Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:40:21 (3546998): wrapper (7.7.26015): starting
15:40:21 (3546998): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 15:40:21] Arguments: --nthreads 8
[2025-11-23 15:40:21] Threads: 8
[2025-11-23 15:40:21] Checking for CVMFS
[2025-11-23 15:40:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 15:40:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 15:40:22] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 15:40:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 15:40:24] 2.13.2.0 3557600 19020 162440 153220 3 466 27257947 40960001 31639 16776704 0 187718368 99.718 140558953 49243 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 15:40:24] CVMFS is ok
[2025-11-23 15:40:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 15:40:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 15:40:24] Further information can be found at the LHC@home message board.
[2025-11-23 15:40:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 15:40:24] Checking for apptainer binary...
[2025-11-23 15:40:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 15:40:24] Running /usr/bin/apptainer --version
[2025-11-23 15:40:24] apptainer version 1.4.4-1.el9
[2025-11-23 15:40:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 15:40:25] c-208-40.aglt2.org
[2025-11-23 15:40:25] apptainer works
[2025-11-23 15:40:25] Set ATHENA_PROC_NUMBER=8
[2025-11-23 15:40:25] Set ATHENA_CORE_NUMBER=8
[2025-11-23 15:40:25] Starting ATLAS job with PandaID=6891558664
[2025-11-23 15:40:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 06:46:49]  *** The last 200 lines of the pilot log: ***
[2025-11-24 06:46:49] 2025-11-24 11:45:58,583 | INFO     | time since job start (54251s) is within the limit (172800.0s)
[2025-11-24 06:46:49] 2025-11-24 11:46:00,028 | INFO     | monitor loop #3123: job 0:6891558664 is in state 'finished'
[2025-11-24 06:46:49] 2025-11-24 11:46:00,028 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 06:46:49] 2025-11-24 11:46:00,590 | INFO     | time since job start (54253s) is within the limit (172800.0s)
[2025-11-24 06:46:49] 2025-11-24 11:46:02,533 | INFO     | monitor loop #3124: job 0:6891558664 is in state 'finished'
[2025-11-24 06:46:49] 2025-11-24 11:46:02,533 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 06:46:49] 2025-11-24 11:46:02,598 | INFO     | time since job start (54255s) is within the limit (172800.0s)
[2025-11-24 06:46:49] 2025-11-24 11:46:05,062 | INFO     | monitor loop #3125: job 0:6891558664 is in state 'finished'
[2025-11-24 06:46:49] 2025-11-24 11:46:05,062 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 06:46:49] 2025-11-24 11:46:07,260 | INFO     | PID=3564406 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 06:46:49] 2025-11-24 11:46:07,260 | INFO     | .. there are 47 such processes running
[2025-11-24 06:46:49] 2025-11-24 11:46:07,592 | INFO     | monitor loop #3126: job 0:6891558664 is in state 'finished'
[2025-11-24 06:46:49] 2025-11-24 11:46:07,592 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 06:46:49] 2025-11-24 11:46:08,262 | INFO     | time since job start (54261s) is within the limit (172800.0s)
[2025-11-24 06:46:49] 2025-11-24 11:46:10,037 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-24 06:46:49] 2025-11-24 11:46:10,103 | INFO     | monitor loop #3127: job 0:6891558664 is in state 'finished'
[2025-11-24 06:46:49] 2025-11-24 11:46:10,103 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 06:46:49] 2025-11-24 11:46:10,242 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3798.347390625001
