Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
13:31:13 (3444): wrapper (7.7.26015): starting
13:31:13 (3444): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 13:31:13] Arguments: --nthreads 8
[2025-11-23 13:31:13] Threads: 8
[2025-11-23 13:31:13] Checking for CVMFS
[2025-11-23 13:31:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 13:31:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 13:31:13] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 13:31:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 13:31:13] 2.11.2.0 2466 113712 135120 153217 3 81 11200081 18432000 1885 130560 0 79996173 99.972 4930619 28108 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 13:31:13] CVMFS is ok
[2025-11-23 13:31:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 13:31:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 13:31:13] Further information can be found at the LHC@home message board.
[2025-11-23 13:31:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 13:31:13] Checking for apptainer binary...
[2025-11-23 13:31:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 13:31:13] Running /usr/bin/apptainer --version
[2025-11-23 13:31:13] apptainer version 1.3.2-1.el7
[2025-11-23 13:31:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 13:31:14] c-206-20.aglt2.org
[2025-11-23 13:31:14] apptainer works
[2025-11-23 13:31:14] Set ATHENA_PROC_NUMBER=8
[2025-11-23 13:31:14] Set ATHENA_CORE_NUMBER=8
[2025-11-23 13:31:14] Starting ATLAS job with PandaID=6893876887
[2025-11-23 13:31:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 08:29:26]  *** The last 200 lines of the pilot log: ***
[2025-11-24 08:29:26] 2025-11-24 13:28:27,909 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 08:29:26] 2025-11-24 13:28:28,226 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-24 08:29:26] 2025-11-24 13:28:28,230 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2444.6666666666665
[2025-11-24 08:29:26] 2025-11-24 13:28:28,233 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6893876887/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 08:29:26] 2025-11-24 13:28:28,233 | INFO     | extracted standard info from prmon json
[2025-11-24 08:29:26] 2025-11-24 13:28:28,233 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 08:29:26] 2025-11-24 13:28:28,233 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 08:29:26] 2025-11-24 13:28:28,248 | INFO     | fitting pss+swap vs Time
[2025-11-24 08:29:26] 2025-11-24 13:28:28,249 | INFO     | sum of square deviations: 433316449468.2332
[2025-11-24 08:29:26] 2025-11-24 13:28:28,272 | INFO     | sum of deviations: 2096159136797.3237
[2025-11-24 08:29:26] 2025-11-24 13:28:28,272 | INFO     | mean x: 1763956780.088551
[2025-11-24 08:29:26] 2025-11-24 13:28:28,272 | INFO     | mean y: 2872492.7441860465
[2025-11-24 08:29:26] 2025-11-24 13:28:28,272 | INFO     | intersect: -8530231030.179591
[2025-11-24 08:29:26] 2025-11-24 13:28:28,273 | INFO     | chi2: 5.229010321931793
[2025-11-24 08:29:26] 2025-11-24 13:28:28,274 | INFO     | sum of square deviations: 427528904428.9936
[2025-11-24 08:29:26] 2025-11-24 13:28:28,296 | INFO     | sum of deviations: 2423788273295.408
[2025-11-24 08:29:26] 2025-11-24 13:28:28,296 | INFO     | mean x: 1763956627.5911949
[2025-11-24 08:29:26] 2025-11-24 13:28:28,297 | INFO     | mean y: 2881123.429469901
