Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
10:40:56 (3626817): wrapper (7.7.26015): starting
10:40:56 (3626817): wrapper: running run_atlas (--nthreads 10)
[2025-11-23 10:40:56] Arguments: --nthreads 10
[2025-11-23 10:40:56] Threads: 10
[2025-11-23 10:40:56] Checking for CVMFS
[2025-11-23 10:40:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 10:40:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 10:40:57] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 10:40:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 10:40:58] 2.13.3.0 7351 7385 50980 153217 2 72 2630503 4096001 10391 130560 0 22444918 99.975 558357 727 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-23 10:40:58] CVMFS is ok
[2025-11-23 10:40:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 10:40:58] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-23 10:40:58] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-23 10:40:58] Further information can be found at the LHC@home message board.
[2025-11-23 10:40:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 10:40:58] Checking for apptainer binary...
[2025-11-23 10:40:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 10:40:58] Running /usr/bin/apptainer --version
[2025-11-23 10:40:58] apptainer version 1.4.2
[2025-11-23 10:40:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 10:40:59] 3950x-linux
[2025-11-23 10:40:59] apptainer works
[2025-11-23 10:40:59] Set ATHENA_PROC_NUMBER=10
[2025-11-23 10:40:59] Set ATHENA_CORE_NUMBER=10
[2025-11-23 10:40:59] Starting ATLAS job with PandaID=6895339080
[2025-11-23 10:40:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/multiboinc/boinc224/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 05:20:55]  *** The last 200 lines of the pilot log: ***
[2025-11-24 05:20:55] 2025-11-24 13:20:09,699 | INFO     | time since job start (67115s) is within the limit (172800.0s)
[2025-11-24 05:20:55] 2025-11-24 13:20:11,369 | INFO     | monitor loop #4435: job 0:6895339080 is in state 'finished'
[2025-11-24 05:20:55] 2025-11-24 13:20:11,370 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 05:20:55] 2025-11-24 13:20:11,704 | INFO     | time since job start (67117s) is within the limit (172800.0s)
[2025-11-24 05:20:55] 2025-11-24 13:20:13,517 | INFO     | PID=3637686 has CPU usage=12.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-24 05:20:55] 2025-11-24 13:20:13,518 | INFO     | .. there are 12 such processes running
[2025-11-24 05:20:55] 2025-11-24 13:20:13,875 | INFO     | monitor loop #4436: job 0:6895339080 is in state 'finished'
[2025-11-24 05:20:55] 2025-11-24 13:20:13,875 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 05:20:55] 2025-11-24 13:20:14,518 | INFO     | time since job start (67120s) is within the limit (172800.0s)
[2025-11-24 05:20:55] 2025-11-24 13:20:16,379 | INFO     | monitor loop #4437: job 0:6895339080 is in state 'finished'
[2025-11-24 05:20:55] 2025-11-24 13:20:16,379 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 05:20:55] 2025-11-24 13:20:16,525 | INFO     | time since job start (67122s) is within the limit (172800.0s)
[2025-11-24 05:20:55] 2025-11-24 13:20:18,532 | INFO     | time since job start (67124s) is within the limit (172800.0s)
[2025-11-24 05:20:55] 2025-11-24 13:20:18,882 | INFO     | monitor loop #4438: job 0:6895339080 is in state 'finished'
[2025-11-24 05:20:55] 2025-11-24 13:20:18,882 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 05:20:55] 2025-11-24 13:20:20,539 | INFO     | time since job start (67126s) is within the limit (172800.0s)