[2025-11-24 06:46:49] 2025-11-24 11:46:10,268 | INFO     | time since job start (54263s) is within the limit (172800.0s)
[2025-11-24 06:46:49] 2025-11-24 11:46:10,547 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6891558664/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 06:46:49] 2025-11-24 11:46:10,547 | INFO     | extracted standard info from prmon json
[2025-11-24 06:46:49] 2025-11-24 11:46:10,547 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 06:46:49] 2025-11-24 11:46:10,547 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 06:46:49] 2025-11-24 11:46:10,614 | INFO     | fitting pss+swap vs Time
[2025-11-24 06:46:49] 2025-11-24 11:46:10,615 | INFO     | sum of square deviations: 215677437958.6696
[2025-11-24 06:46:49] 2025-11-24 11:46:10,752 | INFO     | sum of deviations: 2374239899822.8657
[2025-11-24 06:46:49] 2025-11-24 11:46:10,752 | INFO     | mean x: 1763957673.265237
[2025-11-24 06:46:49] 2025-11-24 11:46:10,752 | INFO     | mean y: 2947544.8431151244
[2025-11-24 06:46:49] 2025-11-24 11:46:10,752 | INFO     | intersect: -19415211021.504433
[2025-11-24 06:46:49] 2025-11-24 11:46:10,753 | INFO     | chi2: 35.32705876765966
[2025-11-24 06:46:49] 2025-11-24 11:46:10,753 | INFO     | sum of square deviations: 212047540352.71985
[2025-11-24 06:46:49] 2025-11-24 11:46:10,846 | INFO     | sum of deviations: 2671452328337.1533
[2025-11-24 06:46:49] 2025-11-24 11:46:10,847 | INFO     | mean x: 1763957520.7809308
[2025-11-24 06:46:49] 2025-11-24 11:46:10,847 | INFO     | mean y: 2960026.783200908
[2025-11-24 06:46:49] 2025-11-24 11:46:10,847 | INFO     | intersect: -22220020811.09666
[2025-11-24 06:46:49] 2025-11-24 11:46:10,847 | INFO     | chi2: 31.891361217177955
[2025-11-24 06:46:49] 2025-11-24 11:46:10,847 | INFO     | current chi2=31.891361217177955 (change=9.725399369015486 %)
[2025-11-24 06:46:49] 2025-11-24 11:46:10,847 | INFO     | right removable region: 880
[2025-11-24 06:46:49] 2025-11-24 11:46:10,851 | INFO     | sum of square deviations: 212046045852.71967
[2025-11-24 06:46:49] 2025-11-24 11:46:10,906 | INFO     | sum of deviations: 1986092145694.5525
[2025-11-24 06:46:49] 2025-11-24 11:46:10,906 | INFO     | mean x: 1763957825.7809308
[2025-11-24 06:46:49] 2025-11-24 11:46:10,906 | INFO     | mean y: 2963845.438138479
[2025-11-24 06:46:49] 2025-11-24 11:46:10,906 | INFO     | intersect: -16518838148.234892
[2025-11-24 06:46:49] 2025-11-24 11:46:10,906 | INFO     | chi2: 30.488504754209387
[2025-11-24 06:46:49] 2025-11-24 11:46:10,907 | INFO     | current chi2=30.488504754209387 (change=13.69645303695577 %)
[2025-11-24 06:46:49] 2025-11-24 11:46:10,907 | INFO     | left removable region: 10
[2025-11-24 06:46:49] 2025-11-24 11:46:10,907 | INFO     | sum of square deviations: 204202690014.0749
[2025-11-24 06:46:49] 2025-11-24 11:46:10,967 | INFO     | sum of deviations: 1986388865213.2627
[2025-11-24 06:46:49] 2025-11-24 11:46:10,968 | INFO     | mean x: 1763957795.316092
[2025-11-24 06:46:49] 2025-11-24 11:46:10,968 | INFO     | mean y: 2994105.5735632186
[2025-11-24 06:46:49] 2025-11-24 11:46:10,968 | INFO     | intersect: -17155967527.50047
[2025-11-24 06:46:49] 2025-11-24 11:46:10,968 | INFO     | chi2: 22.52826536071425
[2025-11-24 06:46:49] 2025-11-24 11:46:10,968 | INFO     | current memory leak: 9.73 B/s (using 870 data points, chi2=22.53)
[2025-11-24 06:46:49] 2025-11-24 11:46:10,969 | INFO     | could have reported an average CPU frequency of 3797 MHz (33 samples)
[2025-11-24 06:46:49] 2025-11-24 11:46:10,969 | INFO     | ..............................