[2025-11-24 08:29:26] 2025-11-24 13:28:28,297 | INFO     | intersect: -9997512637.707085
[2025-11-24 08:29:26] 2025-11-24 13:28:28,298 | INFO     | chi2: 2.7300729690603522
[2025-11-24 08:29:26] 2025-11-24 13:28:28,298 | INFO     | current chi2=2.7300729690603522 (change=47.789872251547585 %)
[2025-11-24 08:29:26] 2025-11-24 13:28:28,299 | INFO     | sum of square deviations: 421793127802.23834
[2025-11-24 08:29:26] 2025-11-24 13:28:28,325 | INFO     | sum of deviations: 2523905809136.8657
[2025-11-24 08:29:26] 2025-11-24 13:28:28,325 | INFO     | mean x: 1763956475.0938628
[2025-11-24 08:29:26] 2025-11-24 13:28:28,325 | INFO     | mean y: 2883782.3185920576
[2025-11-24 08:29:26] 2025-11-24 13:28:28,325 | INFO     | intersect: -10552195713.052843
[2025-11-24 08:29:26] 2025-11-24 13:28:28,327 | INFO     | chi2: 2.369410840294291
[2025-11-24 08:29:26] 2025-11-24 13:28:28,327 | INFO     | current chi2=2.369410840294291 (change=13.210713883966097 %)
[2025-11-24 08:29:26] 2025-11-24 13:28:28,327 | INFO     | right removable region: 1107
[2025-11-24 08:29:26] 2025-11-24 13:28:28,329 | INFO     | sum of square deviations: 427528503048.99396
[2025-11-24 08:29:26] 2025-11-24 13:28:28,359 | INFO     | sum of deviations: 1806686762073.6294
[2025-11-24 08:29:26] 2025-11-24 13:28:28,359 | INFO     | mean x: 1763956932.5911949
[2025-11-24 08:29:26] 2025-11-24 13:28:28,360 | INFO     | mean y: 2880110.8805031446
[2025-11-24 08:29:26] 2025-11-24 13:28:28,360 | INFO     | intersect: -7451400986.759676
[2025-11-24 08:29:26] 2025-11-24 13:28:28,361 | INFO     | chi2: 3.196488143700024
[2025-11-24 08:29:26] 2025-11-24 13:28:28,361 | INFO     | current chi2=3.196488143700024 (change=38.870112183692896 %)
[2025-11-24 08:29:26] 2025-11-24 13:28:28,363 | INFO     | sum of square deviations: 421792393057.4237
[2025-11-24 08:29:26] 2025-11-24 13:28:28,403 | INFO     | sum of deviations: 1733743251073.7551
[2025-11-24 08:29:26] 2025-11-24 13:28:28,404 | INFO     | mean x: 1763957085.0929604
[2025-11-24 08:29:26] 2025-11-24 13:28:28,404 | INFO     | mean y: 2882049.8276173286
[2025-11-24 08:29:26] 2025-11-24 13:28:28,404 | INFO     | intersect: -7247719767.088737
[2025-11-24 08:29:26] 2025-11-24 13:28:28,406 | INFO     | chi2: 3.146089862895415
[2025-11-24 08:29:26] 2025-11-24 13:28:28,406 | INFO     | current chi2=3.146089862895415 (change=1.5766766069174727 %)
[2025-11-24 08:29:26] 2025-11-24 13:28:28,406 | INFO     | left removable region: 20
[2025-11-24 08:29:26] 2025-11-24 13:28:28,408 | INFO     | sum of square deviations: 398261658545.1187
[2025-11-24 08:29:26] 2025-11-24 13:28:28,446 | INFO     | sum of deviations: 2071471153505.6956
[2025-11-24 08:29:26] 2025-11-24 13:28:28,447 | INFO     | mean x: 1763957054.598896
[2025-11-24 08:29:26] 2025-11-24 13:28:28,447 | INFO     | mean y: 2896430.4121435145
[2025-11-24 08:29:26] 2025-11-24 13:28:28,447 | INFO     | intersect: -9171941458.760477
[2025-11-24 08:29:26] 2025-11-24 13:28:28,449 | INFO     | chi2: 0.23813054486165147
[2025-11-24 08:29:26] 2025-11-24 13:28:28,449 | INFO     | current memory leak: 5.20 B/s (using 1087 data points, chi2=0.24)
[2025-11-24 08:29:26] 2025-11-24 13:28:28,450 | INFO     | could have reported an average CPU frequency of 2633 MHz (41 samples)
[2025-11-24 08:29:26] 2025-11-24 13:28:28,450 | INFO     | ..............................
