Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
05:06:50 (666797): wrapper (7.7.26015): starting
05:06:50 (666797): wrapper: running run_atlas (--nthreads 10)
[2025-11-24 05:06:50] Arguments: --nthreads 10
[2025-11-24 05:06:50] Threads: 10
[2025-11-24 05:06:50] Checking for CVMFS
[2025-11-24 05:06:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 05:06:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 05:06:51] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 05:06:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 05:06:52] 2.13.3.0 7351 8491 51016 153246 2 81 2759993 4096000 10375 130560 0 26058105 99.978 597910 746 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-24 05:06:52] CVMFS is ok
[2025-11-24 05:06:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 05:06:52] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-24 05:06:52] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-24 05:06:52] Further information can be found at the LHC@home message board.
[2025-11-24 05:06:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 05:06:52] Checking for apptainer binary...
[2025-11-24 05:06:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 05:06:52] Running /usr/bin/apptainer --version
[2025-11-24 05:06:52] apptainer version 1.4.2
[2025-11-24 05:06:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 05:06:52] 3950x-linux
[2025-11-24 05:06:52] apptainer works
[2025-11-24 05:06:52] Set ATHENA_PROC_NUMBER=10
[2025-11-24 05:06:52] Set ATHENA_CORE_NUMBER=10
[2025-11-24 05:06:52] Starting ATLAS job with PandaID=6895350298
[2025-11-24 05:06:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/multiboinc/boinc225/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 02:34:41]  *** The last 200 lines of the pilot log: ***
[2025-11-25 02:34:41] 2025-11-25 10:33:47,751 | INFO     | time since job start (77181s) is within the limit (172800.0s)
[2025-11-25 02:34:41] 2025-11-25 10:33:49,750 | INFO     | monitor loop #5013: job 0:6895350298 is in state 'finished'
[2025-11-25 02:34:41] 2025-11-25 10:33:49,750 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 02:34:41] 2025-11-25 10:33:49,756 | INFO     | time since job start (77183s) is within the limit (172800.0s)
[2025-11-25 02:34:41] 2025-11-25 10:33:51,762 | INFO     | time since job start (77185s) is within the limit (172800.0s)
[2025-11-25 02:34:41] 2025-11-25 10:33:52,253 | INFO     | monitor loop #5014: job 0:6895350298 is in state 'finished'
[2025-11-25 02:34:41] 2025-11-25 10:33:52,253 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 02:34:41] 2025-11-25 10:33:53,766 | INFO     | time since job start (77187s) is within the limit (172800.0s)
[2025-11-25 02:34:41] 2025-11-25 10:33:54,756 | INFO     | monitor loop #5015: job 0:6895350298 is in state 'finished'
[2025-11-25 02:34:41] 2025-11-25 10:33:54,756 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 02:34:41] 2025-11-25 10:33:55,775 | INFO     | time since job start (77189s) is within the limit (172800.0s)
[2025-11-25 02:34:41] 2025-11-25 10:33:57,261 | INFO     | monitor loop #5016: job 0:6895350298 is in state 'finished'
[2025-11-25 02:34:41] 2025-11-25 10:33:57,262 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 02:34:41] 2025-11-25 10:33:57,785 | INFO     | time since job start (77191s) is within the limit (172800.0s)
[2025-11-25 02:34:41] 2025-11-25 10:33:59,439 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 02:34:41] 2025-11-25 10:33:59,451 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3249.7846250000002
