Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:11:52 (90032): wrapper (7.7.26015): starting
11:11:52 (90032): wrapper: running run_atlas (--nthreads 12)
[2025-11-23 11:11:52] Arguments: --nthreads 12
[2025-11-23 11:11:52] Threads: 12
[2025-11-23 11:11:52] Checking for CVMFS
[2025-11-23 11:11:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 11:11:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 11:11:53] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 11:11:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 11:11:53] 2.11.5.0 3814305 24185 141572 153218 4 1 28512145 45568001 11551 130560 0 250520190 99.801 136671432 19997 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-23 11:11:53] CVMFS is ok
[2025-11-23 11:11:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 11:11:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 11:11:53] Further information can be found at the LHC@home message board.
[2025-11-23 11:11:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 11:11:53] Checking for apptainer binary...
[2025-11-23 11:11:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 11:11:53] Running /usr/bin/apptainer --version
[2025-11-23 11:11:53] apptainer version 1.4.1-1.el9
[2025-11-23 11:11:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 11:11:53] wns0094.triumf.lcg
[2025-11-23 11:11:53] apptainer works
[2025-11-23 11:11:53] Set ATHENA_PROC_NUMBER=12
[2025-11-23 11:11:53] Set ATHENA_CORE_NUMBER=12
[2025-11-23 11:11:53] Starting ATLAS job with PandaID=6894052262
[2025-11-23 11:11:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 11:15:23]  *** The last 200 lines of the pilot log: ***
[2025-11-23 11:15:23] 2025-11-23 19:14:50,784 | WARNING  | found no stored workdir sizes
[2025-11-23 11:15:23] 2025-11-23 19:14:50,784 | INFO     | will not add max space = 0 B to job metrics
[2025-11-23 11:15:23] 2025-11-23 19:14:50,784 | WARNING  | wrong length of table data, x=[1763925149.0], y=[1084.0] (must be same and length>=4)
[2025-11-23 11:15:23] 2025-11-23 19:14:50,785 | INFO     | could have reported an average CPU frequency of 2462 MHz (4 samples)
[2025-11-23 11:15:23] 2025-11-23 19:14:50,785 | INFO     | ..............................
[2025-11-23 11:15:23] 2025-11-23 19:14:50,785 | INFO     | . Timing measurements:
[2025-11-23 11:15:23] 2025-11-23 19:14:50,785 | INFO     | . get job = 0 s
[2025-11-23 11:15:23] 2025-11-23 19:14:50,785 | INFO     | . initial setup = 3 s
[2025-11-23 11:15:23] 2025-11-23 19:14:50,785 | INFO     | . payload setup = 5 s
[2025-11-23 11:15:23] 2025-11-23 19:14:50,785 | INFO     | . stage-in = 0 s
[2025-11-23 11:15:23] 2025-11-23 19:14:50,785 | INFO     | . payload execution = 22 s
[2025-11-23 11:15:23] 2025-11-23 19:14:50,785 | INFO     | . stage-out = 0 s
[2025-11-23 11:15:23] 2025-11-23 19:14:50,785 | INFO     | . log creation = 0 s
[2025-11-23 11:15:23] 2025-11-23 19:14:50,785 | INFO     | ..............................
[2025-11-23 11:15:23] 2025-11-23 19:14:50,785 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-23 11:15:23] 2025-11-23 19:14:50,785 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6894052262/pilotlog.txt
[2025-11-23 11:15:23] 2025-11-23 19:14:50,798 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-23 11:15:23] - Log from pilotlog.txt -
[2025-11-23 11:15:23] 2025-11-23 19:14:50,783 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 11:15:23] 2025-11-23 19:14:50,783 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 11:15:23] 2025-11-23 19:14:50,784 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-23 11:15:23] 2025-11-23 19:14:50,784 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-23 11:15:23] 2025-11-23 19:14:50,784 | WARNING  | found no stored workdir sizes
[2025-11-23 11:15:23] 2025-11-23 19:14:50,784 | INFO     | will not add max space = 0 B to job metrics
[2025-11-23 11:15:23] 2025-11-23 19:14:50,784 | WARNING  | wrong length of table data, x=[1763925149.0], y=[1084.0] (must be same and length>=4)
[2025-11-23 11:15:23] 2025-11-23 19:14:50,785 | INFO     | could have reported an average CPU frequency of 2462 MHz (4 samples)
[2025-11-23 11:15:23] 2025-11-23 19:14:50,785 | INFO     | ..............................