[2025-11-24 08:29:26] 2025-11-24 13:28:28,450 | INFO     | . Timing measurements:
[2025-11-24 08:29:26] 2025-11-24 13:28:28,451 | INFO     | . get job = 0 s
[2025-11-24 08:29:26] 2025-11-24 13:28:28,451 | INFO     | . initial setup = 2 s
[2025-11-24 08:29:26] 2025-11-24 13:28:28,451 | INFO     | . payload setup = 5 s
[2025-11-24 08:29:26] 2025-11-24 13:28:28,451 | INFO     | . stage-in = 0 s
[2025-11-24 08:29:26] 2025-11-24 13:28:28,451 | INFO     | . payload execution = 68184 s
[2025-11-24 08:29:26] 2025-11-24 13:28:28,452 | INFO     | . stage-out = 4 s
[2025-11-24 08:29:26] 2025-11-24 13:28:28,452 | INFO     | . log creation = 0 s
[2025-11-24 08:29:26] 2025-11-24 13:28:28,452 | INFO     | ..............................
[2025-11-24 08:29:26] 2025-11-24 13:28:28,575 | INFO     | 
[2025-11-24 08:29:26] 2025-11-24 13:28:28,576 | INFO     | job summary report
[2025-11-24 08:29:26] 2025-11-24 13:28:28,576 | INFO     | --------------------------------------------------
[2025-11-24 08:29:26] 2025-11-24 13:28:28,576 | INFO     | PanDA job id: 6893876887
[2025-11-24 08:29:26] 2025-11-24 13:28:28,576 | INFO     | task id: 47523449
[2025-11-24 08:29:26] 2025-11-24 13:28:28,576 | INFO     | errors: (none)
[2025-11-24 08:29:26] 2025-11-24 13:28:28,577 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 08:29:26] 2025-11-24 13:28:28,577 | INFO     | pilot state: finished 
[2025-11-24 08:29:26] 2025-11-24 13:28:28,577 | INFO     | transexitcode: 0
[2025-11-24 08:29:26] 2025-11-24 13:28:28,577 | INFO     | exeerrorcode: 0
[2025-11-24 08:29:26] 2025-11-24 13:28:28,577 | INFO     | exeerrordiag: 
[2025-11-24 08:29:26] 2025-11-24 13:28:28,577 | INFO     | exitcode: 0
[2025-11-24 08:29:26] 2025-11-24 13:28:28,578 | INFO     | exitmsg: OK
[2025-11-24 08:29:26] 2025-11-24 13:28:28,578 | INFO     | cpuconsumptiontime: 532675 s
[2025-11-24 08:29:26] 2025-11-24 13:28:28,578 | INFO     | nevents: 1000
[2025-11-24 08:29:26] 2025-11-24 13:28:28,578 | INFO     | neventsw: 0
[2025-11-24 08:29:26] 2025-11-24 13:28:28,578 | INFO     | pid: 13550
[2025-11-24 08:29:26] 2025-11-24 13:28:28,578 | INFO     | pgrp: 13550
[2025-11-24 08:29:26] 2025-11-24 13:28:28,579 | INFO     | corecount: 8
[2025-11-24 08:29:26] 2025-11-24 13:28:28,579 | INFO     | event service: False
[2025-11-24 08:29:26] 2025-11-24 13:28:28,579 | INFO     | sizes: {0: 2298585, 1: 2298784, 2: 2298784, 4: 2299074, 12: 2299102, 68193: 2355096, 68199: 2364881, 68202: 2364937, 68208: 2365279}
[2025-11-24 08:29:26] 2025-11-24 13:28:28,579 | INFO     | --------------------------------------------------
[2025-11-24 08:29:26] 2025-11-24 13:28:28,579 | INFO     | 
[2025-11-24 08:29:26] 2025-11-24 13:28:28,579 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-24 08:29:26] 2025-11-24 13:28:28,597 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 08:29:26] 2025-11-24 13:28:28,597 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 08:29:26] 2025-11-24 13:28:28,597 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 08:29:26] 2025-11-24 13:28:28,597 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 08:29:26] 2025-11-24 13:28:28,598 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 08:29:26] 2025-11-24 13:28:28,598 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 08:29:26] 2025-11-24 13:28:28,598 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 