21:24:48] 2025-11-24 02:24:15,849 | INFO     | right removable region: 415
[2025-11-23 21:24:48] 2025-11-24 02:24:15,850 | INFO     | sum of square deviations: 23138081609.287468
[2025-11-23 21:24:48] 2025-11-24 02:24:15,854 | INFO     | sum of deviations: 248015434318.4487
[2025-11-23 21:24:48] 2025-11-24 02:24:15,854 | INFO     | mean x: 1763938204.2422802
[2025-11-23 21:24:48] 2025-11-24 02:24:15,854 | INFO     | mean y: 3443379.9073634204
[2025-11-23 21:24:48] 2025-11-24 02:24:15,854 | INFO     | intersect: -18904083493.904446
[2025-11-23 21:24:48] 2025-11-24 02:24:15,854 | INFO     | chi2: 4.303802999205327
[2025-11-23 21:24:48] 2025-11-24 02:24:15,855 | INFO     | current chi2=4.303802999205327 (change=33.34831878577085 %)
[2025-11-23 21:24:48] 2025-11-24 02:24:15,855 | INFO     | sum of square deviations: 22323437649.478313
[2025-11-23 21:24:48] 2025-11-24 02:24:15,859 | INFO     | sum of deviations: 207785007446.95453
[2025-11-23 21:24:48] 2025-11-24 02:24:15,859 | INFO     | mean x: 1763938356.7427886
[2025-11-23 21:24:48] 2025-11-24 02:24:15,859 | INFO     | mean y: 3450903.4014423075
[2025-11-23 21:24:48] 2025-11-24 02:24:15,859 | INFO     | intersect: -16415164828.94453
[2025-11-23 21:24:48] 2025-11-24 02:24:15,860 | INFO     | chi2: 4.212003486406742
[2025-11-23 21:24:48] 2025-11-24 02:24:15,860 | INFO     | current chi2=4.212003486406742 (change=2.13298593861139 %)
[2025-11-23 21:24:48] 2025-11-24 02:24:15,860 | INFO     | left removable region: 20
[2025-11-23 21:24:48] 2025-11-24 02:24:15,860 | INFO     | sum of square deviations: 19110523177.686
[2025-11-23 21:24:48] 2025-11-24 02:24:15,864 | INFO     | sum of deviations: 368821976156.3137
[2025-11-23 21:24:48] 2025-11-24 02:24:15,864 | INFO     | mean x: 1763938326.2481012
[2025-11-23 21:24:48] 2025-11-24 02:24:15,864 | INFO     | mean y: 3504093.7518987344
[2025-11-23 21:24:48] 2025-11-24 02:24:15,864 | INFO     | intersect: -34039479097.01287
[2025-11-23 21:24:48] 2025-11-24 02:24:15,865 | INFO     | chi2: 0.05034122280959356
[2025-11-23 21:24:48] 2025-11-24 02:24:15,865 | INFO     | current memory leak: 19.30 B/s (using 395 data points, chi2=0.05)
[2025-11-23 21:24:48] 2025-11-24 02:24:15,865 | INFO     | could have reported an average CPU frequency of 2400 MHz (18 samples)
[2025-11-23 21:24:48] 2025-11-24 02:24:15,865 | INFO     | ..............................
[2025-11-23 21:24:48] 2025-11-24 02:24:15,865 | INFO     | . Timing measurements:
[2025-11-23 21:24:48] 2025-11-24 02:24:15,865 | INFO     | . get job = 0 s
[2025-11-23 21:24:48] 2025-11-24 02:24:15,866 | INFO     | . initial setup = 2 s
[2025-11-23 21:24:48] 2025-11-24 02:24:15,866 | INFO     | . payload setup = 8 s
[2025-11-23 21:24:48] 2025-11-24 02:24:15,866 | INFO     | . stage-in = 0 s
[2025-11-23 21:24:48] 2025-11-24 02:24:15,866 | INFO     | . payload execution = 25956 s
[2025-11-23 21:24:48] 2025-11-24 02:24:15,866 | INFO     | . stage-out = 3 s
[2025-11-23 21:24:48] 2025-11-24 02:24:15,866 | INFO     | . log creation = 0 s
[2025-11-23 21:24:48] 2025-11-24 02:24:15,866 | INFO     | ..............................