[2025-11-23 11:15:23] 2025-11-23 19:14:50,785 | INFO     | . Timing measurements:
[2025-11-23 11:15:23] 2025-11-23 19:14:50,785 | INFO     | . get job = 0 s
[2025-11-23 11:15:23] 2025-11-23 19:14:50,785 | INFO     | . initial setup = 3 s
[2025-11-23 11:15:23] 2025-11-23 19:14:50,785 | INFO     | . payload setup = 5 s
[2025-11-23 11:15:23] 2025-11-23 19:14:50,785 | INFO     | . stage-in = 0 s
[2025-11-23 11:15:23] 2025-11-23 19:14:50,785 | INFO     | . payload execution = 22 s
[2025-11-23 11:15:23] 2025-11-23 19:14:50,785 | INFO     | . stage-out = 0 s
[2025-11-23 11:15:23] 2025-11-23 19:14:50,785 | INFO     | . log creation = 0 s
[2025-11-23 11:15:23] 2025-11-23 19:14:50,785 | INFO     | ..............................
[2025-11-23 11:15:23] 2025-11-23 19:14:50,785 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-23 11:15:23] 2025-11-23 19:14:50,785 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6894052262/pilotlog.txt
[2025-11-23 11:15:23] 2025-11-23 19:14:50,798 | WARNING  | 
[2025-11-23 11:15:23] [begin log extracts]
[2025-11-23 11:15:23] - Log from pilotlog.txt -
[2025-11-23 11:15:23] 2025-11-23 19:14:50,783 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 11:15:23] 2025-11-23 19:14:50,783 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 11:15:23] 2025-11-23 19:14:50,784 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-23 11:15:23] 2025-11-23 19:14:50,784 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-23 11:15:23] 2025-11-23 19:14:50,784 | WARNING  | found no stored workdir sizes
[2025-11-23 11:15:23] 2025-11-23 19:14:50,784 | INFO     | will not add max space = 0 B to job metrics
[2025-11-23 11:15:23] 2025-11-23 19:14:50,784 | WARNING  | wrong length of table data, x=[1763925149.0], y=[1084.0] (must be same and length>=4)
[2025-11-23 11:15:23] 2025-11-23 19:14:50,785 | INFO     | could have reported an average CPU frequency of 2462 MHz (4 samples)
[2025-11-23 11:15:23] 2025-11-23 19:14:50,785 | INFO     | ..............................
[2025-11-23 11:15:23] 2025-11-23 19:14:50,785 | INFO     | . Timing measurements:
[2025-11-23 11:15:23] 2025-11-23 19:14:50,785 | INFO     | . get job = 0 s
[2025-11-23 11:15:23] 2025-11-23 19:14:50,785 | INFO     | . initial setup = 3 s
[2025-11-23 11:15:23] 2025-11-23 19:14:50,785 | INFO     | . payload setup = 5 s
[2025-11-23 11:15:23] 2025-11-23 19:14:50,785 | INFO     | . stage-in = 0 s
[2025-11-23 11:15:23] 2025-11-23 19:14:50,785 | INFO     | . payload execution = 22 s
[2025-11-23 11:15:23] 2025-11-23 19:14:50,785 | INFO     | . stage-out = 0 s
[2025-11-23 11:15:23] 2025-11-23 19:14:50,785 | INFO     | . log creation = 0 s
[2025-11-23 11:15:23] 2025-11-23 19:14:50,785 | INFO     | ..............................
