Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
16:26:48 (4102065): wrapper (7.7.26015): starting
16:26:48 (4102065): wrapper: running run_atlas (--nthreads 10)
[2025-11-23 16:26:48] Arguments: --nthreads 10
[2025-11-23 16:26:48] Threads: 10
[2025-11-23 16:26:48] Checking for CVMFS
[2025-11-23 16:26:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 16:26:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 16:26:49] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 16:26:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 16:26:50] 2.13.3.0 7351 7731 50788 153227 1 56 2671464 4096000 10495 130560 0 23910243 99.976 571569 735 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-23 16:26:50] CVMFS is ok
[2025-11-23 16:26:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 16:26:50] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-23 16:26:50] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-23 16:26:50] Further information can be found at the LHC@home message board.
[2025-11-23 16:26:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 16:26:50] Checking for apptainer binary...
[2025-11-23 16:26:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 16:26:50] Running /usr/bin/apptainer --version
[2025-11-23 16:26:50] apptainer version 1.4.2
[2025-11-23 16:26:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 16:26:50] 3950x-linux
[2025-11-23 16:26:50] apptainer works
[2025-11-23 16:26:50] Set ATHENA_PROC_NUMBER=10
[2025-11-23 16:26:50] Set ATHENA_CORE_NUMBER=10
[2025-11-23 16:26:50] Starting ATLAS job with PandaID=6895350370
[2025-11-23 16:26:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/multiboinc/boinc225/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 13:22:38]  *** The last 200 lines of the pilot log: ***
[2025-11-24 13:22:38] 2025-11-24 21:21:20,583 | INFO     | monitor loop #4921: job 0:6895350370 is in state 'finished'
[2025-11-24 13:22:38] 2025-11-24 21:21:20,583 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 13:22:38] 2025-11-24 21:21:20,876 | INFO     | time since job start (75233s) is within the limit (172800.0s)
[2025-11-24 13:22:38] 2025-11-24 21:21:22,886 | INFO     | time since job start (75235s) is within the limit (172800.0s)
[2025-11-24 13:22:38] 2025-11-24 21:21:23,087 | INFO     | monitor loop #4922: job 0:6895350370 is in state 'finished'
[2025-11-24 13:22:38] 2025-11-24 21:21:23,087 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 13:22:38] 2025-11-24 21:21:24,893 | INFO     | time since job start (75237s) is within the limit (172800.0s)
[2025-11-24 13:22:38] 2025-11-24 21:21:25,596 | INFO     | monitor loop #4923: job 0:6895350370 is in state 'finished'
[2025-11-24 13:22:38] 2025-11-24 21:21:25,596 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 13:22:38] 2025-11-24 21:21:26,901 | INFO     | time since job start (75239s) is within the limit (172800.0s)
[2025-11-24 13:22:38] 2025-11-24 21:21:28,099 | INFO     | monitor loop #4924: job 0:6895350370 is in state 'finished'
[2025-11-24 13:22:38] 2025-11-24 21:21:28,100 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 13:22:38] 2025-11-24 21:21:28,908 | INFO     | time since job start (75241s) is within the limit (172800.0s)
[2025-11-24 13:22:38] 2025-11-24 21:21:30,604 | INFO     | monitor loop #4925: job 0:6895350370 is in state 'finished'
[2025-11-24 13:22:38] 2025-11-24 21:21:30,604 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 13:22:38] 2025-11-24 21:21:30,916 | INFO     | time since job start (75243s) is within the limit (172800.0s)
[2025-11-24 13:22:38] 2025-11-24 21:21:32,265 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 13:22:38] 2025-11-24 21:21:32,281 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3249.7885937499996
[2025-11-24 13:22:38] 2025-11-24 21:21:32,305 | INFO     | using path: /var/lib/multiboinc/boinc225/slots/1/PanDA_Pilot-6895350370/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 13:22:38] 2025-11-24 21:21:32,305 | INFO     | extracted standard info from prmon json