[2025-11-23 21:24:48] 2025-11-24 02:24:15,951 | INFO     | 
[2025-11-23 21:24:48] 2025-11-24 02:24:15,951 | INFO     | job summary report
[2025-11-23 21:24:48] 2025-11-24 02:24:15,952 | INFO     | --------------------------------------------------
[2025-11-23 21:24:48] 2025-11-24 02:24:15,952 | INFO     | PanDA job id: 6895339530
[2025-11-23 21:24:48] 2025-11-24 02:24:15,952 | INFO     | task id: 47556137
[2025-11-23 21:24:48] 2025-11-24 02:24:15,952 | INFO     | errors: (none)
[2025-11-23 21:24:48] 2025-11-24 02:24:15,952 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 21:24:48] 2025-11-24 02:24:15,952 | INFO     | pilot state: finished 
[2025-11-23 21:24:48] 2025-11-24 02:24:15,953 | INFO     | transexitcode: 0
[2025-11-23 21:24:48] 2025-11-24 02:24:15,953 | INFO     | exeerrorcode: 0
[2025-11-23 21:24:48] 2025-11-24 02:24:15,953 | INFO     | exeerrordiag: 
[2025-11-23 21:24:48] 2025-11-24 02:24:15,953 | INFO     | exitcode: 0
[2025-11-23 21:24:48] 2025-11-24 02:24:15,953 | INFO     | exitmsg: OK
[2025-11-23 21:24:48] 2025-11-24 02:24:15,953 | INFO     | cpuconsumptiontime: 297739 s
[2025-11-23 21:24:48] 2025-11-24 02:24:15,954 | INFO     | nevents: 1000
[2025-11-23 21:24:48] 2025-11-24 02:24:15,954 | INFO     | neventsw: 0
[2025-11-23 21:24:48] 2025-11-24 02:24:15,954 | INFO     | pid: 13055
[2025-11-23 21:24:48] 2025-11-24 02:24:15,954 | INFO     | pgrp: 13055
[2025-11-23 21:24:48] 2025-11-24 02:24:15,954 | INFO     | corecount: 12
[2025-11-23 21:24:48] 2025-11-24 02:24:15,954 | INFO     | event service: False
[2025-11-23 21:24:48] 2025-11-24 02:24:15,954 | INFO     | sizes: {0: 2298641, 1: 2298783, 5: 2299045, 11: 2299101, 25968: 2336422, 25973: 2345416, 25975: 2345600, 25980: 2345846}
[2025-11-23 21:24:48] 2025-11-24 02:24:15,954 | INFO     | --------------------------------------------------
[2025-11-23 21:24:48] 2025-11-24 02:24:15,954 | INFO     | 
[2025-11-23 21:24:48] 2025-11-24 02:24:15,955 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-23 21:24:48] 2025-11-24 02:24:15,978 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 21:24:48] 2025-11-24 02:24:15,979 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 21:24:48] 2025-11-24 02:24:15,979 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 21:24:48] 2025-11-24 02:24:15,979 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 21:24:48] 2025-11-24 02:24:15,979 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 21:24:48] 2025-11-24 02:24:15,979 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 21:24:48] 2025-11-24 02:24:15,980 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 21:24:48] 2025-11-24 02:24:15,980 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 21:24:48] 2025-11-24 02:24:15,980 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 21:24:48] 2025-11-24 02:24:15,980 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 21:24:48] 2025-11-24 02:24:15,980 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 21:24:48] 2025-11-24 02:24:15,980 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 21:24:48] 2025-11-24 02:24:15,981 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 21:24:48] 2025-11-24 02:24:15,981 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 21:24:48] 2025-11-24 02:24:15,981 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 21:24:48] 2025-11-24 02:24:15,981 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 21:24:48] 2025-11-24 02:24:15,981 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 21:24:48] 2025-11-24 02:24:15,981 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 21:24:48] 2025-11-24 02:24:15,982 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 21:24:48] 2025-11-24 02:24:15,982 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 21:24:48] 2025-11-24 02:24:15,982 | INFO     | job 6895339530 has completed (purged errors)
[2025-11-23 21:24:48] 2025-11-24 02:24:15,982 | INFO     | overall cleanup function is called