[2025-11-25 02:34:41] 2025-11-25 10:33:59,472 | INFO     | using path: /var/lib/multiboinc/boinc225/slots/3/PanDA_Pilot-6895350298/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 02:34:41] 2025-11-25 10:33:59,473 | INFO     | extracted standard info from prmon json
[2025-11-25 02:34:41] 2025-11-25 10:33:59,473 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 02:34:41] 2025-11-25 10:33:59,473 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 02:34:41] 2025-11-25 10:33:59,546 | INFO     | fitting pss+swap vs Time
[2025-11-25 02:34:41] 2025-11-25 10:33:59,548 | INFO     | sum of square deviations: 626211500904.031
[2025-11-25 02:34:41] 2025-11-25 10:33:59,676 | INFO     | sum of deviations: 2885421398767.7427
[2025-11-25 02:34:41] 2025-11-25 10:33:59,676 | INFO     | mean x: 1764028243.02769
[2025-11-25 02:34:41] 2025-11-25 10:33:59,676 | INFO     | mean y: 3129192.6930379746
[2025-11-25 02:34:41] 2025-11-25 10:33:59,676 | INFO     | intersect: -8125058860.567924
[2025-11-25 02:34:41] 2025-11-25 10:33:59,680 | INFO     | chi2: 14.562825214923302
[2025-11-25 02:34:41] 2025-11-25 10:33:59,682 | INFO     | sum of square deviations: 618810936006.5613
[2025-11-25 02:34:41] 2025-11-25 10:33:59,769 | INFO     | monitor loop #5017: job 0:6895350298 is in state 'finished'
[2025-11-25 02:34:41] 2025-11-25 10:33:59,770 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 02:34:41] 2025-11-25 10:33:59,773 | INFO     | sum of deviations: 3360479656839.1426
[2025-11-25 02:34:41] 2025-11-25 10:33:59,779 | INFO     | mean x: 1764028090.5416996
[2025-11-25 02:34:41] 2025-11-25 10:33:59,780 | INFO     | mean y: 3138979.6258935663
[2025-11-25 02:34:41] 2025-11-25 10:33:59,780 | INFO     | intersect: -9576492160.401865
[2025-11-25 02:34:41] 2025-11-25 10:33:59,781 | INFO     | chi2: 11.172823124916759
[2025-11-25 02:34:41] 2025-11-25 10:33:59,781 | INFO     | current chi2=11.172823124916759 (change=23.278464446120164 %)
[2025-11-25 02:34:41] 2025-11-25 10:33:59,781 | INFO     | right removable region: 1258
[2025-11-25 02:34:41] 2025-11-25 10:33:59,787 | INFO     | sum of square deviations: 618808216016.561
[2025-11-25 02:34:41] 2025-11-25 10:33:59,798 | INFO     | time since job start (77193s) is within the limit (172800.0s)
[2025-11-25 02:34:41] 2025-11-25 10:33:59,892 | INFO     | sum of deviations: 2388024599164.4985
[2025-11-25 02:34:41] 2025-11-25 10:33:59,892 | INFO     | mean x: 1764028395.5416996
[2025-11-25 02:34:41] 2025-11-25 10:33:59,892 | INFO     | mean y: 3139437.0285941223
[2025-11-25 02:34:41] 2025-11-25 10:33:59,892 | INFO     | intersect: -6804370698.010597
[2025-11-25 02:34:41] 2025-11-25 10:33:59,893 | INFO     | chi2: 11.232796764849907
[2025-11-25 02:34:41] 2025-11-25 10:33:59,893 | INFO     | current chi2=11.232796764849907 (change=22.866637489138704 %)
[2025-11-25 02:34:41] 2025-11-25 10:33:59,893 | INFO     | left removable region: 10
[2025-11-25 02:34:41] 2025-11-25 10:33:59,901 | INFO     | sum of square deviations: 602730359086.9359
[2025-11-25 02:34:41] 2025-11-25 10:34:00,001 | INFO     | sum of deviations: 2643211382787.1333
[2025-11-25 02:34:41] 2025-11-25 10:34:00,001 | INFO     | mean x: 1764028365.0697114
[2025-11-25 02:34:41] 2025-11-25 10:34:00,002 | INFO     | mean y: 3157685.5272435895
[2025-11-25 02:34:41] 2025-11-25 10:34:00,002 | INFO     | intersect: -7732805475.802589
[2025-11-25 02:34:41] 2025-11-25 10:34:00,003 | INFO     | chi2: 5.94834325536627
[2025-11-25 02:34:41] 2025-11-25 10:34:00,003 | INFO     | current memory leak: 4.39 B/s (using 1248 data points, chi2=5.95)
[2025-11-25 02:34:41] 2025-11-25 10:34:00,010 | INFO     | could have reported an average CPU frequency of 3249 MHz (46 samples)
[2025-11-25 02:34:41] 2025-11-25 10:34:00,010 | INFO     | ..............................