[2025-11-24 06:46:49] 2025-11-24 11:46:10,969 | INFO     | . Timing measurements:
[2025-11-24 06:46:49] 2025-11-24 11:46:10,969 | INFO     | . get job = 0 s
[2025-11-24 06:46:49] 2025-11-24 11:46:10,969 | INFO     | . initial setup = 8 s
[2025-11-24 06:46:49] 2025-11-24 11:46:10,969 | INFO     | . payload setup = 53 s
[2025-11-24 06:46:49] 2025-11-24 11:46:10,969 | INFO     | . stage-in = 0 s
[2025-11-24 06:46:49] 2025-11-24 11:46:10,969 | INFO     | . payload execution = 54079 s
[2025-11-24 06:46:49] 2025-11-24 11:46:10,969 | INFO     | . stage-out = 7 s
[2025-11-24 06:46:49] 2025-11-24 11:46:10,969 | INFO     | . log creation = 1 s
[2025-11-24 06:46:49] 2025-11-24 11:46:10,970 | INFO     | ..............................
[2025-11-24 06:46:49] 2025-11-24 11:46:11,271 | INFO     | 
[2025-11-24 06:46:49] 2025-11-24 11:46:11,284 | INFO     | job summary report
[2025-11-24 06:46:49] 2025-11-24 11:46:11,284 | INFO     | --------------------------------------------------
[2025-11-24 06:46:49] 2025-11-24 11:46:11,284 | INFO     | PanDA job id: 6891558664
[2025-11-24 06:46:49] 2025-11-24 11:46:11,284 | INFO     | task id: 47493068
[2025-11-24 06:46:49] 2025-11-24 11:46:11,284 | INFO     | errors: (none)
[2025-11-24 06:46:49] 2025-11-24 11:46:11,284 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 06:46:49] 2025-11-24 11:46:11,284 | INFO     | pilot state: finished 
[2025-11-24 06:46:49] 2025-11-24 11:46:11,284 | INFO     | transexitcode: 0
[2025-11-24 06:46:49] 2025-11-24 11:46:11,284 | INFO     | exeerrorcode: 0
[2025-11-24 06:46:49] 2025-11-24 11:46:11,284 | INFO     | exeerrordiag: 
[2025-11-24 06:46:49] 2025-11-24 11:46:11,284 | INFO     | exitcode: 0
[2025-11-24 06:46:49] 2025-11-24 11:46:11,284 | INFO     | exitmsg: OK
[2025-11-24 06:46:49] 2025-11-24 11:46:11,284 | INFO     | cpuconsumptiontime: 142743 s
[2025-11-24 06:46:49] 2025-11-24 11:46:11,285 | INFO     | nevents: 1000
[2025-11-24 06:46:49] 2025-11-24 11:46:11,285 | INFO     | neventsw: 0
[2025-11-24 06:46:49] 2025-11-24 11:46:11,285 | INFO     | pid: 3601051
[2025-11-24 06:46:49] 2025-11-24 11:46:11,285 | INFO     | pgrp: 3601051
[2025-11-24 06:46:49] 2025-11-24 11:46:11,285 | INFO     | corecount: 8
[2025-11-24 06:46:49] 2025-11-24 11:46:11,285 | INFO     | event service: False
[2025-11-24 06:46:49] 2025-11-24 11:46:11,285 | INFO     | sizes: {0: 2298621, 1: 2298649, 2: 2298820, 13: 2298848, 24: 2298904, 34: 2298932, 36: 2299350, 45: 2299378, 54134: 2348660, 54142: 2358445, 54143: 2358501, 54180:
[2025-11-24 06:46:49] 2025-11-24 11:46:11,285 | INFO     | --------------------------------------------------
[2025-11-24 06:46:49] 2025-11-24 11:46:11,285 | INFO     | 
[2025-11-24 06:46:49] 2025-11-24 11:46:11,285 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-24 06:46:49] 2025-11-24 11:46:11,407 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 06:46:49] 2025-11-24 11:46:11,408 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 06:46:49] 2025-11-24 11:46:11,408 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 06:46:49] 2025-11-24 11:46:11,408 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 06:46:49] 2025-11-24 11:46:11,408 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 06:46:49] 2025-11-24 11:46:11,408 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 06:46:49] 2025-11-24 