08:29:26] 2025-11-24 13:28:28,598 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 08:29:26] 2025-11-24 13:28:28,598 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 08:29:26] 2025-11-24 13:28:28,599 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 08:29:26] 2025-11-24 13:28:28,599 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 08:29:26] 2025-11-24 13:28:28,599 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 08:29:26] 2025-11-24 13:28:28,599 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 08:29:26] 2025-11-24 13:28:28,599 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 08:29:26] 2025-11-24 13:28:28,600 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 08:29:26] 2025-11-24 13:28:28,600 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 08:29:26] 2025-11-24 13:28:28,600 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 08:29:26] 2025-11-24 13:28:28,600 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 08:29:26] 2025-11-24 13:28:28,600 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 08:29:26] 2025-11-24 13:28:28,600 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 08:29:26] 2025-11-24 13:28:28,601 | INFO     | job 6893876887 has completed (purged errors)
[2025-11-24 08:29:26] 2025-11-24 13:28:28,601 | INFO     | overall cleanup function is called
[2025-11-24 08:29:26] 2025-11-24 13:28:29,617 | INFO     | --- collectZombieJob: --- 10, [13550]
[2025-11-24 08:29:26] 2025-11-24 13:28:29,617 | INFO     | zombie collector waiting for pid 13550
[2025-11-24 08:29:26] 2025-11-24 13:28:29,617 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 08:29:26] 2025-11-24 13:28:29,617 | INFO     | collected zombie processes
[2025-11-24 08:29:26] 2025-11-24 13:28:29,617 | INFO     | will attempt to kill all subprocesses of pid=13550
[2025-11-24 08:29:26] 2025-11-24 13:28:29,729 | INFO     | process IDs to be killed: [13550] (in reverse order)
[2025-11-24 08:29:26] 2025-11-24 13:28:29,785 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 08:29:26] 2025-11-24 13:28:29,786 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 08:29:26] 2025-11-24 13:28:29,788 | INFO     | did not find any defunct processes belonging to 13550
[2025-11-24 08:29:26] 2025-11-24 13:28:29,791 | INFO     | did not find any defunct processes belonging to 13550
[2025-11-24 08:29:26] 2025-11-24 13:28:29,792 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 08:29:26] 2025-11-24 13:28:29,792 | INFO     | ready for new job
[2025-11-24 08:29:26] 2025-11-24 13:28:29,792 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 08:29:26] 2025-11-24 13:28:29,796 | INFO     | ***************************************
[2025-11-24 08:29:26] 2025-11-24 13:28:29,796 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 08:29:26] 2025-11-24 13:28:29,796 | INFO     | ***************************************
[2025-11-24 08:29:26] 2025-11-24 13:28:29,796 | INFO     | 
[2025-11-24 08:29:26] 2025-11-24 13:28:29,797 | INFO     | architecture information:
[2025-11-24 08:29:26] 2025-11-24 13:28:29,797 | INFO     | executing command: cat /etc/os-release
[2025-11-24 08:29:26] 2025-11-24 13:28:29,810 | INFO     | cat /etc/os-release:
[2025-11-24 08:29:26] NAME="CentOS Linux"
[2025-11-24 08:29:26] VERSION="7 (Core)"
[2025-11-24 08:29:26] ID="centos"
[2025-11-24 08:29:26] ID_LIKE="rhel fedora"