[2025-11-24 05:20:55] 2025-11-24 13:20:20,707 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 05:20:55] 2025-11-24 13:20:20,718 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3249.784999999999
[2025-11-24 05:20:55] 2025-11-24 13:20:20,726 | INFO     | using path: /var/lib/multiboinc/boinc224/slots/1/PanDA_Pilot-6895339080/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 05:20:55] 2025-11-24 13:20:20,727 | INFO     | extracted standard info from prmon json
[2025-11-24 05:20:55] 2025-11-24 13:20:20,727 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 05:20:55] 2025-11-24 13:20:20,727 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 05:20:55] 2025-11-24 13:20:20,756 | INFO     | fitting pss+swap vs Time
[2025-11-24 05:20:55] 2025-11-24 13:20:20,758 | INFO     | sum of square deviations: 411602468897.254
[2025-11-24 05:20:55] 2025-11-24 13:20:20,805 | INFO     | sum of deviations: 2046112985372.4258
[2025-11-24 05:20:55] 2025-11-24 13:20:20,805 | INFO     | mean x: 1763956867.190173
[2025-11-24 05:20:55] 2025-11-24 13:20:20,805 | INFO     | mean y: 3130185.409463148
[2025-11-24 05:20:55] 2025-11-24 13:20:20,805 | INFO     | intersect: -8765658450.053349
[2025-11-24 05:20:55] 2025-11-24 13:20:20,809 | INFO     | chi2: 14.00904353240704
[2025-11-24 05:20:55] 2025-11-24 13:20:20,810 | INFO     | sum of square deviations: 406011275183.6354
[2025-11-24 05:20:55] 2025-11-24 13:20:20,872 | INFO     | sum of deviations: 2459689776989.1123
[2025-11-24 05:20:55] 2025-11-24 13:20:20,872 | INFO     | mean x: 1763956714.7047532
[2025-11-24 05:20:55] 2025-11-24 13:20:20,872 | INFO     | mean y: 3141462.8053016453
[2025-11-24 05:20:55] 2025-11-24 13:20:20,872 | INFO     | intersect: -10683227521.031876
[2025-11-24 05:20:55] 2025-11-24 13:20:20,876 | INFO     | chi2: 10.605869585901026
[2025-11-24 05:20:55] 2025-11-24 13:20:20,876 | INFO     | current chi2=10.605869585901026 (change=24.292693063830313 %)
[2025-11-24 05:20:55] 2025-11-24 13:20:20,877 | INFO     | right removable region: 1093
[2025-11-24 05:20:55] 2025-11-24 13:20:20,878 | INFO     | sum of square deviations: 406009136523.6358
[2025-11-24 05:20:55] 2025-11-24 13:20:20,937 | INFO     | sum of deviations: 1616202785718.0642
[2025-11-24 05:20:55] 2025-11-24 13:20:20,938 | INFO     | mean x: 1763957019.7047532
[2025-11-24 05:20:55] 2025-11-24 13:20:20,938 | INFO     | mean y: 3141904.5265082265
[2025-11-24 05:20:55] 2025-11-24 13:20:20,938 | INFO     | intersect: -7018651431.318265
[2025-11-24 05:20:55] 2025-11-24 13:20:20,939 | INFO     | chi2: 10.72414396661406
[2025-11-24 05:20:55] 2025-11-24 13:20:20,939 | INFO     | current chi2=10.72414396661406 (change=23.44842143001441 %)
[2025-11-24 05:20:55] 2025-11-24 13:20:20,939 | INFO     | left removable region: 10
[2025-11-24 05:20:55] 2025-11-24 13:20:20,946 | INFO     | sum of square deviations: 393885952525.57574
[2025-11-24 05:20:55] 2025-11-24 13:20:21,017 | INFO     | sum of deviations: 1877001897676.7737
[2025-11-24 05:20:55] 2025-11-24 13:20:21,017 | INFO     | mean x: 1763956989.2262235
[2025-11-24 05:20:55] 2025-11-24 13:20:21,017 | INFO     | mean y: 3161907.564173592
[2025-11-24 05:20:55] 2025-11-24 13:20:21,017 | INFO     | intersect: -8402699217.891535
[2025-11-24 05:20:55] 2025-11-24 13:20:21,018 | INFO     | chi2: 5.679893138487761
[2025-11-24 05:20:55] 2025-11-24 13:20:21,018 | INFO     | current memory leak: 4.77 B/s (using 1083 data points, chi2=5.68)
[2025-11-24 05:20:55] 2025-11-24 13:20:21,022 | INFO     | could have reported an average CPU frequency of 3249 MHz (40 samples)
[2025-11-24 05:20:55] 2025-11-24 13:20:21,023 | INFO     | ..............................