[2025-11-23 11:15:23] 2025-11-23 19:14:50,785 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-23 11:15:23] 2025-11-23 19:14:50,785 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6894052262/pilotlog.txt
[2025-11-23 11:15:23] [end log extracts]
[2025-11-23 11:15:23] 2025-11-23 19:14:50,799 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-11-23 11:15:23] 2025-11-23 19:14:50,800 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-23 11:15:23] 2025-11-23 19:14:51,038 | INFO     | 
[2025-11-23 11:15:23] 2025-11-23 19:14:51,038 | INFO     | job summary report
[2025-11-23 11:15:23] 2025-11-23 19:14:51,038 | INFO     | --------------------------------------------------
[2025-11-23 11:15:23] 2025-11-23 19:14:51,038 | INFO     | PanDA job id: 6894052262
[2025-11-23 11:15:23] 2025-11-23 19:14:51,038 | INFO     | task id: 47523650
[2025-11-23 11:15:23] 2025-11-23 19:14:51,039 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-23 11:12:42,742 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-23 11:15:23] 2025-11-23 19:14:51,039 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 11:15:23] 2025-11-23 19:14:51,039 | INFO     | pilot state: failed 
[2025-11-23 11:15:23] 2025-11-23 19:14:51,039 | INFO     | transexitcode: 65
[2025-11-23 11:15:23] 2025-11-23 19:14:51,039 | INFO     | exeerrorcode: 65
[2025-11-23 11:15:23] 2025-11-23 19:14:51,039 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-11-23 11:15:23] 2025-11-23 19:14:51,039 | INFO     | exitcode: 65
[2025-11-23 11:15:23] 2025-11-23 19:14:51,039 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-11-23 11:15:23] 2025-11-23 19:14:51,039 | INFO     | cpuconsumptiontime: 18 s
[2025-11-23 11:15:23] 2025-11-23 19:14:51,039 | INFO     | nevents: 0
[2025-11-23 11:15:23] 2025-11-23 19:14:51,039 | INFO     | neventsw: 0
[2025-11-23 11:15:23] 2025-11-23 19:14:51,039 | INFO     | pid: 100213
[2025-11-23 11:15:23] 2025-11-23 19:14:51,039 | INFO     | pgrp: 100213
[2025-11-23 11:15:23] 2025-11-23 19:14:51,039 | INFO     | corecount: 12
[2025-11-23 11:15:23] 2025-11-23 19:14:51,039 | INFO     | event service: False
[2025-11-23 11:15:23] 2025-11-23 19:14:51,039 | INFO     | sizes: {0: 2298403, 1: 2298403, 4: 2298693, 11: 2298721, 31: 2322010, 32: 2326434, 152: 2326572}
[2025-11-23 11:15:23] 2025-11-23 19:14:51,039 | INFO     | --------------------------------------------------
[2025-11-23 11:15:23] 2025-11-23 19:14:51,039 | INFO     | 
[2025-11-23 11:15:23] 2025-11-23 19:14:51,039 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-23 11:15:23] 2025-11-23 19:14:51,058 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 11:15:23] 2025-11-23 19:14:51,059 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 11:15:23] 2025-11-23 19:14:51,059 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 11:15:23] 2025-11-23 19:14:51,059 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 11:15:23] 2025-11-23 19:14:51,059 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 11:15:23] 2025-11-23 19:14:51,059 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 11:15:23] 2025-11-23 19:14:51,060 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 11:15:23] 2025-11-23 19:14:51,060 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 11:15:23] 2025-11-23 19:14:51,060 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 11:15:23] 2025-11-23 19:14:51,060 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 11:15:23] 2025-11-23 19:14:51,060 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 11:15:23] 2025-11-23 19:14:51,060 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 11:15:23] 2025-11-23 19:14:51,060 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 11:15:23] 2025-11-23 19:14:51,060 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 11:15:23] 2025-11-23 19:14:51,060 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 11:15:23] 2025-11-23 19:14:51,060 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 11:15:23] 2025-11-23 19:14:51,060 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 11:15:23] 2025-11-23 19:14:51,061 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 11:15:23] 2025-11-23 19:14:51,061 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 11:15:23] 2025-11-23 19:14:51,061 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 11:15:23] 2025-11-23 19:14:51,061 | INFO     | job 6894052262 has completed (purged errors)