[2025-11-24 08:29:26] VERSION_ID="7"
[2025-11-24 08:29:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 08:29:26] ANSI_COLOR="0;31"
[2025-11-24 08:29:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 08:29:26] HOME_URL="https://www.centos.org/"
[2025-11-24 08:29:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 08:29:26] 
[2025-11-24 08:29:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 08:29:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 08:29:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 08:29:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 08:29:26] 
[2025-11-24 08:29:26] 2025-11-24 13:28:29,810 | INFO     | ***************************************
[2025-11-24 08:29:26] 2025-11-24 13:28:30,313 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-24 08:29:26] 2025-11-24 13:28:30,333 | INFO     | sufficient remaining disk space (24792530944 B)
[2025-11-24 08:29:26] 2025-11-24 13:28:30,333 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 08:29:26] 2025-11-24 13:28:30,334 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 08:29:26] 2025-11-24 13:28:30,334 | INFO     | update_server=False
[2025-11-24 08:29:26] 2025-11-24 13:28:30,334 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 08:29:26] 2025-11-24 13:28:30,334 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 08:29:26] 2025-11-24 13:28:30,346 | INFO     | all data control threads have been joined
[2025-11-24 08:29:26] 2025-11-24 13:28:30,396 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 08:29:26] 2025-11-24 13:28:30,412 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-24 08:29:26] 2025-11-24 13:28:30,412 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-24 08:29:26] 2025-11-24 13:28:30,412 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 08:29:26] 2025-11-24 13:28:30,412 | INFO     | will abort loop
[2025-11-24 08:29:26] 2025-11-24 13:28:30,538 | INFO     | all payload control threads have been joined
[2025-11-24 08:29:26] 2025-11-24 13:28:31,340 | INFO     | [job] queue monitor thread has finished
[2025-11-24 08:29:26] 2025-11-24 13:28:31,341 | INFO     | [job] retrieve thread has finished
[2025-11-24 08:29:26] 2025-11-24 13:28:31,344 | INFO     | all job control threads have been joined
[2025-11-24 08:29:26] 2025-11-24 13:28:31,352 | INFO     | [data] control thread has finished
[2025-11-24 08:29:26] 2025-11-24 13:28:31,413 | INFO     | [job] job monitor thread has finished
[2025-11-24 08:29:26] 2025-11-24 13:28:31,438 | INFO     | [payload] validate_post thread has finished
[2025-11-24 08:29:26] 2025-11-24 13:28:31,544 | INFO     | [payload] control thread has finished
[2025-11-24 08:29:26] 2025-11-24 13:28:31,666 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 08:29:26] 2025-11-24 13:28:31,790 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 08:29:26] 2025-11-24 13:28:31,990 | INFO     | [payload] failed_post thread has finished
[2025-11-24 08:29:26] 2025-11-24 13:28:32,351 | INFO     | [job] control thread has finished
[2025-11-24 08:29:26] 2025-11-24 13:28:32,401 | INFO     | [data] copytool_out thread has finished
[2025-11-24 08:29:26] 2025-11-24 13:28:32,472 | INFO     | [job] validate thread has finished
[2025-11-24 08:29:26] 2025-11-24 13:28:32,734 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 08:29:26] 2025-11-24 13:28:32,757 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 08:29:26] 2025-11-24 13:28:32,774 | INFO     | [data] copytool_in thread has finished
[2025-11-24 08:29:26] 2025-11-24 13:28:33,446 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 08:29:26] 2025-11-24 13:28:37,452 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 08:29:26] 2025-11-24 13:29:00,235 | INFO     | PID=7132 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-24 08:29:26] 2025-11-24 13:29:00,235 | INFO     | .. there are 3 such processes running
[2025-11-24 08:29:26] 2025-11-24 13:29:00,236 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 08:29:26] 2025-11-24 13:29:00,236 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 08:29:26] 2025-11-24 13:29:00,236 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 08:29:26] 2025-11-24 13:29:18,919 | INFO     | [monitor] cgroup control has ended
[2025-11-24 08:29:26] 2025-11-24 13:29:20,752 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139970151352128)>', '<ExcThread(monitor, started 139969863595776)>']
[2025-11-24 08:29:26] 2025-11-24 13:29:21,348 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 08:29:26] 2025-11-24 13:29:21,348 | INFO     | [monitor] control thread has ended
[2025-11-24 08:29:26] 2025-11-24 13:29:25,778 | INFO     | all workflow threads have been joined
[2025-11-24 08:29:26] 2025-11-24 13:29:25,778 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 08:29:26] 2025-11-24 13:29:25,779 | INFO     | traces error code: 0
[2025-11-24 08:29:26] 2025-11-24 13:29:25,779 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 08:29:26] 2025-11-24 13:29:25,921 [wrapper] ==== pilot stdout END ====
[2025-11-24 08:29:26] 2025-11-24 13:29:25,924 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 08:29:26] 2025-11-24 13:29:25,927 [wrapper] pilotpid: 7132
[2025-11-24 08:29:26] 2025-11-24 13:29:25,929 [wrapper] Pilot exit status: 0
[2025-11-24 08:29:26] 2025-11-24 13:29:25,938 [wrapper] pandaids: 6893876887
[2025-11-24 08:29:26] 2025-11-24 13:29:25,982 [wrapper] cleanup supervisor_pilot 21234 7133
[2025-11-24 08:29:26] 2025-11-24 13:29:25,985 [wrapper] Test setup, not cleaning
[2025-11-24 08:29:26] 2025-11-24 13:29:25,987 [wrapper] apfmon messages muted
[2025-11-24 08:29:26] 2025-11-24 13:29:25,989 [wrapper] ==== wrapper stdout END ====
[2025-11-24 08:29:26] 2025-11-24 13:29:25,991 [wrapper] ==== wrapper stderr END ====
[2025-11-24 08:29:26]  *** Error codes and diagnostics ***
[2025-11-24 08:29:26]     "exeErrorCode": 0,
[2025-11-24 08:29:26]     "exeErrorDiag": "",
[2025-11-24 08:29:26]     "pilotErrorCode": 0,
[2025-11-24 08:29:26]     "pilotErrorDiag": "",
[2025-11-24 08:29:26]  *** Listing of results directory ***
[2025-11-24 08:29:26] total 1324028
[2025-11-24 08:29:26] -rw-r--r-- 1 boincer umatlas    576529 Nov 20 12:52 pilot3.tar.gz
[2025-11-24 08:29:26] -rwx------ 1 boincer umatlas     36292 Nov 20 13:01 runpilot2-wrapper.sh
[2025-11-24 08:29:26] -rw-r--r-- 1 boincer umatlas      5112 Nov 20 13:01 queuedata.json
[2025-11-24 08:29:26] -rw-r--r-- 1 boincer umatlas       100 Nov 23 13:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 08:29:26] -rwxr-xr-x 1 boincer umatlas      7986 Nov 23 13:31 run_atlas
[2025-11-24 08:29:26] -rw-r--r-- 1 boincer umatlas       105 Nov 23 13:31 job.xml
[2025-11-24 08:29:26] -rw-r--r-- 2 boincer umatlas 411067994 Nov 23 13:31 EVNT.47493127._000781.pool.root.1
[2025-11-24 08:29:26] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 13:31 start_atlas.sh
[2025-11-24 08:29:26] drwxrwx--x 2 boincer umatlas      4096 Nov 23 13:31 shared
[2025-11-24 08:29:26] -rw-r--r-- 2 boincer umatlas    590099 Nov 23 13:31 input.tar.gz
[2025-11-24 08:29:26] -rw-r--r-- 1 boincer umatlas         0 Nov 23 13:31 boinc_lockfile
[2025-11-24 08:29:26] -rw-r--r-- 1 boincer umatlas      2785 Nov 23 13:31 pandaJob.out
[2025-11-24 08:29:26] -rw------- 1 boincer umatlas        57 Nov 23 13:31 setup.sh.local
[2025-11-24 08:29:26] -rw------- 1 boincer umatlas    989786 Nov 23 13:31 agis_schedconf.cvmfs.json
[2025-11-24 08:29:26] drwx------ 5 boincer umatlas      4096 Nov 23 13:31 pilot3
[2025-11-24 08:29:26] -rw-r--r-- 1 boincer umatlas       533 Nov 24 08:12 boinc_task_state.xml
[2025-11-24 08:29:26] -rw-r--r-- 1 boincer umatlas      5954 Nov 24 08:18 init_data.xml
[2025-11-24 08:29:26] -rw------- 1 boincer umatlas 917348278 Nov 24 08:27 HITS.47523449._007805.pool.root.1
[2025-11-24 08:29:26] -rw------- 1 boincer umatlas      1068 Nov 24 08:28 memory_monitor_summary.json
[2025-11-24 08:29:26] -rw------- 1 boincer umatlas   1516227 Nov 24 08:28 agis_ddmendpoints.agis.ALL.json
[2025-11-24 08:29:26] -rw------- 1 boincer umatlas   2294818 Nov 24 08:28 log.47523449._007805.job.log.tgz.1
[2025-11-24 08:29:26] -rw------- 1 boincer umatlas      8665 Nov 24 08:28 heartbeat.json
[2025-11-24 08:29:26] -rw------- 1 boincer umatlas        95 Nov 24 08:29 pilot_heartbeat.json
[2025-11-24 08:29:26] -rw-r--r-- 1 boincer umatlas        29 Nov 24 08:29 wrapper_checkpoint.txt
[2025-11-24 08:29:26] -rw-r--r-- 1 boincer umatlas      8192 Nov 24 08:29 boinc_mmap_file
[2025-11-24 08:29:26] -rw------- 1 boincer umatlas      5006 Nov 24 08:29 pilotlog.txt
[2025-11-24 08:29:26] -rw------- 1 boincer umatlas   9442405 Nov 24 08:29 log.47523449._007805.job.log.1
[2025-11-24 08:29:26] -rw------- 1 boincer umatlas       353 Nov 24 08:29 output.list
[2025-11-24 08:29:26] -rw-r--r-- 1 boincer umatlas       620 Nov 24 08:29 runtime_log
[2025-11-24 08:29:26] -rw------- 1 boincer umatlas  11755520 Nov 24 08:29 result.tar.gz
[2025-11-24 08:29:26] -rw-r--r-- 1 boincer umatlas      9343 Nov 24 08:29 runtime_log.err
[2025-11-24 08:29:26] -rw------- 1 boincer umatlas       668 Nov 24 08:29 khoMDmd9Ng8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmSwGKDm74bWBo.diag
[2025-11-24 08:29:26] -rw-r--r-- 1 boincer umatlas     21311 Nov 24 08:29 stderr.txt
[2025-11-24 08:29:26] HITS file was successfully produced:
[2025-11-24 08:29:26] -rw------- 1 boincer umatlas 917348278 Nov 24 08:27 shared/HITS.pool.root.1
[2025-11-24 08:29:26]  *** Contents of shared directory: ***
[2025-11-24 08:29:26] total 1309364
[2025-11-24 08:29:26] -rw-r--r-- 2 boincer umatlas 411067994 Nov 23 13:31 ATLAS.root_0
[2025-11-24 08:29:26] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 13:31 start_atlas.sh
[2025-11-24 08:29:26] -rw-r--r-- 2 boincer umatlas    590099 Nov 23 13:31 input.tar.gz
[2025-11-24 08:29:26] -rw------- 1 boincer umatlas 917348278 Nov 24 08:27 HITS.pool.root.1
[2025-11-24 08:29:26] -rw------- 1 boincer umatlas  11755520 Nov 24 08:29 result.tar.gz
08:29:28 (3444): run_atlas exited; CPU time 532241.755226
08:29:28 (3444): called boinc_finish(0)

</stderr_txt>
]]>

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