[2025-11-24 05:20:55] 2025-11-24 13:20:21,023 | INFO     | . Timing measurements:
[2025-11-24 05:20:55] 2025-11-24 13:20:21,023 | INFO     | . get job = 0 s
[2025-11-24 05:20:55] 2025-11-24 13:20:21,023 | INFO     | . initial setup = 4 s
[2025-11-24 05:20:55] 2025-11-24 13:20:21,023 | INFO     | . payload setup = 21 s
[2025-11-24 05:20:55] 2025-11-24 13:20:21,023 | INFO     | . stage-in = 0 s
[2025-11-24 05:20:55] 2025-11-24 13:20:21,023 | INFO     | . payload execution = 67028 s
[2025-11-24 05:20:55] 2025-11-24 13:20:21,023 | INFO     | . stage-out = 8 s
[2025-11-24 05:20:55] 2025-11-24 13:20:21,023 | INFO     | . log creation = 2 s
[2025-11-24 05:20:55] 2025-11-24 13:20:21,023 | INFO     | ..............................
[2025-11-24 05:20:55] 2025-11-24 13:20:21,608 | INFO     | 
[2025-11-24 05:20:55] 2025-11-24 13:20:21,608 | INFO     | job summary report
[2025-11-24 05:20:55] 2025-11-24 13:20:21,609 | INFO     | --------------------------------------------------
[2025-11-24 05:20:55] 2025-11-24 13:20:21,609 | INFO     | PanDA job id: 6895339080
[2025-11-24 05:20:55] 2025-11-24 13:20:21,609 | INFO     | task id: 47556149
[2025-11-24 05:20:55] 2025-11-24 13:20:21,609 | INFO     | errors: (none)
[2025-11-24 05:20:55] 2025-11-24 13:20:21,609 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 05:20:55] 2025-11-24 13:20:21,609 | INFO     | pilot state: finished 
[2025-11-24 05:20:55] 2025-11-24 13:20:21,609 | INFO     | transexitcode: 0
[2025-11-24 05:20:55] 2025-11-24 13:20:21,609 | INFO     | exeerrorcode: 0
[2025-11-24 05:20:55] 2025-11-24 13:20:21,609 | INFO     | exeerrordiag: 
[2025-11-24 05:20:55] 2025-11-24 13:20:21,609 | INFO     | exitcode: 0
[2025-11-24 05:20:55] 2025-11-24 13:20:21,609 | INFO     | exitmsg: OK
[2025-11-24 05:20:55] 2025-11-24 13:20:21,609 | INFO     | cpuconsumptiontime: 211925 s
[2025-11-24 05:20:55] 2025-11-24 13:20:21,609 | INFO     | nevents: 1000
[2025-11-24 05:20:55] 2025-11-24 13:20:21,610 | INFO     | neventsw: 0
[2025-11-24 05:20:55] 2025-11-24 13:20:21,610 | INFO     | pid: 3659281
[2025-11-24 05:20:55] 2025-11-24 13:20:21,610 | INFO     | pgrp: 3659281
[2025-11-24 05:20:55] 2025-11-24 13:20:21,610 | INFO     | corecount: 10
[2025-11-24 05:20:55] 2025-11-24 13:20:21,610 | INFO     | event service: False
[2025-11-24 05:20:55] 2025-11-24 13:20:21,610 | INFO     | sizes: {0: 2298641, 1: 2298840, 12: 2298840, 18: 2299130, 23: 2299158, 67054: 2357848, 67064: 2367661, 67066: 2367717, 67084: 2367963}
[2025-11-24 05:20:55] 2025-11-24 13:20:21,610 | INFO     | --------------------------------------------------
[2025-11-24 05:20:55] 2025-11-24 13:20:21,610 | INFO     | 
[2025-11-24 05:20:55] 2025-11-24 13:20:21,610 | INFO     | executing command: ls -lF /var/lib/multiboinc/boinc224/slots/1
[2025-11-24 05:20:55] 2025-11-24 13:20:21,680 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 05:20:55] 2025-11-24 13:20:21,680 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 05:20:55] 2025-11-24 13:20:21,680 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 05:20:55] 2025-11-24 13:20:21,680 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 05:20:55] 2025-11-24 13:20:21,680 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 05:20:55] 2025-11-24 13:20:21,680 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 