[2025-11-23 11:15:23] 2025-11-23 19:14:51,061 | INFO     | overall cleanup function is called
[2025-11-23 11:15:23] 2025-11-23 19:14:52,066 | INFO     | --- collectZombieJob: --- 10, [100213]
[2025-11-23 11:15:23] 2025-11-23 19:14:52,066 | INFO     | zombie collector waiting for pid 100213
[2025-11-23 11:15:23] 2025-11-23 19:14:52,066 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 11:15:23] 2025-11-23 19:14:52,066 | INFO     | collected zombie processes
[2025-11-23 11:15:23] 2025-11-23 19:14:52,066 | INFO     | will attempt to kill all subprocesses of pid=100213
[2025-11-23 11:15:23] 2025-11-23 19:14:52,200 | INFO     | process IDs to be killed: [100213] (in reverse order)
[2025-11-23 11:15:23] 2025-11-23 19:14:52,264 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 11:15:23] 2025-11-23 19:14:52,264 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 11:15:23] 2025-11-23 19:14:52,271 | INFO     | did not find any defunct processes belonging to 100213
[2025-11-23 11:15:23] 2025-11-23 19:14:52,276 | INFO     | did not find any defunct processes belonging to 100213
[2025-11-23 11:15:23] 2025-11-23 19:14:52,277 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 11:15:23] 2025-11-23 19:14:52,277 | INFO     | ready for new job
[2025-11-23 11:15:23] 2025-11-23 19:14:52,278 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 11:15:23] 2025-11-23 19:14:52,279 | INFO     | ***************************************
[2025-11-23 11:15:23] 2025-11-23 19:14:52,279 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 11:15:23] 2025-11-23 19:14:52,279 | INFO     | ***************************************
[2025-11-23 11:15:23] 2025-11-23 19:14:52,279 | INFO     | 
[2025-11-23 11:15:23] 2025-11-23 19:14:52,281 | INFO     | architecture information:
[2025-11-23 11:15:23] 2025-11-23 19:14:52,281 | INFO     | executing command: cat /etc/os-release
[2025-11-23 11:15:23] 2025-11-23 19:14:52,293 | INFO     | cat /etc/os-release:
[2025-11-23 11:15:23] NAME="CentOS Linux"
[2025-11-23 11:15:23] VERSION="7 (Core)"
[2025-11-23 11:15:23] ID="centos"
[2025-11-23 11:15:23] ID_LIKE="rhel fedora"
[2025-11-23 11:15:23] VERSION_ID="7"
[2025-11-23 11:15:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 11:15:23] ANSI_COLOR="0;31"
[2025-11-23 11:15:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 11:15:23] HOME_URL="https://www.centos.org/"
[2025-11-23 11:15:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 11:15:23] 
[2025-11-23 11:15:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 11:15:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 11:15:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 11:15:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 11:15:23] 
[2025-11-23 11:15:23] 2025-11-23 19:14:52,294 | INFO     | ***************************************
[2025-11-23 11:15:23] 2025-11-23 19:14:52,796 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-23 11:15:23] 2025-11-23 19:14:52,809 | INFO     | sufficient remaining disk space (1928404664320 B)
[2025-11-23 11:15:23] 2025-11-23 19:14:52,809 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 11:15:23] 2025-11-23 19:14:52,809 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 11:15:23] 2025-11-23 19:14:52,809 | INFO     | update_server=False
[2025-11-23 11:15:23] 2025-11-23 19:14:52,809 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 11:15:23] 2025-11-23 19:14:52,810 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 11:15:23] 2025-11-23 19:14:52,810 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 11:15:23] 2025-11-23 19:14:52,810 | INFO     | aborting loop