[2025-11-24 13:22:38] 2025-11-24 21:21:32,306 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 13:22:38] 2025-11-24 21:21:32,306 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 13:22:38] 2025-11-24 21:21:32,360 | INFO     | fitting pss+swap vs Time
[2025-11-24 13:22:38] 2025-11-24 21:21:32,371 | INFO     | sum of square deviations: 579848538150.828
[2025-11-24 13:22:38] 2025-11-24 21:21:32,488 | INFO     | sum of deviations: 2529582194857.6113
[2025-11-24 13:22:38] 2025-11-24 21:21:32,488 | INFO     | mean x: 1763981675.5762987
[2025-11-24 13:22:38] 2025-11-24 21:21:32,488 | INFO     | mean y: 3136037.397727273
[2025-11-24 13:22:38] 2025-11-24 21:21:32,488 | INFO     | intersect: -7692212566.606559
[2025-11-24 13:22:38] 2025-11-24 21:21:32,498 | INFO     | chi2: 13.966348344228921
[2025-11-24 13:22:38] 2025-11-24 21:21:32,499 | INFO     | sum of square deviations: 572818529663.3167
[2025-11-24 13:22:38] 2025-11-24 21:21:32,593 | INFO     | sum of deviations: 2993198855827.5522
[2025-11-24 13:22:38] 2025-11-24 21:21:32,599 | INFO     | mean x: 1763981523.0888345
[2025-11-24 13:22:38] 2025-11-24 21:21:32,600 | INFO     | mean y: 3146092.215158924
[2025-11-24 13:22:38] 2025-11-24 21:21:32,600 | INFO     | intersect: -9214341127.88894
[2025-11-24 13:22:38] 2025-11-24 21:21:32,601 | INFO     | chi2: 10.600529090893806
[2025-11-24 13:22:38] 2025-11-24 21:21:32,601 | INFO     | current chi2=10.600529090893806 (change=24.099493800223847 %)
[2025-11-24 13:22:38] 2025-11-24 21:21:32,601 | INFO     | right removable region: 1226
[2025-11-24 13:22:38] 2025-11-24 21:21:32,602 | INFO     | sum of square deviations: 572816217763.3168
[2025-11-24 13:22:38] 2025-11-24 21:21:32,696 | INFO     | sum of deviations: 2044951090190.003
[2025-11-24 13:22:38] 2025-11-24 21:21:32,702 | INFO     | mean x: 1763981828.0888345
[2025-11-24 13:22:38] 2025-11-24 21:21:32,703 | INFO     | mean y: 3146545.0366748166
[2025-11-24 13:22:38] 2025-11-24 21:21:32,703 | INFO     | intersect: -6294259936.418965
[2025-11-24 13:22:38] 2025-11-24 21:21:32,704 | INFO     | chi2: 10.641652877565939
[2025-11-24 13:22:38] 2025-11-24 21:21:32,704 | INFO     | current chi2=10.641652877565939 (change=23.80504470258892 %)
[2025-11-24 13:22:38] 2025-11-24 21:21:32,704 | INFO     | left removable region: 10
[2025-11-24 13:22:38] 2025-11-24 21:21:32,705 | INFO     | sum of square deviations: 557548746046.3389
[2025-11-24 13:22:38] 2025-11-24 21:21:32,802 | INFO     | sum of deviations: 2297979607264.0713
[2025-11-24 13:22:38] 2025-11-24 21:21:32,802 | INFO     | mean x: 1763981797.6134868
[2025-11-24 13:22:38] 2025-11-24 21:21:32,802 | INFO     | mean y: 3165222.361842105
[2025-11-24 13:22:38] 2025-11-24 21:21:32,803 | INFO     | intersect: -7267220061.876443
[2025-11-24 13:22:38] 2025-11-24 21:21:32,803 | INFO     | chi2: 5.378324921151511
[2025-11-24 13:22:38] 2025-11-24 21:21:32,804 | INFO     | current memory leak: 4.12 B/s (using 1216 data points, chi2=5.38)
[2025-11-24 13:22:38] 2025-11-24 21:21:32,811 | INFO     | could have reported an average CPU frequency of 3249 MHz (45 samples)
[2025-11-24 13:22:38] 2025-11-24 21:21:32,811 | INFO     | ..............................
[2025-11-24 13:22:38] 2025-11-24 21:21:32,811 | INFO     | . Timing measurements:
[2025-11-24 13:22:38] 2025-11-24 21:21:32,811 | INFO     | . get job = 0 s
[2025-11-24 13:22:38] 2025-11-24 21:21:32,811 | INFO     | . initial setup = 5 s
[2025-11-24 13:22:38] 2025-11-24 21:21:32,811 | INFO     | . payload setup = 21 s
[2025-11-24 13:22:38] 2025-11-24 21:21:32,811 | INFO     | . stage-in = 0 s
[2025-11-24 13:22:38] 2025-11-24 21:21:32,811 | INFO     | . payload execution = 75148 s
[2025-11-24 13:22:38] 2025-11-24 21:21:32,811 | INFO     | . stage-out = 8 s
[2025-11-24 13:22:38] 2025-11-24 21:21:32,811 | INFO     | . log creation = 2 s
[2025-11-24 13:22:38] 2025-11-24 21:21:32,812 | INFO     | ..............................