[2025-11-25 02:34:41] 2025-11-25 10:34:00,011 | INFO     | . Timing measurements:
[2025-11-25 02:34:41] 2025-11-25 10:34:00,011 | INFO     | . get job = 0 s
[2025-11-25 02:34:41] 2025-11-25 10:34:00,011 | INFO     | . initial setup = 4 s
[2025-11-25 02:34:41] 2025-11-25 10:34:00,011 | INFO     | . payload setup = 20 s
[2025-11-25 02:34:41] 2025-11-25 10:34:00,011 | INFO     | . stage-in = 0 s
[2025-11-25 02:34:41] 2025-11-25 10:34:00,011 | INFO     | . payload execution = 77105 s
[2025-11-25 02:34:41] 2025-11-25 10:34:00,011 | INFO     | . stage-out = 8 s
[2025-11-25 02:34:41] 2025-11-25 10:34:00,011 | INFO     | . log creation = 2 s
[2025-11-25 02:34:41] 2025-11-25 10:34:00,011 | INFO     | ..............................
[2025-11-25 02:34:41] 2025-11-25 10:34:00,562 | INFO     | 
[2025-11-25 02:34:41] 2025-11-25 10:34:00,562 | INFO     | job summary report
[2025-11-25 02:34:41] 2025-11-25 10:34:00,563 | INFO     | --------------------------------------------------
[2025-11-25 02:34:41] 2025-11-25 10:34:00,563 | INFO     | PanDA job id: 6895350298
[2025-11-25 02:34:41] 2025-11-25 10:34:00,563 | INFO     | task id: 47556137
[2025-11-25 02:34:41] 2025-11-25 10:34:00,563 | INFO     | errors: (none)
[2025-11-25 02:34:41] 2025-11-25 10:34:00,563 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 02:34:41] 2025-11-25 10:34:00,563 | INFO     | pilot state: finished 
[2025-11-25 02:34:41] 2025-11-25 10:34:00,563 | INFO     | transexitcode: 0
[2025-11-25 02:34:41] 2025-11-25 10:34:00,563 | INFO     | exeerrorcode: 0
[2025-11-25 02:34:41] 2025-11-25 10:34:00,563 | INFO     | exeerrordiag: 
[2025-11-25 02:34:41] 2025-11-25 10:34:00,563 | INFO     | exitcode: 0
[2025-11-25 02:34:41] 2025-11-25 10:34:00,563 | INFO     | exitmsg: OK
[2025-11-25 02:34:41] 2025-11-25 10:34:00,563 | INFO     | cpuconsumptiontime: 216965 s
[2025-11-25 02:34:41] 2025-11-25 10:34:00,563 | INFO     | nevents: 1000
[2025-11-25 02:34:41] 2025-11-25 10:34:00,563 | INFO     | neventsw: 0
[2025-11-25 02:34:41] 2025-11-25 10:34:00,563 | INFO     | pid: 679528
[2025-11-25 02:34:41] 2025-11-25 10:34:00,563 | INFO     | pgrp: 679528
[2025-11-25 02:34:41] 2025-11-25 10:34:00,564 | INFO     | corecount: 10
[2025-11-25 02:34:41] 2025-11-25 10:34:00,564 | INFO     | event service: False
[2025-11-25 02:34:41] 2025-11-25 10:34:00,564 | INFO     | sizes: {0: 2284045, 1: 2284244, 12: 2284244, 16: 2284534, 23: 2284562, 77129: 2347749, 77130: 2347876, 77139: 2356959, 77140: 2357015, 77157: 2357261}
[2025-11-25 02:34:41] 2025-11-25 10:34:00,564 | INFO     | --------------------------------------------------
[2025-11-25 02:34:41] 2025-11-25 10:34:00,564 | INFO     | 
[2025-11-25 02:34:41] 2025-11-25 10:34:00,564 | INFO     | executing command: ls -lF /var/lib/multiboinc/boinc225/slots/3
[2025-11-25 02:34:41] 2025-11-25 10:34:00,628 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 02:34:41] 2025-11-25 10:34:00,629 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 02:34:41] 2025-11-25 10:34:00,629 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 02:34:41] 2025-11-25 10:34:00,629 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 02:34:41] 2025-11-25 10:34:00,629 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 02:34:41] 2025-11-25 10:34:00,629 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 