11:46:11,408 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 06:46:49] 2025-11-24 11:46:11,408 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 06:46:49] 2025-11-24 11:46:11,408 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 06:46:49] 2025-11-24 11:46:11,408 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 06:46:49] 2025-11-24 11:46:11,408 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 06:46:49] 2025-11-24 11:46:11,408 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 06:46:49] 2025-11-24 11:46:11,408 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 06:46:49] 2025-11-24 11:46:11,408 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 06:46:49] 2025-11-24 11:46:11,408 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 06:46:49] 2025-11-24 11:46:11,408 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 06:46:49] 2025-11-24 11:46:11,408 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 06:46:49] 2025-11-24 11:46:11,408 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 06:46:49] 2025-11-24 11:46:11,408 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 06:46:49] 2025-11-24 11:46:11,408 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 06:46:49] 2025-11-24 11:46:11,409 | INFO     | job 6891558664 has completed (purged errors)
[2025-11-24 06:46:49] 2025-11-24 11:46:11,409 | INFO     | overall cleanup function is called
[2025-11-24 06:46:49] 2025-11-24 11:46:12,444 | INFO     | --- collectZombieJob: --- 10, [3601051]
[2025-11-24 06:46:49] 2025-11-24 11:46:12,444 | INFO     | zombie collector waiting for pid 3601051
[2025-11-24 06:46:49] 2025-11-24 11:46:12,444 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 06:46:49] 2025-11-24 11:46:12,444 | INFO     | collected zombie processes
[2025-11-24 06:46:49] 2025-11-24 11:46:12,444 | INFO     | will attempt to kill all subprocesses of pid=3601051
[2025-11-24 06:46:49] 2025-11-24 11:46:14,275 | INFO     | process IDs to be killed: [3601051] (in reverse order)
[2025-11-24 06:46:49] 2025-11-24 11:46:14,579 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 06:46:49] 2025-11-24 11:46:14,579 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 06:46:49] 2025-11-24 11:46:14,611 | INFO     | did not find any defunct processes belonging to 3601051
[2025-11-24 06:46:49] 2025-11-24 11:46:14,691 | INFO     | did not find any defunct processes belonging to 3601051
[2025-11-24 06:46:49] 2025-11-24 11:46:14,693 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 06:46:49] 2025-11-24 11:46:14,693 | INFO     | ready for new job
[2025-11-24 06:46:49] 2025-11-24 11:46:14,693 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 06:46:49] 2025-11-24 11:46:14,695 | INFO     | ***************************************
[2025-11-24 06:46:49] 2025-11-24 11:46:14,695 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 06:46:49] 2025-11-24 11:46:14,695 | INFO     | ***************************************
[2025-11-24 06:46:49] 2025-11-24 11:46:14,695 | INFO     | 
[2025-11-24 06:46:49] 2025-11-24 11:46:14,700 | INFO     | architecture information:
[2025-11-24 06:46:49] 2025-11-24 11:46:14,702 | INFO     | executing command: cat /etc/os-release
[2025-11-24 06:46:49] 2025-11-24 11:46:14,766 | INFO     | cat /etc/os-release:
[2025-11-24 06:46:49] NAME="CentOS Linux"
[2025-11-24 06:46:49] VERSION="7 (Core)"