[2025-11-24 13:22:38] 2025-11-24 21:21:32,927 | INFO     | time since job start (75245s) is within the limit (172800.0s)
[2025-11-24 13:22:38] 2025-11-24 21:21:33,049 | INFO     | 
[2025-11-24 13:22:38] 2025-11-24 21:21:33,049 | INFO     | job summary report
[2025-11-24 13:22:38] 2025-11-24 21:21:33,050 | INFO     | --------------------------------------------------
[2025-11-24 13:22:38] 2025-11-24 21:21:33,050 | INFO     | PanDA job id: 6895350370
[2025-11-24 13:22:38] 2025-11-24 21:21:33,050 | INFO     | task id: 47556137
[2025-11-24 13:22:38] 2025-11-24 21:21:33,050 | INFO     | errors: (none)
[2025-11-24 13:22:38] 2025-11-24 21:21:33,050 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 13:22:38] 2025-11-24 21:21:33,050 | INFO     | pilot state: finished 
[2025-11-24 13:22:38] 2025-11-24 21:21:33,050 | INFO     | transexitcode: 0
[2025-11-24 13:22:38] 2025-11-24 21:21:33,050 | INFO     | exeerrorcode: 0
[2025-11-24 13:22:38] 2025-11-24 21:21:33,050 | INFO     | exeerrordiag: 
[2025-11-24 13:22:38] 2025-11-24 21:21:33,050 | INFO     | exitcode: 0
[2025-11-24 13:22:38] 2025-11-24 21:21:33,050 | INFO     | exitmsg: OK
[2025-11-24 13:22:38] 2025-11-24 21:21:33,050 | INFO     | cpuconsumptiontime: 219365 s
[2025-11-24 13:22:38] 2025-11-24 21:21:33,050 | INFO     | nevents: 1000
[2025-11-24 13:22:38] 2025-11-24 21:21:33,050 | INFO     | neventsw: 0
[2025-11-24 13:22:38] 2025-11-24 21:21:33,050 | INFO     | pid: 4112719
[2025-11-24 13:22:38] 2025-11-24 21:21:33,051 | INFO     | pgrp: 4112719
[2025-11-24 13:22:38] 2025-11-24 21:21:33,051 | INFO     | corecount: 10
[2025-11-24 13:22:38] 2025-11-24 21:21:33,051 | INFO     | event service: False
[2025-11-24 13:22:38] 2025-11-24 21:21:33,051 | INFO     | sizes: {0: 2298599, 1: 2298798, 2: 2298798, 13: 2298826, 18: 2299144, 23: 2299172, 75174: 2361907, 75175: 2361906, 75184: 2371775, 75186: 2371831, 75204: 2372077}
[2025-11-24 13:22:38] 2025-11-24 21:21:33,051 | INFO     | --------------------------------------------------
[2025-11-24 13:22:38] 2025-11-24 21:21:33,051 | INFO     | 
[2025-11-24 13:22:38] 2025-11-24 21:21:33,051 | INFO     | executing command: ls -lF /var/lib/multiboinc/boinc225/slots/1
[2025-11-24 13:22:38] 2025-11-24 21:21:33,131 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 13:22:38] 2025-11-24 21:21:33,131 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 13:22:38] 2025-11-24 21:21:33,131 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 13:22:38] 2025-11-24 21:21:33,131 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 13:22:38] 2025-11-24 21:21:33,132 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 13:22:38] 2025-11-24 21:21:33,132 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 13:22:38] 2025-11-24 21:21:33,132 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 13:22:38] 2025-11-24 21:21:33,132 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 13:22:38] 2025-11-24 21:21:33,132 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 13:22:38] 2025-11-24 21:21:33,132 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 13:22:38] 2025-11-24 21:21:33,132 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 13:22:38] 2025-11-24 21:21:33,132 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 13:22:38] 2025-11-24 21:21:33,132 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 13:22:38] 2025-11-24 21:21:33,132 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 13:22:38] 2025-11-24 21:21:33,132 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 13:22:38] 2025-11-24 21:21:33,132 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 13:22:38] 2025-11-24 21:21:33,132 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 13:22:38] 2025-11-24 21:21:33,133 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 13:22:38] 2025-11-24 21:21:33,133 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 13:22:38] 2025-11-24 21:21:33,133 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 13:22:38] 2025-11-24 21:21:33,133 | INFO     | job 6895350370 has completed (purged errors)
[2025-11-24 13:22:38] 2025-11-24 21:21:33,133 | INFO     | overall cleanup function is called