[2025-11-23 21:24:48] 2025-11-24 02:24:16,999 | INFO     | --- collectZombieJob: --- 10, [13055]
[2025-11-23 21:24:48] 2025-11-24 02:24:16,999 | INFO     | zombie collector waiting for pid 13055
[2025-11-23 21:24:48] 2025-11-24 02:24:16,999 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 21:24:48] 2025-11-24 02:24:16,999 | INFO     | collected zombie processes
[2025-11-23 21:24:48] 2025-11-24 02:24:16,999 | INFO     | will attempt to kill all subprocesses of pid=13055
[2025-11-23 21:24:48] 2025-11-24 02:24:17,091 | INFO     | process IDs to be killed: [13055] (in reverse order)
[2025-11-23 21:24:48] 2025-11-24 02:24:17,142 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 21:24:48] 2025-11-24 02:24:17,142 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 21:24:48] 2025-11-24 02:24:17,145 | INFO     | did not find any defunct processes belonging to 13055
[2025-11-23 21:24:48] 2025-11-24 02:24:17,147 | INFO     | did not find any defunct processes belonging to 13055
[2025-11-23 21:24:48] 2025-11-24 02:24:17,149 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 21:24:48] 2025-11-24 02:24:17,149 | INFO     | ready for new job
[2025-11-23 21:24:48] 2025-11-24 02:24:17,150 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 21:24:48] 2025-11-24 02:24:17,152 | INFO     | ***************************************
[2025-11-23 21:24:48] 2025-11-24 02:24:17,152 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 21:24:48] 2025-11-24 02:24:17,152 | INFO     | ***************************************
[2025-11-23 21:24:48] 2025-11-24 02:24:17,152 | INFO     | 
[2025-11-23 21:24:48] 2025-11-24 02:24:17,153 | INFO     | architecture information:
[2025-11-23 21:24:48] 2025-11-24 02:24:17,153 | INFO     | executing command: cat /etc/os-release
[2025-11-23 21:24:48] 2025-11-24 02:24:17,168 | INFO     | cat /etc/os-release:
[2025-11-23 21:24:48] NAME="CentOS Linux"
[2025-11-23 21:24:48] VERSION="7 (Core)"
[2025-11-23 21:24:48] ID="centos"
[2025-11-23 21:24:48] ID_LIKE="rhel fedora"
[2025-11-23 21:24:48] VERSION_ID="7"
[2025-11-23 21:24:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 21:24:48] ANSI_COLOR="0;31"
[2025-11-23 21:24:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 21:24:48] HOME_URL="https://www.centos.org/"
[2025-11-23 21:24:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 21:24:48] 
[2025-11-23 21:24:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 21:24:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 21:24:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 21:24:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 21:24:48] 
[2025-11-23 21:24:48] 2025-11-24 02:24:17,168 | INFO     | ***************************************
[2025-11-23 21:24:48] 2025-11-24 02:24:17,671 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-23 21:24:48] 2025-11-24 02:24:17,688 | INFO     | sufficient remaining disk space (28257026048 B)
[2025-11-23 21:24:48] 2025-11-24 02:24:17,689 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 21:24:48] 2025-11-24 02:24:17,689 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 21:24:48] 2025-11-24 02:24:17,689 | INFO     | update_server=False
[2025-11-23 21:24:48] 2025-11-24 02:24:17,689 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 21:24:48] 2025-11-24 02:24:17,690 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 21:24:48] 2025-11-24 02:24:17,690 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 21:24:48] 2025-11-24 02:24:18,016 | INFO     | all job control threads have been joined
[2025-11-23 21:24:48] 2025-11-24 02:24:18,077 | INFO     | all data control threads have been joined
[2025-11-23 21:24:48] 2025-11-24 02:24:18,559 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 21:24:48] 2025-11-24 02:24:18,559 | INFO     | aborting loop
[2025-11-23 21:24:48] 2025-11-24 02:24:18,695 | INFO     | [job] retrieve thread has finished