[2025-11-24 06:46:49] ID="centos"
[2025-11-24 06:46:49] ID_LIKE="rhel fedora"
[2025-11-24 06:46:49] VERSION_ID="7"
[2025-11-24 06:46:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 06:46:49] ANSI_COLOR="0;31"
[2025-11-24 06:46:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 06:46:49] HOME_URL="https://www.centos.org/"
[2025-11-24 06:46:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 06:46:49] 
[2025-11-24 06:46:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 06:46:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 06:46:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 06:46:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 06:46:49] 
[2025-11-24 06:46:49] 2025-11-24 11:46:14,766 | INFO     | ***************************************
[2025-11-24 06:46:49] 2025-11-24 11:46:15,269 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-24 06:46:49] 2025-11-24 11:46:15,437 | INFO     | sufficient remaining disk space (158377967616 B)
[2025-11-24 06:46:49] 2025-11-24 11:46:15,439 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 06:46:49] 2025-11-24 11:46:15,441 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 06:46:49] 2025-11-24 11:46:15,442 | INFO     | update_server=False
[2025-11-24 06:46:49] 2025-11-24 11:46:15,442 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 06:46:49] 2025-11-24 11:46:15,873 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 06:46:49] 2025-11-24 11:46:15,935 | INFO     | all job control threads have been joined
[2025-11-24 06:46:49] 2025-11-24 11:46:16,243 | INFO     | all data control threads have been joined
[2025-11-24 06:46:49] 2025-11-24 11:46:16,297 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 06:46:49] 2025-11-24 11:46:16,306 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 06:46:49] 2025-11-24 11:46:16,306 | INFO     | aborting loop
[2025-11-24 06:46:49] 2025-11-24 11:46:16,448 | INFO     | [job] retrieve thread has finished
[2025-11-24 06:46:49] 2025-11-24 11:46:16,799 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 06:46:49] 2025-11-24 11:46:16,842 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 06:46:49] 2025-11-24 11:46:16,891 | INFO     | all payload control threads have been joined
[2025-11-24 06:46:49] 2025-11-24 11:46:16,942 | INFO     | [job] control thread has finished
[2025-11-24 06:46:49] 2025-11-24 11:46:17,108 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 06:46:49] 2025-11-24 11:46:17,135 | INFO     | [payload] validate_post thread has finished
[2025-11-24 06:46:49] 2025-11-24 11:46:17,179 | INFO     | [payload] failed_post thread has finished
[2025-11-24 06:46:49] 2025-11-24 11:46:17,262 | INFO     | [data] control thread has finished
[2025-11-24 06:46:49] 2025-11-24 11:46:17,303 | INFO     | [job] queue monitor thread has finished
[2025-11-24 06:46:49] 2025-11-24 11:46:17,312 | INFO     | [job] job monitor thread has finished
[2025-11-24 06:46:49] 2025-11-24 11:46:17,805 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 06:46:49] 2025-11-24 11:46:17,805 | INFO     | [job] validate thread has finished
[2025-11-24 06:46:49] 2025-11-24 11:46:17,811 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 06:46:49] 2025-11-24 11:46:17,897 | INFO     | [payload] control thread has finished