05:20:55] 2025-11-24 13:20:21,680 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 05:20:55] 2025-11-24 13:20:21,680 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 05:20:55] 2025-11-24 13:20:21,680 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 05:20:55] 2025-11-24 13:20:21,680 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 05:20:55] 2025-11-24 13:20:21,680 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 05:20:55] 2025-11-24 13:20:21,681 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 05:20:55] 2025-11-24 13:20:21,681 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 05:20:55] 2025-11-24 13:20:21,681 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 05:20:55] 2025-11-24 13:20:21,681 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 05:20:55] 2025-11-24 13:20:21,681 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 05:20:55] 2025-11-24 13:20:21,681 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 05:20:55] 2025-11-24 13:20:21,681 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 05:20:55] 2025-11-24 13:20:21,681 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 05:20:55] 2025-11-24 13:20:21,681 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 05:20:55] 2025-11-24 13:20:21,681 | INFO     | job 6895339080 has completed (purged errors)
[2025-11-24 05:20:55] 2025-11-24 13:20:21,681 | INFO     | overall cleanup function is called
[2025-11-24 05:20:55] 2025-11-24 13:20:22,736 | INFO     | --- collectZombieJob: --- 10, [3659281]
[2025-11-24 05:20:55] 2025-11-24 13:20:22,736 | INFO     | zombie collector waiting for pid 3659281
[2025-11-24 05:20:55] 2025-11-24 13:20:22,737 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 05:20:55] 2025-11-24 13:20:22,737 | INFO     | collected zombie processes
[2025-11-24 05:20:55] 2025-11-24 13:20:22,737 | INFO     | will attempt to kill all subprocesses of pid=3659281
[2025-11-24 05:20:55] 2025-11-24 13:20:23,743 | INFO     | process IDs to be killed: [3659281] (in reverse order)
[2025-11-24 05:20:55] 2025-11-24 13:20:23,918 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 05:20:55] 2025-11-24 13:20:23,918 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 05:20:55] 2025-11-24 13:20:23,937 | INFO     | did not find any defunct processes belonging to 3659281
[2025-11-24 05:20:55] 2025-11-24 13:20:23,964 | INFO     | did not find any defunct processes belonging to 3659281
[2025-11-24 05:20:55] 2025-11-24 13:20:23,979 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 05:20:55] 2025-11-24 13:20:23,979 | INFO     | ready for new job
[2025-11-24 05:20:55] 2025-11-24 13:20:23,980 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 05:20:55] 2025-11-24 13:20:23,990 | INFO     | ***************************************
[2025-11-24 05:20:55] 2025-11-24 13:20:23,999 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 05:20:55] 2025-11-24 13:20:23,999 | INFO     | ***************************************
[2025-11-24 05:20:55] 2025-11-24 13:20:24,000 | INFO     | 
[2025-11-24 05:20:55] 2025-11-24 13:20:24,001 | INFO     | architecture information:
[2025-11-24 05:20:55] 2025-11-24 13:20:24,011 | INFO     | executing command: cat /etc/os-release
[2025-11-24 05:20:55] 2025-11-24 13:20:24,092 | INFO     | cat /etc/os-release:
[2025-11-24 05:20:55] NAME="CentOS Linux"