[2025-11-24 13:22:38] 2025-11-24 21:21:34,203 | INFO     | --- collectZombieJob: --- 10, [4112719]
[2025-11-24 13:22:38] 2025-11-24 21:21:34,203 | INFO     | zombie collector waiting for pid 4112719
[2025-11-24 13:22:38] 2025-11-24 21:21:34,204 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 13:22:38] 2025-11-24 21:21:34,204 | INFO     | collected zombie processes
[2025-11-24 13:22:38] 2025-11-24 21:21:34,204 | INFO     | will attempt to kill all subprocesses of pid=4112719
[2025-11-24 13:22:38] 2025-11-24 21:21:35,128 | INFO     | process IDs to be killed: [4112719] (in reverse order)
[2025-11-24 13:22:38] 2025-11-24 21:21:35,408 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 13:22:38] 2025-11-24 21:21:35,408 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 13:22:38] 2025-11-24 21:21:35,424 | INFO     | did not find any defunct processes belonging to 4112719
[2025-11-24 13:22:38] 2025-11-24 21:21:35,440 | INFO     | did not find any defunct processes belonging to 4112719
[2025-11-24 13:22:38] 2025-11-24 21:21:35,445 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 13:22:38] 2025-11-24 21:21:35,446 | INFO     | ready for new job
[2025-11-24 13:22:38] 2025-11-24 21:21:35,446 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 13:22:38] 2025-11-24 21:21:35,455 | INFO     | ***************************************
[2025-11-24 13:22:38] 2025-11-24 21:21:35,458 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 13:22:38] 2025-11-24 21:21:35,458 | INFO     | ***************************************
[2025-11-24 13:22:38] 2025-11-24 21:21:35,458 | INFO     | 
[2025-11-24 13:22:38] 2025-11-24 21:21:35,460 | INFO     | architecture information:
[2025-11-24 13:22:38] 2025-11-24 21:21:35,461 | INFO     | executing command: cat /etc/os-release
[2025-11-24 13:22:38] 2025-11-24 21:21:35,495 | INFO     | cat /etc/os-release:
[2025-11-24 13:22:38] NAME="CentOS Linux"
[2025-11-24 13:22:38] VERSION="7 (Core)"
[2025-11-24 13:22:38] ID="centos"
[2025-11-24 13:22:38] ID_LIKE="rhel fedora"
[2025-11-24 13:22:38] VERSION_ID="7"
[2025-11-24 13:22:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 13:22:38] ANSI_COLOR="0;31"
[2025-11-24 13:22:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 13:22:38] HOME_URL="https://www.centos.org/"
[2025-11-24 13:22:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 13:22:38] 
[2025-11-24 13:22:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 13:22:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 13:22:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 13:22:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 13:22:38] 
[2025-11-24 13:22:38] 2025-11-24 21:21:35,495 | INFO     | ***************************************
[2025-11-24 13:22:38] 2025-11-24 21:21:36,000 | INFO     | executing command: df -mP /var/lib/multiboinc/boinc225/slots/1
[2025-11-24 13:22:38] 2025-11-24 21:21:36,041 | INFO     | sufficient remaining disk space (68121788416 B)
[2025-11-24 13:22:38] 2025-11-24 21:21:36,041 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 13:22:38] 2025-11-24 21:21:36,041 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 13:22:38] 2025-11-24 21:21:36,042 | INFO     | update_server=False
[2025-11-24 13:22:38] 2025-11-24 21:21:36,042 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 13:22:38] 2025-11-24 21:21:36,353 | INFO     | all data control threads have been joined
[2025-11-24 13:22:38] 2025-11-24 21:21:36,552 | INFO     | all job control threads have been joined
[2025-11-24 13:22:38] 2025-11-24 21:21:36,637 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 13:22:38] 2025-11-24 21:21:36,638 | INFO     | aborting loop
[2025-11-24 13:22:38] 2025-11-24 21:21:36,664 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 13:22:38] 2025-11-24 21:21:37,046 | INFO     | [job] retrieve thread has finished
[2025-11-24 13:22:38] 2025-11-24 21:21:37,178 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 13:22:38] 2025-11-24 21:21:37,268 | INFO     | all payload control threads have been joined
[2025-11-24 13:22:38] 2025-11-24 21:21:37,358 | INFO     | [data] control thread has finished
[2025-11-24 13:22:38] 2025-11-24 21:21:37,478 | INFO     | [data] copytool_in thread has finished