[2025-11-24 06:46:49] 2025-11-24 11:46:17,941 | INFO     | [data] copytool_in thread has finished
[2025-11-24 06:46:49] 2025-11-24 11:46:18,806 | INFO     | [data] copytool_out thread has finished
[2025-11-24 06:46:49] 2025-11-24 11:46:19,899 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 06:46:49] 2025-11-24 11:46:25,506 | INFO     | [monitor] cgroup control has ended
[2025-11-24 06:46:49] 2025-11-24 11:46:26,674 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139795438839616)>', '<ExcThread(monitor, started 139794650744576)>']
[2025-11-24 06:46:49] 2025-11-24 11:46:31,700 | INFO     | all workflow threads have been joined
[2025-11-24 06:46:49] 2025-11-24 11:46:31,700 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 06:46:49] 2025-11-24 11:46:31,703 | INFO     | traces error code: 0
[2025-11-24 06:46:49] 2025-11-24 11:46:31,704 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 06:46:49] 2025-11-24 11:46:45,308 | INFO     | PID=3564406 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 06:46:49] 2025-11-24 11:46:45,309 | INFO     | .. there are 47 such processes running
[2025-11-24 06:46:49] 2025-11-24 11:46:45,309 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 06:46:49] 2025-11-24 11:46:45,309 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 06:46:49] 2025-11-24 11:46:45,309 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 06:46:49] 2025-11-24 11:46:45,310 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 06:46:49] 2025-11-24 11:46:45,310 | INFO     | [monitor] control thread has ended
[2025-11-24 06:46:49] 2025-11-24 11:46:47,203 [wrapper] ==== pilot stdout END ====
[2025-11-24 06:46:49] 2025-11-24 11:46:47,239 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 06:46:49] 2025-11-24 11:46:47,272 [wrapper] pilotpid: 3564406
[2025-11-24 06:46:49] 2025-11-24 11:46:47,307 [wrapper] Pilot exit status: 0
[2025-11-24 06:46:49] 2025-11-24 11:46:47,449 [wrapper] pandaids: 6891558664
[2025-11-24 06:46:49] 2025-11-24 11:46:47,937 [wrapper] cleanup supervisor_pilot 1232301 3564407
[2025-11-24 06:46:49] 2025-11-24 11:46:47,966 [wrapper] Test setup, not cleaning
[2025-11-24 06:46:49] 2025-11-24 11:46:48,030 [wrapper] apfmon messages muted
[2025-11-24 06:46:49] 2025-11-24 11:46:48,111 [wrapper] ==== wrapper stdout END ====
[2025-11-24 06:46:49] 2025-11-24 11:46:48,146 [wrapper] ==== wrapper stderr END ====
[2025-11-24 06:46:49]  *** Error codes and diagnostics ***
[2025-11-24 06:46:49]     "exeErrorCode": 0,
[2025-11-24 06:46:49]     "exeErrorDiag": "",
[2025-11-24 06:46:49]     "pilotErrorCode": 0,
[2025-11-24 06:46:49]     "pilotErrorDiag": "",
[2025-11-24 06:46:49]  *** Listing of results directory ***
[2025-11-24 06:46:49] total 1328668
[2025-11-24 06:46:49] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 10:15 pilot3.tar.gz
[2025-11-24 06:46:49] -rwx------. 1 boincer umatlas     36292 Nov 18 10:24 runpilot2-wrapper.sh
[2025-11-24 06:46:49] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 10:24 queuedata.json
[2025-11-24 06:46:49] -rw-r--r--. 1 boincer umatlas       100 Nov 23 15:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 06:46:49] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 23 15:40 run_atlas
[2025-11-24 06:46:49] -rw-r--r--. 1 boincer umatlas       105 Nov 23 15:40 job.xml
[2025-11-24 06:46:49] -rw-r--r--. 2 boincer umatlas 409433134 Nov 23 15:40 EVNT.47493065._000070.pool.root.1