[2025-11-23 11:15:23] 2025-11-23 19:14:53,738 | INFO     | all data control threads have been joined
[2025-11-23 11:15:23] 2025-11-23 19:14:53,814 | INFO     | [job] retrieve thread has finished
[2025-11-23 11:15:23] 2025-11-23 19:14:53,815 | INFO     | [job] job monitor thread has finished
[2025-11-23 11:15:23] 2025-11-23 19:14:53,815 | INFO     | [job] queue monitor thread has finished
[2025-11-23 11:15:23] 2025-11-23 19:14:53,887 | INFO     | all payload control threads have been joined
[2025-11-23 11:15:23] 2025-11-23 19:14:53,931 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 11:15:23] 2025-11-23 19:14:54,081 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 11:15:23] 2025-11-23 19:14:54,256 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 11:15:23] 2025-11-23 19:14:54,342 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 11:15:23] 2025-11-23 19:14:54,412 | INFO     | all job control threads have been joined
[2025-11-23 11:15:23] 2025-11-23 19:14:54,560 | INFO     | [payload] validate_post thread has finished
[2025-11-23 11:15:23] 2025-11-23 19:14:54,743 | INFO     | [data] control thread has finished
[2025-11-23 11:15:23] 2025-11-23 19:14:54,845 | INFO     | [data] copytool_in thread has finished
[2025-11-23 11:15:23] 2025-11-23 19:14:54,892 | INFO     | [payload] control thread has finished
[2025-11-23 11:15:23] 2025-11-23 19:14:55,061 | INFO     | [payload] failed_post thread has finished
[2025-11-23 11:15:23] 2025-11-23 19:14:55,080 | INFO     | [job] validate thread has finished
[2025-11-23 11:15:23] 2025-11-23 19:14:55,217 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 11:15:23] 2025-11-23 19:14:55,301 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 11:15:23] 2025-11-23 19:14:55,416 | INFO     | [job] control thread has finished
[2025-11-23 11:15:23] 2025-11-23 19:14:56,087 | INFO     | [data] copytool_out thread has finished
[2025-11-23 11:15:23] 2025-11-23 19:14:58,262 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 11:15:23] 2025-11-23 19:15:03,868 | INFO     | [monitor] cgroup control has ended
[2025-11-23 11:15:23] 2025-11-23 19:15:04,648 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139639760570176)>', '<ExcThread(monitor, started 139639201437440)>']
[2025-11-23 11:15:23] 2025-11-23 19:15:09,674 | INFO     | all workflow threads have been joined
[2025-11-23 11:15:23] 2025-11-23 19:15:09,674 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 11:15:23] 2025-11-23 19:15:09,674 | INFO     | traces error code: 0
[2025-11-23 11:15:23] 2025-11-23 19:15:09,674 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 11:15:23] 2025-11-23 19:15:23,553 | INFO     | PID=93679 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-23 11:15:23] 2025-11-23 19:15:23,554 | INFO     | .. there are 14 such processes running
[2025-11-23 11:15:23] 2025-11-23 19:15:23,555 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 11:15:23] 2025-11-23 19:15:23,555 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 11:15:23] 2025-11-23 19:15:23,555 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 11:15:23] 2025-11-23 19:15:23,555 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 11:15:23] 2025-11-23 19:15:23,555 | INFO     | [monitor] control thread has ended
[2025-11-23 11:15:23] 2025-11-23 19:15:23,685 [wrapper] ==== pilot stdout END ====
[2025-11-23 11:15:23] 2025-11-23 19:15:23,688 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 11:15:23] 2025-11-23 19:15:23,690 [wrapper] pilotpid: 93679
[2025-11-23 11:15:23] 2025-11-23 19:15:23,691 [wrapper] Pilot exit status: 0
[2025-11-23 11:15:23] 2025-11-23 19:15:23,722 [wrapper] pandaids: 6894052262
[2025-11-23 11:15:23] 2025-11-23 19:15:23,757 [wrapper] cleanup supervisor_pilot   93685 93680
[2025-11-23 11:15:23] 2025-11-23 19:15:23,760 [wrapper] Test setup, not cleaning
[2025-11-23 11:15:23] 2025-11-23 19:15:23,762 [wrapper] apfmon messages muted
[2025-11-23 11:15:23] 2025-11-23 19:15:23,764 [wrapper] ==== wrapper stdout END ====