[2025-11-24 05:20:55] VERSION="7 (Core)"
[2025-11-24 05:20:55] ID="centos"
[2025-11-24 05:20:55] ID_LIKE="rhel fedora"
[2025-11-24 05:20:55] VERSION_ID="7"
[2025-11-24 05:20:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 05:20:55] ANSI_COLOR="0;31"
[2025-11-24 05:20:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 05:20:55] HOME_URL="https://www.centos.org/"
[2025-11-24 05:20:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 05:20:55] 
[2025-11-24 05:20:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 05:20:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 05:20:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 05:20:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 05:20:55] 
[2025-11-24 05:20:55] 2025-11-24 13:20:24,092 | INFO     | ***************************************
[2025-11-24 05:20:55] 2025-11-24 13:20:24,594 | INFO     | executing command: df -mP /var/lib/multiboinc/boinc224/slots/1
[2025-11-24 05:20:55] 2025-11-24 13:20:24,655 | INFO     | sufficient remaining disk space (41197502464 B)
[2025-11-24 05:20:55] 2025-11-24 13:20:24,655 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 05:20:55] 2025-11-24 13:20:24,655 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 05:20:55] 2025-11-24 13:20:24,656 | INFO     | update_server=False
[2025-11-24 05:20:55] 2025-11-24 13:20:24,656 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 05:20:55] 2025-11-24 13:20:24,656 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 05:20:55] 2025-11-24 13:20:24,879 | INFO     | all data control threads have been joined
[2025-11-24 05:20:55] 2025-11-24 13:20:24,905 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 05:20:55] 2025-11-24 13:20:24,905 | INFO     | aborting loop
[2025-11-24 05:20:55] 2025-11-24 13:20:25,183 | INFO     | all payload control threads have been joined
[2025-11-24 05:20:55] 2025-11-24 13:20:25,667 | INFO     | [job] retrieve thread has finished
[2025-11-24 05:20:55] 2025-11-24 13:20:25,776 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 05:20:55] 2025-11-24 13:20:25,886 | INFO     | [data] control thread has finished
[2025-11-24 05:20:55] 2025-11-24 13:20:25,896 | INFO     | [payload] validate_post thread has finished
[2025-11-24 05:20:55] 2025-11-24 13:20:25,905 | INFO     | all job control threads have been joined
[2025-11-24 05:20:55] 2025-11-24 13:20:25,910 | INFO     | [job] job monitor thread has finished
[2025-11-24 05:20:55] 2025-11-24 13:20:26,153 | INFO     | [monitor] cgroup control has ended
[2025-11-24 05:20:55] 2025-11-24 13:20:26,188 | INFO     | [payload] control thread has finished
[2025-11-24 05:20:55] 2025-11-24 13:20:26,248 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 05:20:55] 2025-11-24 13:20:26,443 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 05:20:55] 2025-11-24 13:20:26,638 | INFO     | [data] copytool_in thread has finished
[2025-11-24 05:20:55] 2025-11-24 13:20:26,665 | INFO     | [data] copytool_out thread has finished
[2025-11-24 05:20:55] 2025-11-24 13:20:26,734 | INFO     | [job] validate thread has finished
[2025-11-24 05:20:55] 2025-11-24 13:20:26,895 | INFO     | [payload] failed_post thread has finished
[2025-11-24 05:20:55] 2025-11-24 13:20:26,910 | INFO     | [job] control thread has finished