[2025-11-23 21:24:48] 2025-11-24 02:24:18,696 | INFO     | [job] queue monitor thread has finished
[2025-11-23 21:24:48] 2025-11-24 02:24:19,028 | INFO     | [job] control thread has finished
[2025-11-23 21:24:48] 2025-11-24 02:24:19,082 | INFO     | [data] control thread has finished
[2025-11-23 21:24:48] 2025-11-24 02:24:19,095 | INFO     | all payload control threads have been joined
[2025-11-23 21:24:48] 2025-11-24 02:24:19,106 | INFO     | [job] validate thread has finished
[2025-11-23 21:24:48] 2025-11-24 02:24:19,115 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 21:24:48] 2025-11-24 02:24:19,162 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 21:24:48] 2025-11-24 02:24:19,221 | INFO     | [payload] validate_post thread has finished
[2025-11-23 21:24:48] 2025-11-24 02:24:19,564 | INFO     | [job] job monitor thread has finished
[2025-11-23 21:24:48] 2025-11-24 02:24:19,622 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 21:24:48] 2025-11-24 02:24:19,722 | INFO     | [data] copytool_in thread has finished
[2025-11-23 21:24:48] 2025-11-24 02:24:19,756 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 21:24:48] 2025-11-24 02:24:20,039 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 21:24:48] 2025-11-24 02:24:20,101 | INFO     | [payload] control thread has finished
[2025-11-23 21:24:48] 2025-11-24 02:24:20,201 | INFO     | [payload] failed_post thread has finished
[2025-11-23 21:24:48] 2025-11-24 02:24:21,170 | INFO     | [data] copytool_out thread has finished
[2025-11-23 21:24:48] 2025-11-24 02:24:21,696 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 21:24:48] 2025-11-24 02:24:41,576 | INFO     | [monitor] cgroup control has ended
[2025-11-23 21:24:48] 2025-11-24 02:24:41,686 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139691957622592)>', '<ExcThread(monitor, started 139690824939264)>']
[2025-11-23 21:24:48] 2025-11-24 02:24:46,711 | INFO     | all workflow threads have been joined
[2025-11-23 21:24:48] 2025-11-24 02:24:46,711 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 21:24:48] 2025-11-24 02:24:46,712 | INFO     | traces error code: 0
[2025-11-23 21:24:48] 2025-11-24 02:24:46,712 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 21:24:48] 2025-11-24 02:24:48,229 | INFO     | PID=6514 has CPU usage=5.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-23 21:24:48] 2025-11-24 02:24:48,230 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 21:24:48] 2025-11-24 02:24:48,230 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 21:24:48] 2025-11-24 02:24:48,230 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 21:24:48] 2025-11-24 02:24:48,230 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 21:24:48] 2025-11-24 02:24:48,230 | INFO     | [monitor] control thread has ended
[2025-11-23 21:24:48] 2025-11-24 02:24:48,336 [wrapper] ==== pilot stdout END ====
[2025-11-23 21:24:48] 2025-11-24 02:24:48,340 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 21:24:48] 2025-11-24 02:24:48,344 [wrapper] pilotpid: 6514
[2025-11-23 21:24:48] 2025-11-24 02:24:48,348 [wrapper] Pilot exit status: 0
[2025-11-23 21:24:48] 2025-11-24 02:24:48,361 [wrapper] pandaids: 6895339530
[2025-11-23 21:24:48] 2025-11-24 02:24:48,402 [wrapper] cleanup supervisor_pilot 14032 6515
[2025-11-23 21:24:48] 2025-11-24 02:24:48,405 [wrapper] Test setup, not cleaning
[2025-11-23 21:24:48] 2025-11-24 02:24:48,409 [wrapper] apfmon messages muted
[2025-11-23 21:24:48] 2025-11-24 02:24:48,413 [wrapper] ==== wrapper stdout END ====
[2025-11-23 21:24:48] 2025-11-24 02:24:48,416 [wrapper] ==== wrapper stderr END ====
[2025-11-23 21:24:48]  *** Error codes and diagnostics ***
[2025-11-23 21:24:48]     "exeErrorCode": 0,
[2025-11-23 21:24:48]     "exeErrorDiag": "",
[2025-11-23 21:24:48]     "pilotErrorCode": 0,
[2025-11-23 21:24:48]     "pilotErrorDiag": "",
[2025-11-23 21:24:48]  *** Listing of results directory ***
[2025-11-23 21:24:48] total 1306740