02:34:41] 2025-11-25 10:34:00,629 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 02:34:41] 2025-11-25 10:34:00,629 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 02:34:41] 2025-11-25 10:34:00,629 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 02:34:41] 2025-11-25 10:34:00,629 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 02:34:41] 2025-11-25 10:34:00,629 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 02:34:41] 2025-11-25 10:34:00,629 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 02:34:41] 2025-11-25 10:34:00,629 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 02:34:41] 2025-11-25 10:34:00,630 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 02:34:41] 2025-11-25 10:34:00,630 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 02:34:41] 2025-11-25 10:34:00,630 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 02:34:41] 2025-11-25 10:34:00,630 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 02:34:41] 2025-11-25 10:34:00,630 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 02:34:41] 2025-11-25 10:34:00,630 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 02:34:41] 2025-11-25 10:34:00,630 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 02:34:41] 2025-11-25 10:34:00,630 | INFO     | job 6895350298 has completed (purged errors)
[2025-11-25 02:34:41] 2025-11-25 10:34:00,630 | INFO     | overall cleanup function is called
[2025-11-25 02:34:41] 2025-11-25 10:34:01,665 | INFO     | --- collectZombieJob: --- 10, [679528]
[2025-11-25 02:34:41] 2025-11-25 10:34:01,665 | INFO     | zombie collector waiting for pid 679528
[2025-11-25 02:34:41] 2025-11-25 10:34:01,666 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 02:34:41] 2025-11-25 10:34:01,666 | INFO     | collected zombie processes
[2025-11-25 02:34:41] 2025-11-25 10:34:01,666 | INFO     | will attempt to kill all subprocesses of pid=679528
[2025-11-25 02:34:41] 2025-11-25 10:34:02,597 | INFO     | process IDs to be killed: [679528] (in reverse order)
[2025-11-25 02:34:41] 2025-11-25 10:34:02,988 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 02:34:41] 2025-11-25 10:34:02,988 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 02:34:41] 2025-11-25 10:34:03,035 | INFO     | did not find any defunct processes belonging to 679528
[2025-11-25 02:34:41] 2025-11-25 10:34:03,079 | INFO     | did not find any defunct processes belonging to 679528
[2025-11-25 02:34:41] 2025-11-25 10:34:03,081 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 02:34:41] 2025-11-25 10:34:03,081 | INFO     | ready for new job
[2025-11-25 02:34:41] 2025-11-25 10:34:03,081 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 02:34:41] 2025-11-25 10:34:03,098 | INFO     | ***************************************
[2025-11-25 02:34:41] 2025-11-25 10:34:03,098 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 02:34:41] 2025-11-25 10:34:03,098 | INFO     | ***************************************
[2025-11-25 02:34:41] 2025-11-25 10:34:03,098 | INFO     | 
[2025-11-25 02:34:41] 2025-11-25 10:34:03,100 | INFO     | architecture information:
[2025-11-25 02:34:41] 2025-11-25 10:34:03,106 | INFO     | executing command: cat /etc/os-release
[2025-11-25 02:34:41] 2025-11-25 10:34:03,172 | INFO     | cat /etc/os-release:
[2025-11-25 02:34:41] NAME="CentOS Linux"
[2025-11-25 02:34:41] VERSION="7 (Core)"
[2025-11-25 02:34:41] ID="centos"
[2025-11-25 02:34:41] ID_LIKE="rhel fedora"
[2025-11-25 02:34:41] VERSION_ID="7"
[2025-11-25 02:34:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 02:34:41] ANSI_COLOR="0;31"
[2025-11-25 02:34:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 02:34:41] HOME_URL="https://www.centos.org/"
[2025-11-25 02:34:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 02:34:41] 
[2025-11-25 02:34:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 02:34:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 02:34:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 02:34:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 02:34:41] 
[2025-11-25 02:34:41] 2025-11-25 10:34:03,172 | INFO     | ***************************************
[2025-11-25 02:34:41] 2025-11-25 10:34:03,675 | INFO     | executing command: df -mP /var/lib/multiboinc/boinc225/slots/3
[2025-11-25 02:34:41] 2025-11-25 10:34:03,739 | INFO     | sufficient remaining disk space (64009273344 B)
[2025-11-25 02:34:41] 2025-11-25 10:34:03,739 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 02:34:41] 2025-11-25 10:34:03,739 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 02:34:41] 2025-11-25 10:34:03,739 | INFO     | update_server=False
[2025-11-25 02:34:41] 2025-11-25 10:34:03,739 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 02:34:41] 2025-11-25 10:34:03,740 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 02:34:41] 2025-11-25 10:34:03,740 | INFO     | aborting loop
[2025-11-25 02:34:41] 2025-11-25 10:34:03,740 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 02:34:41] 2025-11-25 10:34:03,740 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 02:34:41] 2025-11-25 10:34:03,934 | INFO     | all data control threads have been joined
[2025-11-25 02:34:41] 2025-11-25 10:34:04,727 | INFO     | all payload control threads have been joined
[2025-11-25 02:34:41] 2025-11-25 10:34:04,746 | INFO     | [job] job monitor thread has finished
[2025-11-25 02:34:41] 2025-11-25 10:34:04,748 | INFO     | [job] retrieve thread has finished
[2025-11-25 02:34:41] 2025-11-25 10:34:04,939 | INFO     | [data] control thread has finished
[2025-11-25 02:34:41] 2025-11-25 10:34:05,069 | INFO     | [job] validate thread has finished
[2025-11-25 02:34:41] 2025-11-25 10:34:05,085 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 02:34:41] 2025-11-25 10:34:05,087 | INFO     | [data] copytool_in thread has finished
[2025-11-25 02:34:41] 2025-11-25 10:34:05,130 | INFO     | all job control threads have been joined
[2025-11-25 02:34:41] 2025-11-25 10:34:05,316 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 02:34:41] 2025-11-25 10:34:05,325 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 02:34:41] 2025-11-25 10:34:05,587 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 02:34:41] 2025-11-25 10:34:05,732 | INFO     | [payload] control thread has finished
[2025-11-25 02:34:41] 2025-11-25 10:34:05,750 | INFO     | [data] copytool_out thread has finished
[2025-11-25 02:34:41] 2025-11-25 10:34:05,846 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 02:34:41] 2025-11-25 10:34:05,907 | INFO     | [payload] failed_post thread has finished
[2025-11-25 02:34:41] 2025-11-25 10:34:05,978 | INFO     | [payload] validate_post thread has finished
[2025-11-25 02:34:41] 2025-11-25 10:34:06,135 | INFO     | [job] control thread has finished
[2025-11-25 02:34:41] 2025-11-25 10:34:06,330 | INFO     | [job] queue monitor thread has finished
[2025-11-25 02:34:41] 2025-11-25 10:34:07,754 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 02:34:41] 2025-11-25 10:34:34,054 | INFO     | PID=670679 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 02:34:41] 2025-11-25 10:34:34,054 | INFO     | .. there are 12 such processes running
[2025-11-25 02:34:41] 2025-11-25 10:34:34,055 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 02:34:41] 2025-11-25 10:34:34,055 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 02:34:41] 2025-11-25 10:34:34,055 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 02:34:41] 2025-11-25 10:34:34,790 | INFO     | [monitor] cgroup control has ended
[2025-11-25 02:34:41] 2025-11-25 10:34:34,898 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 128491001022272)>', '<ExcThread(monitor, started 128490372323072)>']
[2025-11-25 02:34:41] 2025-11-25 10:34:35,064 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 02:34:41] 2025-11-25 10:34:35,064 | INFO     | [monitor] control thread has ended
[2025-11-25 02:34:41] 2025-11-25 10:34:39,923 | INFO     | all workflow threads have been joined
[2025-11-25 02:34:41] 2025-11-25 10:34:39,923 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 02:34:41] 2025-11-25 10:34:39,924 | INFO     | traces error code: 0
[2025-11-25 02:34:41] 2025-11-25 10:34:39,924 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 02:34:41] 2025-11-25 10:34:40,441 [wrapper] ==== pilot stdout END ====
[2025-11-25 02:34:41] 2025-11-25 10:34:40,457 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 02:34:41] 2025-11-25 10:34:40,489 [wrapper] pilotpid: 670679
[2025-11-25 02:34:41] 2025-11-25 10:34:40,511 [wrapper] Pilot exit status: 0
[2025-11-25 02:34:41] 2025-11-25 10:34:40,561 [wrapper] pandaids: 6895350298
[2025-11-25 02:34:41] 2025-11-25 10:34:40,782 [wrapper] cleanup supervisor_pilot 2094442 670680
[2025-11-25 02:34:41] 2025-11-25 10:34:40,802 [wrapper] Test setup, not cleaning
[2025-11-25 02:34:41] 2025-11-25 10:34:40,814 [wrapper] apfmon messages muted
[2025-11-25 02:34:41] 2025-11-25 10:34:40,831 [wrapper] ==== wrapper stdout END ====
[2025-11-25 02:34:41] 2025-11-25 10:34:40,855 [wrapper] ==== wrapper stderr END ====
[2025-11-25 02:34:41]  *** Error codes and diagnostics ***
[2025-11-25 02:34:41]     "exeErrorCode": 0,
[2025-11-25 02:34:41]     "exeErrorDiag": "",
[2025-11-25 02:34:41]     "pilotErrorCode": 0,
[2025-11-25 02:34:41]     "pilotErrorDiag": "",
[2025-11-25 02:34:41]  *** Listing of results directory ***
[2025-11-25 02:34:41] total 1325276
[2025-11-25 02:34:41] -rw-r--r-- 1 root root    576529 Nov 22 12:41 pilot3.tar.gz
[2025-11-25 02:34:41] -rwx------ 1 4871 1028     36292 Nov 22 12:59 runpilot2-wrapper.sh
[2025-11-25 02:34:41] -rw-r--r-- 1 root root      5112 Nov 22 12:59 queuedata.json
[2025-11-25 02:34:41] -rw-r--r-- 1 root root       100 Nov 24 05:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 02:34:41] -rwxr-xr-x 1 root root      7986 Nov 24 05:06 run_atlas
[2025-11-25 02:34:41] -rw-r--r-- 1 root root       105 Nov 24 05:06 job.xml
[2025-11-25 02:34:41] -rw-r--r-- 2 root root 410893963 Nov 24 05:06 EVNT.47483658._000506.pool.root.1
[2025-11-25 02:34:41] drwxrwx--x 2 root root      4096 Nov 24 05:06 shared
[2025-11-25 02:34:41] -rw-r--r-- 2 root root    590102 Nov 24 05:06 input.tar.gz
[2025-11-25 02:34:41] -rw-r--r-- 2 root root     15847 Nov 24 05:06 start_atlas.sh
[2025-11-25 02:34:41] -rw-r--r-- 1 root root         0 Nov 24 05:06 boinc_setup_complete
[2025-11-25 02:34:41] -rw-r--r-- 1 root root      9235 Nov 24 05:06 init_data.xml
[2025-11-25 02:34:41] -rw-r--r-- 1 root root         0 Nov 24 05:06 boinc_lockfile
[2025-11-25 02:34:41] -rw-r--r-- 1 root root      2781 Nov 24 05:06 pandaJob.out
[2025-11-25 02:34:41] -rw------- 1 root root    988279 Nov 24 05:07 agis_schedconf.cvmfs.json
[2025-11-25 02:34:41] drwxr-xr-x 5  320  320      4096 Nov 24 05:07 pilot3
[2025-11-25 02:34:41] -rw-r--r-- 1 root root       533 Nov 25 02:06 boinc_task_state.xml
[2025-11-25 02:34:41] -rw------- 1 root root 915974678 Nov 25 02:32 HITS.47556137._005011.pool.root.1
[2025-11-25 02:34:41] -rw------- 1 root root      1050 Nov 25 02:33 memory_monitor_summary.json
[2025-11-25 02:34:41] -rw------- 1 root root        95 Nov 25 02:33 pilot_heartbeat.json
[2025-11-25 02:34:41] -rw------- 1 root root   1516240 Nov 25 02:33 agis_ddmendpoints.agis.ALL.json
[2025-11-25 02:34:41] -rw------- 1 root root   2605101 Nov 25 02:33 log.47556137._005011.job.log.tgz.1
[2025-11-25 02:34:41] -rw------- 1 root root      8596 Nov 25 02:34 heartbeat.json
[2025-11-25 02:34:41] -rw-r--r-- 1 root root      8192 Nov 25 02:34 boinc_mmap_file
[2025-11-25 02:34:41] -rw-r--r-- 1 root root        29 Nov 25 02:34 wrapper_checkpoint.txt
[2025-11-25 02:34:41] -rw------- 1 root root      4837 Nov 25 02:34 pilotlog.txt
[2025-11-25 02:34:41] -rw------- 1 root root  10540250 Nov 25 02:34 log.47556137._005011.job.log.1
[2025-11-25 02:34:41] -rw------- 1 root root       353 Nov 25 02:34 output.list
[2025-11-25 02:34:41] -rw-r--r-- 1 root root       620 Nov 25 02:34 runtime_log
[2025-11-25 02:34:41] -rw------- 1 root root  13168640 Nov 25 02:34 result.tar.gz
[2025-11-25 02:34:41] -rw------- 1 root root       661 Nov 25 02:34 yunLDmns9g8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmAIIKDmVUpACo.diag
[2025-11-25 02:34:41] -rw-r--r-- 1 root root      9021 Nov 25 02:34 runtime_log.err
[2025-11-25 02:34:41] -rw-r--r-- 1 root root     21902 Nov 25 02:34 stderr.txt
[2025-11-25 02:34:41] HITS file was successfully produced:
[2025-11-25 02:34:41] -rw------- 1 root root 915974678 Nov 25 02:32 shared/HITS.pool.root.1
[2025-11-25 02:34:41]  *** Contents of shared directory: ***
[2025-11-25 02:34:41] total 1309236
[2025-11-25 02:34:41] -rw-r--r-- 2 root root 410893963 Nov 24 05:06 ATLAS.root_0
[2025-11-25 02:34:41] -rw-r--r-- 2 root root    590102 Nov 24 05:06 input.tar.gz
[2025-11-25 02:34:41] -rw-r--r-- 2 root root     15847 Nov 24 05:06 start_atlas.sh
[2025-11-25 02:34:41] -rw------- 1 root root 915974678 Nov 25 02:32 HITS.pool.root.1
[2025-11-25 02:34:41] -rw------- 1 root root  13168640 Nov 25 02:34 result.tar.gz
02:34:42 (666797): run_atlas exited; CPU time 217139.279317
02:34:42 (666797): called boinc_finish(0)

</stderr_txt>
]]>

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