[2025-11-24 05:20:55] 2025-11-24 13:20:26,929 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 05:20:55] 2025-11-24 13:20:26,941 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 05:20:55] 2025-11-24 13:20:27,253 | INFO     | [job] queue monitor thread has finished
[2025-11-24 05:20:55] 2025-11-24 13:20:27,539 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 05:20:55] 2025-11-24 13:20:31,544 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 05:20:55] 2025-11-24 13:20:33,330 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 133215198160704)>', '<ExcThread(monitor, started 133214576305920)>']
[2025-11-24 05:20:55] 2025-11-24 13:20:38,357 | INFO     | all workflow threads have been joined
[2025-11-24 05:20:55] 2025-11-24 13:20:38,357 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 05:20:55] 2025-11-24 13:20:38,358 | INFO     | traces error code: 0
[2025-11-24 05:20:55] 2025-11-24 13:20:38,358 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 05:20:55] 2025-11-24 13:20:54,466 | INFO     | PID=3637686 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 05:20:55] 2025-11-24 13:20:54,467 | INFO     | .. there are 12 such processes running
[2025-11-24 05:20:55] 2025-11-24 13:20:54,473 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 05:20:55] 2025-11-24 13:20:54,473 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 05:20:55] 2025-11-24 13:20:54,474 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 05:20:55] 2025-11-24 13:20:54,474 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 05:20:55] 2025-11-24 13:20:54,474 | CRITICAL | thread 'MainThread' is not alive
[2025-11-24 05:20:55] 2025-11-24 13:20:54,474 | INFO     | [monitor] control thread has ended
[2025-11-24 05:20:55] 2025-11-24 13:20:54,856 [wrapper] ==== pilot stdout END ====
[2025-11-24 05:20:55] 2025-11-24 13:20:54,863 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 05:20:55] 2025-11-24 13:20:54,870 [wrapper] pilotpid: 3637686
[2025-11-24 05:20:55] 2025-11-24 13:20:54,880 [wrapper] Pilot exit status: 0
[2025-11-24 05:20:55] 2025-11-24 13:20:54,929 [wrapper] pandaids: 6895339080
[2025-11-24 05:20:55] 2025-11-24 13:20:55,068 [wrapper] cleanup supervisor_pilot  686616 3637687
[2025-11-24 05:20:55] 2025-11-24 13:20:55,080 [wrapper] Test setup, not cleaning
[2025-11-24 05:20:55] 2025-11-24 13:20:55,087 [wrapper] apfmon messages muted
[2025-11-24 05:20:55] 2025-11-24 13:20:55,108 [wrapper] ==== wrapper stdout END ====
[2025-11-24 05:20:55] 2025-11-24 13:20:55,118 [wrapper] ==== wrapper stderr END ====
[2025-11-24 05:20:55]  *** Error codes and diagnostics ***
[2025-11-24 05:20:55]     "exeErrorCode": 0,
[2025-11-24 05:20:55]     "exeErrorDiag": "",
[2025-11-24 05:20:55]     "pilotErrorCode": 0,
[2025-11-24 05:20:55]     "pilotErrorDiag": "",
[2025-11-24 05:20:55]  *** Listing of results directory ***
[2025-11-24 05:20:55] total 1313064
[2025-11-24 05:20:55] -rw-r--r-- 1 root root    576529 Nov 22 01:55 pilot3.tar.gz
[2025-11-24 05:20:55] -rwx------ 1 4871 1028     36292 Nov 22 02:05 runpilot2-wrapper.sh
[2025-11-24 05:20:55] -rw-r--r-- 1 root root      5112 Nov 22 02:05 queuedata.json
[2025-11-24 05:20:55] -rw-r--r-- 1 root root       100 Nov 23 10:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 05:20:55] -rwxr-xr-x 1 root root      7986 Nov 23 10:40 run_atlas
[2025-11-24 05:20:55] -rw-r--r-- 1 root root       105 Nov 23 10:40 job.xml
[2025-11-24 05:20:55] -rw-r--r-- 2 root root 411750002 Nov 23 10:40 EVNT.47483658._001083.pool.root.1
[2025-11-24 05:20:55] drwxrwx--x 2 root root      4096 Nov 23 10:40 shared
[2025-11-24 05:20:55] -rw-r--r-- 2 root root    590096 Nov 23 10:40 input.tar.gz
[2025-11-24 05:20:55] -rw-r--r-- 2 root root     15847 Nov 23 10:40 start_atlas.sh
[2025-11-24 05:20:55] -rw-r--r-- 1 root root         0 Nov 23 10:40 boinc_setup_complete
[2025-11-24 05:20:55] -rw-r--r-- 1 root root         0 Nov 23 10:40 boinc_lockfile
[2025-11-24 05:20:55] -rw-r--r-- 1 root root      2781 Nov 23 10:40 pandaJob.out
[2025-11-24 05:20:55] -rw------- 1 root root    989786 Nov 23 10:41 agis_schedconf.cvmfs.json
[2025-11-24 05:20:55] drwxr-xr-x 5  320  320      4096 Nov 23 10:41 pilot3
[2025-11-24 05:20:55] -rw-r--r-- 1 root root      9242 Nov 23 15:46 init_data.xml
[2025-11-24 05:20:55] -rw-r--r-- 1 root root       533 Nov 24 04:55 boinc_task_state.xml
[2025-11-24 05:20:55] -rw------- 1 root root 905437205 Nov 24 05:18 HITS.47556149._000691.pool.root.1
[2025-11-24 05:20:55] -rw------- 1 root root      1049 Nov 24 05:19 memory_monitor_summary.json
[2025-11-24 05:20:55] -rw------- 1 root root   1516227 Nov 24 05:19 agis_ddmendpoints.agis.ALL.json
[2025-11-24 05:20:55] -rw------- 1 root root   2483419 Nov 24 05:20 log.47556149._000691.job.log.tgz.1
[2025-11-24 05:20:55] -rw------- 1 root root      8604 Nov 24 05:20 heartbeat.json
[2025-11-24 05:20:55] -rw-r--r-- 1 root root      8192 Nov 24 05:20 boinc_mmap_file
[2025-11-24 05:20:55] -rw-r--r-- 1 root root        29 Nov 24 05:20 wrapper_checkpoint.txt
[2025-11-24 05:20:55] -rw------- 1 root root        95 Nov 24 05:20 pilot_heartbeat.json
[2025-11-24 05:20:55] -rw------- 1 root root       893 Nov 24 05:20 pilotlog.txt
[2025-11-24 05:20:55] -rw------- 1 root root   9256911 Nov 24 05:20 log.47556149._000691.job.log.1
[2025-11-24 05:20:55] -rw------- 1 root root       353 Nov 24 05:20 output.list
[2025-11-24 05:20:55] -rw-r--r-- 1 root root       620 Nov 24 05:20 runtime_log
[2025-11-24 05:20:55] -rw------- 1 root root  11755520 Nov 24 05:20 result.tar.gz
[2025-11-24 05:20:55] -rw-r--r-- 1 root root      9021 Nov 24 05:20 runtime_log.err
[2025-11-24 05:20:55] -rw------- 1 root root       661 Nov 24 05:20 eeZNDmZfzg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmn6JKDmIUgppm.diag
[2025-11-24 05:20:55] -rw-r--r-- 1 root root     21930 Nov 24 05:20 stderr.txt
[2025-11-24 05:20:55] HITS file was successfully produced:
[2025-11-24 05:20:55] -rw------- 1 root root 905437205 Nov 24 05:18 shared/HITS.pool.root.1
[2025-11-24 05:20:55]  *** Contents of shared directory: ***
[2025-11-24 05:20:55] total 1298404
[2025-11-24 05:20:55] -rw-r--r-- 2 root root 411750002 Nov 23 10:40 ATLAS.root_0
[2025-11-24 05:20:55] -rw-r--r-- 2 root root    590096 Nov 23 10:40 input.tar.gz
[2025-11-24 05:20:55] -rw-r--r-- 2 root root     15847 Nov 23 10:40 start_atlas.sh
[2025-11-24 05:20:55] -rw------- 1 root root 905437205 Nov 24 05:18 HITS.pool.root.1
[2025-11-24 05:20:55] -rw------- 1 root root  11755520 Nov 24 05:20 result.tar.gz
05:20:57 (3626817): run_atlas exited; CPU time 212047.041793
05:20:57 (3626817): called boinc_finish(0)

</stderr_txt>
]]>

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