[2025-11-23 21:24:48] -rw-r--r-- 1 boincer umatlas    576529 Nov 22 05:20 pilot3.tar.gz
[2025-11-23 21:24:48] -rw-r--r-- 1 boincer umatlas      5112 Nov 22 05:33 queuedata.json
[2025-11-23 21:24:48] -rwx------ 1 boincer umatlas     36292 Nov 22 05:34 runpilot2-wrapper.sh
[2025-11-23 21:24:48] -rw-r--r-- 1 boincer umatlas       100 Nov 23 14:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 21:24:48] -rwxr-xr-x 1 boincer umatlas      7986 Nov 23 14:10 run_atlas
[2025-11-23 21:24:48] -rw-r--r-- 1 boincer umatlas       105 Nov 23 14:10 job.xml
[2025-11-23 21:24:48] -rw-r--r-- 2 boincer umatlas 407187562 Nov 23 14:10 EVNT.47483658._000351.pool.root.1
[2025-11-23 21:24:48] -rw-r--r-- 2 boincer umatlas    590098 Nov 23 14:10 input.tar.gz
[2025-11-23 21:24:48] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 14:10 start_atlas.sh
[2025-11-23 21:24:48] drwxrwx--x 2 boincer umatlas      4096 Nov 23 14:10 shared
[2025-11-23 21:24:48] -rw-r--r-- 1 boincer umatlas         0 Nov 23 14:10 boinc_lockfile
[2025-11-23 21:24:48] -rw-r--r-- 1 boincer umatlas      2784 Nov 23 14:10 pandaJob.out
[2025-11-23 21:24:48] -rw------- 1 boincer umatlas        57 Nov 23 14:10 setup.sh.local
[2025-11-23 21:24:48] -rw------- 1 boincer umatlas    989786 Nov 23 14:10 agis_schedconf.cvmfs.json
[2025-11-23 21:24:48] drwx------ 5 boincer umatlas      4096 Nov 23 14:11 pilot3
[2025-11-23 21:24:48] -rw-r--r-- 1 boincer umatlas       532 Nov 23 21:15 boinc_task_state.xml
[2025-11-23 21:24:48] -rw-r--r-- 1 boincer umatlas      5956 Nov 23 21:22 init_data.xml
[2025-11-23 21:24:48] -rw------- 1 boincer umatlas 915330918 Nov 23 21:23 HITS.47556137._003479.pool.root.1
[2025-11-23 21:24:48] -rw------- 1 boincer umatlas      1062 Nov 23 21:24 memory_monitor_summary.json
[2025-11-23 21:24:48] -rw------- 1 boincer umatlas   1526164 Nov 23 21:24 agis_ddmendpoints.agis.ALL.json
[2025-11-23 21:24:48] -rw------- 1 boincer umatlas   2179528 Nov 23 21:24 log.47556137._003479.job.log.tgz.1
[2025-11-23 21:24:48] -rw------- 1 boincer umatlas        95 Nov 23 21:24 pilot_heartbeat.json
[2025-11-23 21:24:48] -rw------- 1 boincer umatlas      8678 Nov 23 21:24 heartbeat.json
[2025-11-23 21:24:48] -rw-r--r-- 1 boincer umatlas      8192 Nov 23 21:24 boinc_mmap_file
[2025-11-23 21:24:48] -rw-r--r-- 1 boincer umatlas        29 Nov 23 21:24 wrapper_checkpoint.txt
[2025-11-23 21:24:48] -rw------- 1 boincer umatlas       744 Nov 23 21:24 pilotlog.txt
[2025-11-23 21:24:48] -rw------- 1 boincer umatlas   3652227 Nov 23 21:24 log.47556137._003479.job.log.1
[2025-11-23 21:24:48] -rw------- 1 boincer umatlas       353 Nov 23 21:24 output.list
[2025-11-23 21:24:48] -rw-r--r-- 1 boincer umatlas       620 Nov 23 21:24 runtime_log
[2025-11-23 21:24:48] -rw------- 1 boincer umatlas   5847040 Nov 23 21:24 result.tar.gz
[2025-11-23 21:24:48] -rw-r--r-- 1 boincer umatlas      9345 Nov 23 21:24 runtime_log.err
[2025-11-23 21:24:48] -rw------- 1 boincer umatlas       670 Nov 23 21:24 GOgKDmR8zg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm27JKDmLybO1n.diag
[2025-11-23 21:24:48] -rw-r--r-- 1 boincer umatlas     21327 Nov 23 21:24 stderr.txt
[2025-11-23 21:24:48] HITS file was successfully produced:
[2025-11-23 21:24:48] -rw------- 1 boincer umatlas 915330918 Nov 23 21:23 shared/HITS.pool.root.1
[2025-11-23 21:24:48]  *** Contents of shared directory: ***
[2025-11-23 21:24:48] total 1297840
[2025-11-23 21:24:48] -rw-r--r-- 2 boincer umatlas 407187562 Nov 23 14:10 ATLAS.root_0
[2025-11-23 21:24:48] -rw-r--r-- 2 boincer umatlas    590098 Nov 23 14:10 input.tar.gz
[2025-11-23 21:24:48] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 14:10 start_atlas.sh
[2025-11-23 21:24:48] -rw------- 1 boincer umatlas 915330918 Nov 23 21:23 HITS.pool.root.1
[2025-11-23 21:24:48] -rw------- 1 boincer umatlas   5847040 Nov 23 21:24 result.tar.gz
21:24:49 (2791): run_atlas exited; CPU time 290819.011191
21:24:49 (2791): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN