Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:07 (1151090): wrapper (7.7.26015): starting
00:04:07 (1151090): wrapper: running run_atlas (--nthreads 12)
[2025-11-24 00:04:07] Arguments: --nthreads 12
[2025-11-24 00:04:07] Threads: 12
[2025-11-24 00:04:07] Checking for CVMFS
[2025-11-24 00:04:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:04:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:04:08] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:04:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:04:09] 2.13.2.0 9825 33403 399164 153233 1 465 36406066 40960000 23535 16776704 0 71887770 99.594 73927575 34741 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 00:04:09] CVMFS is ok
[2025-11-24 00:04:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 00:04:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 00:04:09] Further information can be found at the LHC@home message board.
[2025-11-24 00:04:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:04:09] Checking for apptainer binary...
[2025-11-24 00:04:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:04:09] Running /usr/bin/apptainer --version
[2025-11-24 00:04:09] apptainer version 1.4.4-1.el9
[2025-11-24 00:04:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:04:09] c-211-35-1.aglt2.org
[2025-11-24 00:04:09] apptainer works
[2025-11-24 00:04:09] Set ATHENA_PROC_NUMBER=12
[2025-11-24 00:04:09] Set ATHENA_CORE_NUMBER=12
[2025-11-24 00:04:09] Starting ATLAS job with PandaID=6895350909
[2025-11-24 00:04:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
04:11:24 (1781753): wrapper (7.7.26015): starting
04:11:24 (1781753): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 04:11:24] Arguments: --nthreads 8
[2025-11-24 04:11:24] Threads: 8
[2025-11-24 04:11:24] This job has been restarted, cleaning up previous attempt
[2025-11-24 04:11:24] Checking for CVMFS
[2025-11-24 04:11:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 04:11:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 04:11:24] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 04:11:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 04:11:25] 2.13.2.0 9825 33650 415384 153239 2 633 38374349 40960001 20045 16776704 0 72961657 99.598 74116864 34729 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 04:11:25] CVMFS is ok
[2025-11-24 04:11:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 04:11:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 04:11:25] Further information can be found at the LHC@home message board.
[2025-11-24 04:11:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 04:11:25] Checking for apptainer binary...
[2025-11-24 04:11:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 04:11:25] Running /usr/bin/apptainer --version
[2025-11-24 04:11:25] apptainer version 1.4.4-1.el9
[2025-11-24 04:11:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 04:11:25] c-211-35-1.aglt2.org
[2025-11-24 04:11:25] apptainer works
[2025-11-24 04:11:25] Set ATHENA_PROC_NUMBER=8
[2025-11-24 04:11:25] Set ATHENA_CORE_NUMBER=8
[2025-11-24 04:11:25] Starting ATLAS job with PandaID=6895350909
[2025-11-24 04:11:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 19:42:37]  *** The last 200 lines of the pilot log: ***
[2025-11-24 19:42:37] 2025-11-25 00:23:24,864 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 19:42:37] 2025-11-25 00:23:24,864 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 19:42:37] 2025-11-25 00:23:24,893 | INFO     | fitting pss+swap vs Time
[2025-11-24 19:42:37] 2025-11-25 00:23:24,894 | INFO     | sum of square deviations: 223045218756.88864
[2025-11-24 19:42:37] 2025-11-25 00:23:24,911 | INFO     | sum of deviations: 1560696017867.9863
[2025-11-24 19:42:37] 2025-11-25 00:23:24,912 | INFO     | mean x: 1764002853.2388394
[2025-11-24 19:42:37] 2025-11-25 00:23:24,912 | INFO     | mean y: 2876928.448660714
[2025-11-24 19:42:37] 2025-11-25 00:23:24,912 | INFO     | intersect: -12340235575.381218
[2025-11-24 19:42:37] 2025-11-25 00:23:24,913 | INFO     | chi2: 7.706317518853039
[2025-11-24 19:42:37] 2025-11-25 00:23:24,914 | INFO     | sum of square deviations: 219332396401.6851
[2025-11-24 19:42:37] 2025-11-25 00:23:24,931 | INFO     | sum of deviations: 1873072532503.3347
[2025-11-24 19:42:37] 2025-11-25 00:23:24,932 | INFO     | mean x: 1764002700.7485971
[2025-11-24 19:42:37] 2025-11-25 00:23:24,932 | INFO     | mean y: 2889757.0684624016
[2025-11-24 19:42:37] 2025-11-25 00:23:24,932 | INFO     | intersect: -15061483131.935875
[2025-11-24 19:42:37] 2025-11-25 00:23:24,933 | INFO     | chi2: 4.322298188404136
[2025-11-24 19:42:37] 2025-11-25 00:23:24,934 | INFO     | current chi2=4.322298188404136 (change=43.91227485981605 %)
[2025-11-24 19:42:37] 2025-11-25 00:23:24,935 | INFO     | sum of square deviations: 215661016683.81155
[2025-11-24 19:42:37] 2025-11-25 00:23:24,952 | INFO     | sum of deviations: 2042403623210.2886
[2025-11-24 19:42:37] 2025-11-25 00:23:24,952 | INFO     | mean x: 1764002548.258465
[2025-11-24 19:42:37] 2025-11-25 00:23:24,953 | INFO     | mean y: 2896781.7279909705
[2025-11-24 19:42:37] 2025-11-25 00:23:24,953 | INFO     | intersect: -16702974549.656273
[2025-11-24 19:42:37] 2025-11-25 00:23:24,954 | INFO     | chi2: 3.0408436045624074
[2025-11-24 19:42:37] 2025-11-25 00:23:24,954 | INFO     | current chi2=3.0408436045624074 (change=29.64752842086683 %)
[2025-11-24 19:42:37] 2025-11-25 00:23:24,956 | INFO     | sum of square deviations: 212030685276.3636
[2025-11-24 19:42:37] 2025-11-25 00:23:24,974 | INFO     | sum of deviations: 2040885005731.4854
[2025-11-24 19:42:37] 2025-11-25 00:23:24,974 | INFO     | mean x: 1764002395.7650397
[2025-11-24 19:42:37] 2025-11-25 00:23:24,974 | INFO     | mean y: 2896712.9443813846
[2025-11-24 19:42:37] 2025-11-25 00:23:24,974 | INFO     | intersect: -16976372277.762482
[2025-11-24 19:42:37] 2025-11-25 00:23:24,976 | INFO     | chi2: 2.9642599633453015
[2025-11-24 19:42:37] 2025-11-25 00:23:24,976 | INFO     | current chi2=2.9642599633453015 (change=2.5184998367624596 %)
[2025-11-24 19:42:37] 2025-11-25 00:23:24,976 | INFO     | right removable region: 880
[2025-11-24 19:42:37] 2025-11-25 00:23:24,977 | INFO     | sum of square deviations: 219331446021.68524
[2025-11-24 19:42:37] 2025-11-25 00:23:24,995 | INFO     | sum of deviations: 1275103787566.3394
[2025-11-24 19:42:37] 2025-11-25 00:23:24,996 | INFO     | mean x: 1764003005.7485971
[2025-11-24 19:42:37] 2025-11-25 00:23:24,996 | INFO     | mean y: 2888648.6711560045
[2025-11-24 19:42:37] 2025-11-25 00:23:24,996 | INFO     | intersect: -10252307105.092566
[2025-11-24 19:42:37] 2025-11-25 00:23:24,997 | INFO     | chi2: 5.0788454270243895
[2025-11-24 19:42:37] 2025-11-25 00:23:24,997 | INFO     | current chi2=5.0788454270243895 (change=34.09504066502189 %)
[2025-11-24 19:42:37] 2025-11-25 00:23:24,999 | INFO     | sum of square deviations: 215659550987.87457
[2025-11-24 19:42:37] 2025-11-25 00:23:25,017 | INFO     | sum of deviations: 1195086896826.6511
[2025-11-24 19:42:37] 2025-11-25 00:23:25,017 | INFO     | mean x: 1764003158.2494357
[2025-11-24 19:42:37] 2025-11-25 00:23:25,017 | INFO     | mean y: 2891971.300225734
[2025-11-24 19:42:37] 2025-11-25 00:23:25,017 | INFO     | intersect: -9772409195.413506
[2025-11-24 19:42:37] 2025-11-25 00:23:25,019 | INFO     | chi2: 4.9668928575542
[2025-11-24 19:42:37] 2025-11-25 00:23:25,019 | INFO     | current chi2=4.9668928575542 (change=2.204291724936013 %)
[2025-11-24 19:42:37] 2025-11-25 00:23:25,019 | INFO     | left removable region: 20
[2025-11-24 19:42:37] 2025-11-25 00:23:25,020 | INFO     | sum of square deviations: 197226276516.13477
[2025-11-24 19:42:37] 2025-11-25 00:23:25,037 | INFO     | sum of deviations: 1551763561362.6174
[2025-11-24 19:42:37] 2025-11-25 00:23:25,037 | INFO     | mean x: 1764002975.2767441
[2025-11-24 19:42:37] 2025-11-25 00:23:25,038 | INFO     | mean y: 2917124.8209302328
[2025-11-24 19:42:37] 2025-11-25 00:23:25,038 | INFO     | intersect: -13876143959.34327
[2025-11-24 19:42:37] 2025-11-25 00:23:25,039 | INFO     | chi2: 0.11194384349298156
[2025-11-24 19:42:37] 2025-11-25 00:23:25,039 | INFO     | current memory leak: 7.87 B/s (using 860 data points, chi2=0.11)
[2025-11-24 19:42:37] 2025-11-25 00:23:25,041 | INFO     | could have reported an average CPU frequency of 2456 MHz (33 samples)
[2025-11-24 19:42:37] 2025-11-25 00:23:25,041 | INFO     | ..............................
[2025-11-24 19:42:37] 2025-11-25 00:23:25,042 | INFO     | . Timing measurements:
[2025-11-24 19:42:37] 2025-11-25 00:23:25,042 | INFO     | . get job = 0 s
[2025-11-24 19:42:37] 2025-11-25 00:23:25,042 | INFO     | . initial setup = 2 s
[2025-11-24 19:42:37] 2025-11-25 00:23:25,042 | INFO     | . payload setup = 13 s
[2025-11-24 19:42:37] 2025-11-25 00:23:25,042 | INFO     | . stage-in = 0 s
[2025-11-24 19:42:37] 2025-11-25 00:23:25,042 | INFO     | . payload execution = 54643 s
[2025-11-24 19:42:37] 2025-11-25 00:23:25,042 | INFO     | . stage-out = 6 s
[2025-11-24 19:42:37] 2025-11-25 00:23:25,042 | INFO     | . log creation = 1 s
[2025-11-24 19:42:37] 2025-11-25 00:23:25,042 | INFO     | ..............................
[2025-11-24 19:42:37] 2025-11-25 00:23:25,581 | INFO     | 
[2025-11-24 19:42:37] 2025-11-25 00:23:25,587 | INFO     | job summary report
[2025-11-24 19:42:37] 2025-11-25 00:23:25,587 | INFO     | --------------------------------------------------
[2025-11-24 19:42:37] 2025-11-25 00:23:25,587 | INFO     | PanDA job id: 6895350909
[2025-11-24 19:42:37] 2025-11-25 00:23:25,587 | INFO     | task id: 47556137
[2025-11-24 19:42:37] 2025-11-25 00:23:25,587 | INFO     | errors: (none)
[2025-11-24 19:42:37] 2025-11-25 00:23:25,587 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 19:42:37] 2025-11-25 00:23:25,587 | INFO     | pilot state: finished 
[2025-11-24 19:42:37] 2025-11-25 00:23:25,587 | INFO     | transexitcode: 0
[2025-11-24 19:42:37] 2025-11-25 00:23:25,588 | INFO     | exeerrorcode: 0
[2025-11-24 19:42:37] 2025-11-25 00:23:25,588 | INFO     | exeerrordiag: 
[2025-11-24 19:42:37] 2025-11-25 00:23:25,588 | INFO     | exitcode: 0
[2025-11-24 19:42:37] 2025-11-25 00:23:25,588 | INFO     | exitmsg: OK
[2025-11-24 19:42:37] 2025-11-25 00:23:25,588 | INFO     | cpuconsumptiontime: 286269 s
[2025-11-24 19:42:37] 2025-11-25 00:23:25,588 | INFO     | nevents: 1000
[2025-11-24 19:42:37] 2025-11-25 00:23:25,588 | INFO     | neventsw: 0
[2025-11-24 19:42:37] 2025-11-25 00:23:25,588 | INFO     | pid: 1843037
[2025-11-24 19:42:37] 2025-11-25 00:23:25,588 | INFO     | pgrp: 1843037
[2025-11-24 19:42:37] 2025-11-25 00:23:25,588 | INFO     | corecount: 8
[2025-11-24 19:42:37] 2025-11-25 00:23:25,588 | INFO     | event service: False
[2025-11-24 19:42:37] 2025-11-25 00:23:25,588 | INFO     | sizes: {0: 2298534, 1: 2298733, 9: 2298995, 12: 2299023, 54660: 2349851, 54667: 2359636, 54668: 2359820, 54680: 2360130}
[2025-11-24 19:42:37] 2025-11-25 00:23:25,589 | INFO     | --------------------------------------------------
[2025-11-24 19:42:37] 2025-11-25 00:23:25,589 | INFO     | 
[2025-11-24 19:42:37] 2025-11-25 00:23:25,589 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-24 19:42:37] 2025-11-25 00:23:25,733 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 19:42:37] 2025-11-25 00:23:25,733 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 19:42:37] 2025-11-25 00:23:25,734 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 19:42:37] 2025-11-25 00:23:25,734 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 19:42:37] 2025-11-25 00:23:25,734 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 19:42:37] 2025-11-25 00:23:25,734 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 19:42:37] 2025-11-25 00:23:25,734 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 19:42:37] 2025-11-25 00:23:25,734 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 19:42:37] 2025-11-25 00:23:25,734 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 19:42:37] 2025-11-25 00:23:25,734 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 19:42:37] 2025-11-25 00:23:25,734 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 19:42:37] 2025-11-25 00:23:25,735 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 19:42:37] 2025-11-25 00:23:25,735 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 19:42:37] 2025-11-25 00:23:25,735 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 19:42:37] 2025-11-25 00:23:25,735 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 19:42:37] 2025-11-25 00:23:25,735 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 19:42:37] 2025-11-25 00:23:25,735 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 19:42:37] 2025-11-25 00:23:25,735 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 19:42:37] 2025-11-25 00:23:25,735 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 19:42:37] 2025-11-25 00:23:25,744 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 19:42:37] 2025-11-25 00:23:25,745 | INFO     | job 6895350909 has completed (purged errors)
[2025-11-24 19:42:37] 2025-11-25 00:23:25,745 | INFO     | overall cleanup function is called
[2025-11-24 19:42:37] 2025-11-25 00:23:26,805 | INFO     | --- collectZombieJob: --- 10, [1843037]
[2025-11-24 19:42:37] 2025-11-25 00:23:26,806 | INFO     | zombie collector waiting for pid 1843037
[2025-11-24 19:42:37] 2025-11-25 00:23:26,806 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 19:42:37] 2025-11-25 00:23:26,806 | INFO     | collected zombie processes
[2025-11-24 19:42:37] 2025-11-25 00:23:26,806 | INFO     | will attempt to kill all subprocesses of pid=1843037
[2025-11-24 19:42:37] 2025-11-25 00:23:27,381 | INFO     | process IDs to be killed: [1843037] (in reverse order)
[2025-11-24 19:42:37] 2025-11-25 00:23:27,655 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 19:42:37] 2025-11-25 00:23:27,656 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 19:42:37] 2025-11-25 00:23:27,675 | INFO     | did not find any defunct processes belonging to 1843037
[2025-11-24 19:42:37] 2025-11-25 00:23:27,692 | INFO     | did not find any defunct processes belonging to 1843037
[2025-11-24 19:42:37] 2025-11-25 00:23:27,693 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 19:42:37] 2025-11-25 00:23:27,693 | INFO     | ready for new job
[2025-11-24 19:42:37] 2025-11-25 00:23:27,694 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 19:42:37] 2025-11-25 00:23:27,700 | INFO     | ***************************************
[2025-11-24 19:42:37] 2025-11-25 00:23:27,700 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 19:42:37] 2025-11-25 00:23:27,700 | INFO     | ***************************************
[2025-11-24 19:42:37] 2025-11-25 00:23:27,700 | INFO     | 
[2025-11-24 19:42:37] 2025-11-25 00:23:27,707 | INFO     | architecture information:
[2025-11-24 19:42:37] 2025-11-25 00:23:27,708 | INFO     | executing command: cat /etc/os-release
[2025-11-24 19:42:37] 2025-11-25 00:23:27,748 | INFO     | cat /etc/os-release:
[2025-11-24 19:42:37] NAME="CentOS Linux"
[2025-11-24 19:42:37] VERSION="7 (Core)"
[2025-11-24 19:42:37] ID="centos"
[2025-11-24 19:42:37] ID_LIKE="rhel fedora"
[2025-11-24 19:42:37] VERSION_ID="7"
[2025-11-24 19:42:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 19:42:37] ANSI_COLOR="0;31"
[2025-11-24 19:42:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 19:42:37] HOME_URL="https://www.centos.org/"
[2025-11-24 19:42:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 19:42:37] 
[2025-11-24 19:42:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 19:42:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 19:42:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 19:42:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 19:42:37] 
[2025-11-24 19:42:37] 2025-11-25 00:23:27,749 | INFO     | ***************************************
[2025-11-24 19:42:37] 2025-11-25 00:23:28,255 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-24 19:42:37] 2025-11-25 00:23:28,286 | INFO     | sufficient remaining disk space (121058099200 B)
[2025-11-24 19:42:37] 2025-11-25 00:23:28,286 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 19:42:37] 2025-11-25 00:23:28,287 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 19:42:37] 2025-11-25 00:23:28,287 | INFO     | update_server=False
[2025-11-24 19:42:37] 2025-11-25 00:23:28,287 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 19:42:37] 2025-11-25 00:23:28,288 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 19:42:37] 2025-11-25 00:23:28,288 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 19:42:37] 2025-11-25 00:23:28,291 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 19:42:37] 2025-11-25 00:23:28,292 | INFO     | aborting loop
[2025-11-24 19:42:37] 2025-11-25 00:23:28,742 | INFO     | all job control threads have been joined
[2025-11-24 19:42:37] 2025-11-25 00:23:28,922 | INFO     | all data control threads have been joined
[2025-11-24 19:42:37] 2025-11-25 00:23:29,294 | INFO     | [job] retrieve thread has finished
[2025-11-24 19:42:37] 2025-11-25 00:23:29,298 | INFO     | [job] job monitor thread has finished
[2025-11-24 19:42:37] 2025-11-25 00:23:29,353 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 19:42:37] 2025-11-25 00:23:29,459 | INFO     | [payload] failed_post thread has finished
[2025-11-24 19:42:37] 2025-11-25 00:23:29,491 | INFO     | [job] validate thread has finished
[2025-11-24 19:42:37] 2025-11-25 00:23:29,749 | INFO     | [job] control thread has finished
[2025-11-24 19:42:37] 2025-11-25 00:23:29,797 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 19:42:37] 2025-11-25 00:23:29,803 | INFO     | all payload control threads have been joined
[2025-11-24 19:42:37] 2025-11-25 00:23:29,928 | INFO     | [data] control thread has finished
[2025-11-24 19:42:37] 2025-11-25 00:23:30,167 | INFO     | [data] copytool_in thread has finished
[2025-11-24 19:42:37] 2025-11-25 00:23:30,236 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 19:42:37] 2025-11-25 00:23:30,296 | INFO     | [data] copytool_out thread has finished
[2025-11-24 19:42:37] 2025-11-25 00:23:30,324 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 19:42:37] 2025-11-25 00:23:30,598 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 19:42:37] 2025-11-25 00:23:30,604 | INFO     | [payload] validate_post thread has finished
[2025-11-24 19:42:37] 2025-11-25 00:23:30,810 | INFO     | [payload] control thread has finished
[2025-11-24 19:42:37] 2025-11-25 00:23:31,330 | INFO     | [job] queue monitor thread has finished
[2025-11-24 19:42:37] 2025-11-25 00:23:32,296 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 19:42:37] 2025-11-25 00:23:58,451 | INFO     | PID=1802779 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 19:42:37] 2025-11-25 00:23:58,452 | INFO     | .. there are 24 such processes running
[2025-11-24 19:42:37] 2025-11-25 00:23:58,453 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 19:42:37] 2025-11-25 00:23:58,453 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 19:42:37] 2025-11-25 00:23:58,453 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 19:42:37] 2025-11-25 00:24:20,794 | INFO     | [monitor] cgroup control has ended
[2025-11-24 19:42:37] 2025-11-25 00:24:21,509 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139755697547072)>', '<ExcThread(monitor, started 139755207517952)>']
[2025-11-24 19:42:37] 2025-11-25 00:24:21,595 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 19:42:37] 2025-11-25 00:24:21,596 | INFO     | [monitor] control thread has ended
[2025-11-24 19:42:37] 2025-11-25 00:24:26,535 | INFO     | all workflow threads have been joined
[2025-11-24 19:42:37] 2025-11-25 00:24:26,535 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 19:42:37] 2025-11-25 00:24:26,536 | INFO     | traces error code: 0
[2025-11-24 19:42:37] 2025-11-25 00:24:26,536 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 19:42:37] 2025-11-25 00:24:27,005 [wrapper] ==== pilot stdout END ====
[2025-11-24 19:42:37] 2025-11-25 00:24:27,032 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 19:42:37] 2025-11-25 00:24:27,041 [wrapper] pilotpid: 1802779
[2025-11-24 19:42:37] 2025-11-25 00:24:27,045 [wrapper] Pilot exit status: 0
[2025-11-24 19:42:37] 2025-11-25 00:24:27,097 [wrapper] pandaids: 6895350909 6895350909
[2025-11-24 19:42:37] 2025-11-25 00:24:27,236 [wrapper] cleanup supervisor_pilot 3726652 1802782
[2025-11-24 19:42:37] 2025-11-25 00:24:27,240 [wrapper] Test setup, not cleaning
[2025-11-24 19:42:37] 2025-11-25 00:24:27,243 [wrapper] apfmon messages muted
[2025-11-24 19:42:37] 2025-11-25 00:24:27,247 [wrapper] ==== wrapper stdout END ====
[2025-11-24 19:42:37] 2025-11-25 00:24:27,250 [wrapper] ==== wrapper stderr END ====
[2025-11-24 19:42:37]  *** Error codes and diagnostics ***
[2025-11-24 19:42:37]     "exeErrorCode": 0,
[2025-11-24 19:42:37]     "exeErrorDiag": "",
[2025-11-24 19:42:37]     "pilotErrorCode": 0,
[2025-11-24 19:42:37]     "pilotErrorDiag": "",
[2025-11-24 19:42:37]  *** Listing of results directory ***
[2025-11-24 19:42:37] total 1702044
[2025-11-24 19:42:37] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-24 19:42:37] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 17:07 pilot3.tar.gz
[2025-11-24 19:42:37] -rwx------. 1 boincer umatlas     36292 Nov 22 17:39 runpilot2-wrapper.sh
[2025-11-24 19:42:37] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 17:39 queuedata.json
[2025-11-24 19:42:37] -rw-r--r--. 1 boincer umatlas       100 Nov 24 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 19:42:37] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 00:04 run_atlas