[2025-11-24 06:46:49] -rw-r--r--. 2 boincer umatlas    590095 Nov 23 15:40 input.tar.gz
[2025-11-24 06:46:49] -rw-r--r--. 2 boincer umatlas     15120 Nov 23 15:40 start_atlas.sh
[2025-11-24 06:46:49] drwxrwx--x. 2 boincer umatlas      4096 Nov 23 15:40 shared
[2025-11-24 06:46:49] -rw-r--r--. 1 boincer umatlas         0 Nov 23 15:40 boinc_lockfile
[2025-11-24 06:46:49] -rw-r--r--. 1 boincer umatlas      2771 Nov 23 15:40 pandaJob.out
[2025-11-24 06:46:49] -rw-r--r--. 1 boincer umatlas      2078 Nov 23 15:40 stderr.txt
[2025-11-24 06:46:49] -rw-------. 1 boincer umatlas    989786 Nov 23 15:41 agis_schedconf.cvmfs.json
[2025-11-24 06:46:49] drwx------. 5 boincer umatlas      4096 Nov 23 15:41 pilot3
[2025-11-24 06:46:49] -rw-r--r--. 1 boincer umatlas       533 Nov 24 06:01 boinc_task_state.xml
[2025-11-24 06:46:49] -rw-------. 1 boincer umatlas 929784813 Nov 24 06:43 HITS.47493068._000699.pool.root.1
[2025-11-24 06:46:49] -rw-------. 1 boincer umatlas      1079 Nov 24 06:45 memory_monitor_summary.json
[2025-11-24 06:46:49] -rw-------. 1 boincer umatlas   1516227 Nov 24 06:45 agis_ddmendpoints.agis.ALL.json
[2025-11-24 06:46:49] -rw-------. 1 boincer umatlas   2050181 Nov 24 06:45 log.47493068._000699.job.log.tgz.1
[2025-11-24 06:46:49] -rw-r--r--. 1 boincer umatlas      7176 Nov 24 06:45 init_data.xml
[2025-11-24 06:46:49] -rw-------. 1 boincer umatlas      8643 Nov 24 06:46 heartbeat.json
[2025-11-24 06:46:49] -rw-------. 1 boincer umatlas       823 Nov 24 06:46 pilotlog.txt
[2025-11-24 06:46:49] -rw-------. 1 boincer umatlas        95 Nov 24 06:46 pilot_heartbeat.json
[2025-11-24 06:46:49] -rw-r--r--. 1 boincer umatlas        29 Nov 24 06:46 wrapper_checkpoint.txt
[2025-11-24 06:46:49] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 06:46 boinc_mmap_file
[2025-11-24 06:46:49] -rw-------. 1 boincer umatlas   6676117 Nov 24 06:46 log.47493068._000699.job.log.1
[2025-11-24 06:46:49] -rw-------. 1 boincer umatlas       353 Nov 24 06:46 output.list
[2025-11-24 06:46:49] -rw-r--r--. 1 boincer umatlas       620 Nov 24 06:46 runtime_log
[2025-11-24 06:46:49] -rw-------. 1 boincer umatlas   8744960 Nov 24 06:46 result.tar.gz
[2025-11-24 06:46:49] -rw-r--r--. 1 boincer umatlas      8704 Nov 24 06:46 runtime_log.err
[2025-11-24 06:46:49] -rw-------. 1 boincer umatlas       666 Nov 24 06:46 nMjMDmckcf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmDNFKDmOgVRNm.diag
[2025-11-24 06:46:49] HITS file was successfully produced:
[2025-11-24 06:46:49] -rw-------. 1 boincer umatlas 929784813 Nov 24 06:43 shared/HITS.pool.root.1
[2025-11-24 06:46:49]  *** Contents of shared directory: ***
[2025-11-24 06:46:49] total 1316976
[2025-11-24 06:46:49] -rw-r--r--. 2 boincer umatlas 409433134 Nov 23 15:40 ATLAS.root_0
[2025-11-24 06:46:49] -rw-r--r--. 2 boincer umatlas    590095 Nov 23 15:40 input.tar.gz
[2025-11-24 06:46:49] -rw-r--r--. 2 boincer umatlas     15120 Nov 23 15:40 start_atlas.sh
[2025-11-24 06:46:49] -rw-------. 1 boincer umatlas 929784813 Nov 24 06:43 HITS.pool.root.1
[2025-11-24 06:46:49] -rw-------. 1 boincer umatlas   8744960 Nov 24 06:46 result.tar.gz
06:47:12 (3546998): run_atlas exited; CPU time 143351.023698
06:47:12 (3546998): called boinc_finish(0)

</stderr_txt>
]]>

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