[2025-11-23 11:15:23] 2025-11-23 19:15:23,767 [wrapper] ==== wrapper stderr END ====
[2025-11-23 11:15:23]  *** Error codes and diagnostics ***
[2025-11-23 11:15:23]     "exeErrorCode": 65,
[2025-11-23 11:15:23]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-11-23 11:15:23]     "pilotErrorCode": 1305,
[2025-11-23 11:15:23]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-11-23 11:15:23]  *** Listing of results directory ***
[2025-11-23 11:15:23] total 291456
[2025-11-23 11:15:23] -rw-r--r--. 1 boinc boinc    576529 Nov 23 02:16 pilot3.tar.gz
[2025-11-23 11:15:23] -rw-r--r--. 1 boinc boinc      5112 Nov 23 02:18 queuedata.json
[2025-11-23 11:15:23] -rwx------. 1 boinc boinc     36292 Nov 23 02:19 runpilot2-wrapper.sh
[2025-11-23 11:15:23] -rw-r--r--. 1 boinc boinc       100 Nov 23 11:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 11:15:23] -rwxr-xr-x. 1 boinc boinc      7986 Nov 23 11:11 run_atlas
[2025-11-23 11:15:23] -rw-r--r--. 1 boinc boinc       105 Nov 23 11:11 job.xml
[2025-11-23 11:15:23] -rw-r--r--. 2 boinc boinc 294329666 Nov 23 11:11 EVNT.47523648._000005.pool.root.1
[2025-11-23 11:15:23] -rw-r--r--. 1 boinc boinc      6595 Nov 23 11:11 init_data.xml
[2025-11-23 11:15:23] -rw-r--r--. 2 boinc boinc     15847 Nov 23 11:11 start_atlas.sh
[2025-11-23 11:15:23] drwxrwx--x. 2 boinc boinc      4096 Nov 23 11:11 shared
[2025-11-23 11:15:23] -rw-r--r--. 2 boinc boinc    589959 Nov 23 11:11 input.tar.gz
[2025-11-23 11:15:23] -rw-r--r--. 1 boinc boinc         0 Nov 23 11:11 boinc_lockfile
[2025-11-23 11:15:23] -rw-r--r--. 1 boinc boinc      2625 Nov 23 11:11 pandaJob.out
[2025-11-23 11:15:23] -rw-------. 1 boinc boinc    989786 Nov 23 11:12 agis_schedconf.cvmfs.json
[2025-11-23 11:15:23] -rw-------. 1 boinc boinc   1526164 Nov 23 11:12 agis_ddmendpoints.agis.ALL.json
[2025-11-23 11:15:23] drwx------. 5 boinc boinc      4096 Nov 23 11:12 pilot3
[2025-11-23 11:15:23] -rw-r--r--. 1 boinc boinc       522 Nov 23 11:12 boinc_task_state.xml
[2025-11-23 11:15:23] -rw-------. 1 boinc boinc       991 Nov 23 11:12 memory_monitor_summary.json
[2025-11-23 11:15:23] -rw-------. 1 boinc boinc     20774 Nov 23 11:12 log.47523650._000110.job.log.tgz.1
[2025-11-23 11:15:23] -rw-------. 1 boinc boinc      8412 Nov 23 11:14 heartbeat.json
[2025-11-23 11:15:23] -rw-r--r--. 1 boinc boinc      8192 Nov 23 11:15 boinc_mmap_file
[2025-11-23 11:15:23] -rw-r--r--. 1 boinc boinc        22 Nov 23 11:15 wrapper_checkpoint.txt
[2025-11-23 11:15:23] -rw-------. 1 boinc boinc        95 Nov 23 11:15 pilot_heartbeat.json
[2025-11-23 11:15:23] -rw-------. 1 boinc boinc       821 Nov 23 11:15 pilotlog.txt
[2025-11-23 11:15:23] -rw-------. 1 boinc boinc     85971 Nov 23 11:15 log.47523650._000110.job.log.1
[2025-11-23 11:15:23] -rw-------. 1 boinc boinc       188 Nov 23 11:15 output.list
[2025-11-23 11:15:23] -rw-r--r--. 1 boinc boinc       620 Nov 23 11:15 runtime_log
[2025-11-23 11:15:23] -rw-------. 1 boinc boinc    122880 Nov 23 11:15 result.tar.gz
[2025-11-23 11:15:23] -rw-r--r--. 1 boinc boinc      8636 Nov 23 11:15 runtime_log.err
[2025-11-23 11:15:23] -rw-------. 1 boinc boinc       647 Nov 23 11:15 GNCNDm4MMh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmPnKKDmTRLKKn.diag
[2025-11-23 11:15:23] -rw-r--r--. 1 boinc boinc     21740 Nov 23 11:15 stderr.txt
[2025-11-23 11:15:23] No HITS result produced
[2025-11-23 11:15:23]  *** Contents of shared directory: ***
[2025-11-23 11:15:23] total 288152
[2025-11-23 11:15:23] -rw-r--r--. 2 boinc boinc 294329666 Nov 23 11:11 ATLAS.root_0
[2025-11-23 11:15:23] -rw-r--r--. 2 boinc boinc     15847 Nov 23 11:11 start_atlas.sh
[2025-11-23 11:15:23] -rw-r--r--. 2 boinc boinc    589959 Nov 23 11:11 input.tar.gz
[2025-11-23 11:15:23] -rw-------. 1 boinc boinc    122880 Nov 23 11:15 result.tar.gz
11:15:24 (90032): run_atlas exited; CPU time 21.558464
11:15:24 (90032): called boinc_finish(0)

</stderr_txt>
]]>

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