[2025-11-24 19:42:37] -rw-r--r--. 1 boincer umatlas       105 Nov 24 00:04 job.xml
[2025-11-24 19:42:37] -rw-r--r--. 3 boincer umatlas 410017317 Nov 24 00:04 EVNT.47483658._000528.pool.root.1
[2025-11-24 19:42:37] -rw-r--r--. 3 boincer umatlas 410017317 Nov 24 00:04 ATLAS.root_0
[2025-11-24 19:42:37] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 00:04 shared
[2025-11-24 19:42:37] -rw-r--r--. 2 boincer umatlas    590102 Nov 24 00:04 input.tar.gz
[2025-11-24 19:42:37] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:04 start_atlas.sh
[2025-11-24 19:42:37] -rw-r--r--. 1 boincer umatlas         0 Nov 24 00:04 boinc_lockfile
[2025-11-24 19:42:37] -rw-r--r--. 1 boincer umatlas      2784 Nov 24 04:11 pandaJob.out
[2025-11-24 19:42:37] -rw-------. 1 boincer umatlas        57 Nov 24 04:11 setup.sh.local
[2025-11-24 19:42:37] -rw-------. 1 boincer umatlas    989794 Nov 24 04:11 agis_schedconf.cvmfs.json
[2025-11-24 19:42:37] -rw-r--r--. 1 boincer umatlas       532 Nov 24 19:10 boinc_task_state.xml
[2025-11-24 19:42:37] -rw-------. 1 boincer umatlas 900607540 Nov 24 19:22 HITS.47556137._005236.pool.root.1
[2025-11-24 19:42:37] -rw-------. 1 boincer umatlas      1072 Nov 24 19:23 memory_monitor_summary.json
[2025-11-24 19:42:37] -rw-------. 1 boincer umatlas   1516227 Nov 24 19:23 agis_ddmendpoints.agis.ALL.json
[2025-11-24 19:42:37] -rw-------. 1 boincer umatlas   2085880 Nov 24 19:23 log.47556137._005236.job.log.tgz.1
[2025-11-24 19:42:37] -rw-------. 1 boincer umatlas      8646 Nov 24 19:23 heartbeat.json
[2025-11-24 19:42:37] -rw-------. 1 boincer umatlas        96 Nov 24 19:23 pilot_heartbeat.json
[2025-11-24 19:42:37] -rw-------. 1 boincer umatlas      4825 Nov 24 19:24 pilotlog.txt
[2025-11-24 19:42:37] -rw-------. 1 boincer umatlas   7076835 Nov 24 19:24 log.47556137._005236.job.log.1
[2025-11-24 19:42:37] -rw-------. 1 boincer umatlas       353 Nov 24 19:24 output.list
[2025-11-24 19:42:37] -rw-r--r--. 1 boincer umatlas       620 Nov 24 19:24 runtime_log
[2025-11-24 19:42:37] -rw-------. 1 boincer umatlas   9185280 Nov 24 19:24 result.tar.gz
[2025-11-24 19:42:37] -rw-r--r--. 1 boincer umatlas      9438 Nov 24 19:24 runtime_log.err
[2025-11-24 19:42:37] -rw-------. 1 boincer umatlas       791 Nov 24 19:24 elrKDmNRBh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm8KIKDmcC5TIm.diag
[2025-11-24 19:42:37] -rw-r--r--. 1 boincer umatlas      6880 Nov 24 19:37 init_data.xml
[2025-11-24 19:42:37] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 19:42 boinc_mmap_file
[2025-11-24 19:42:37] -rw-r--r--. 1 boincer umatlas        28 Nov 24 19:42 wrapper_checkpoint.txt
[2025-11-24 19:42:37] -rw-r--r--. 1 boincer umatlas     23312 Nov 24 19:42 stderr.txt
[2025-11-24 19:42:37] HITS file was successfully produced:
[2025-11-24 19:42:37] -rw-------. 1 boincer umatlas 900607540 Nov 24 19:22 shared/HITS.pool.root.1
[2025-11-24 19:42:37]  *** Contents of shared directory: ***
[2025-11-24 19:42:37] total 1289484
[2025-11-24 19:42:37] -rw-r--r--. 3 boincer umatlas 410017317 Nov 24 00:04 ATLAS.root_0
[2025-11-24 19:42:37] -rw-r--r--. 2 boincer umatlas    590102 Nov 24 00:04 input.tar.gz
[2025-11-24 19:42:37] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:04 start_atlas.sh
[2025-11-24 19:42:37] -rw-------. 1 boincer umatlas 900607540 Nov 24 19:22 HITS.pool.root.1
[2025-11-24 19:42:37] -rw-------. 1 boincer umatlas   9185280 Nov 24 19:24 result.tar.gz
19:42:59 (1781753): run_atlas exited; CPU time 287844.363273
19:42:59 (1781753): called boinc_finish(0)

</stderr_txt>
]]>

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