[2025-11-24 13:22:38] 2025-11-24 21:21:37,479 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 13:22:38] 2025-11-24 21:21:37,479 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 13:22:38] 2025-11-24 21:21:37,557 | INFO     | [job] control thread has finished
[2025-11-24 13:22:38] 2025-11-24 21:21:37,642 | INFO     | [job] job monitor thread has finished
[2025-11-24 13:22:38] 2025-11-24 21:21:37,753 | INFO     | [payload] failed_post thread has finished
[2025-11-24 13:22:38] 2025-11-24 21:21:37,989 | INFO     | [job] validate thread has finished
[2025-11-24 13:22:38] 2025-11-24 21:21:38,067 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 13:22:38] 2025-11-24 21:21:38,273 | INFO     | [payload] control thread has finished
[2025-11-24 13:22:38] 2025-11-24 21:21:38,302 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 13:22:38] 2025-11-24 21:21:38,453 | INFO     | [payload] validate_post thread has finished
[2025-11-24 13:22:38] 2025-11-24 21:21:38,669 | INFO     | [data] copytool_out thread has finished
[2025-11-24 13:22:38] 2025-11-24 21:21:39,072 | INFO     | [job] queue monitor thread has finished
[2025-11-24 13:22:38] 2025-11-24 21:21:39,341 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 13:22:38] 2025-11-24 21:21:43,346 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 13:22:38] 2025-11-24 21:22:06,693 | INFO     | PID=4105944 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 13:22:38] 2025-11-24 21:22:06,693 | INFO     | .. there are 11 such processes running
[2025-11-24 13:22:38] 2025-11-24 21:22:06,694 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 13:22:38] 2025-11-24 21:22:06,694 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 13:22:38] 2025-11-24 21:22:06,694 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 13:22:38] 2025-11-24 21:22:32,258 | INFO     | [monitor] cgroup control has ended
[2025-11-24 13:22:38] 2025-11-24 21:22:32,652 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 129328465430336)>', '<ExcThread(monitor, started 129328192919296)>']
[2025-11-24 13:22:38] 2025-11-24 21:22:32,834 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 13:22:38] 2025-11-24 21:22:32,834 | INFO     | [monitor] control thread has ended
[2025-11-24 13:22:38] 2025-11-24 21:22:37,677 | INFO     | all workflow threads have been joined
[2025-11-24 13:22:38] 2025-11-24 21:22:37,677 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 13:22:38] 2025-11-24 21:22:37,678 | INFO     | traces error code: 0
[2025-11-24 13:22:38] 2025-11-24 21:22:37,678 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 13:22:38] 2025-11-24 21:22:38,110 [wrapper] ==== pilot stdout END ====
[2025-11-24 13:22:38] 2025-11-24 21:22:38,123 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 13:22:38] 2025-11-24 21:22:38,134 [wrapper] pilotpid: 4105944
[2025-11-24 13:22:38] 2025-11-24 21:22:38,148 [wrapper] Pilot exit status: 0
[2025-11-24 13:22:38] 2025-11-24 21:22:38,205 [wrapper] pandaids: 6895350370
[2025-11-24 13:22:38] 2025-11-24 21:22:38,377 [wrapper] cleanup supervisor_pilot 1250469 4105945
[2025-11-24 13:22:38] 2025-11-24 21:22:38,384 [wrapper] Test setup, not cleaning
[2025-11-24 13:22:38] 2025-11-24 21:22:38,392 [wrapper] apfmon messages muted
[2025-11-24 13:22:38] 2025-11-24 21:22:38,417 [wrapper] ==== wrapper stdout END ====
[2025-11-24 13:22:38] 2025-11-24 21:22:38,429 [wrapper] ==== wrapper stderr END ====
[2025-11-24 13:22:38]  *** Error codes and diagnostics ***
[2025-11-24 13:22:38]     "exeErrorCode": 0,
[2025-11-24 13:22:38]     "exeErrorDiag": "",
[2025-11-24 13:22:38]     "pilotErrorCode": 0,
[2025-11-24 13:22:38]     "pilotErrorDiag": "",
[2025-11-24 13:22:38]  *** Listing of results directory ***
[2025-11-24 13:22:38] total 1333804
[2025-11-24 13:22:38] -rw-r--r-- 1 root root    576529 Nov 22 12:41 pilot3.tar.gz
[2025-11-24 13:22:38] -rw-r--r-- 1 root root      5112 Nov 22 13:08 queuedata.json
[2025-11-24 13:22:38] -rwx------ 1 4871 1028     36292 Nov 22 13:08 runpilot2-wrapper.sh
[2025-11-24 13:22:38] -rw-r--r-- 1 root root       100 Nov 23 16:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 13:22:38] -rwxr-xr-x 1 root root      7986 Nov 23 16:26 run_atlas
[2025-11-24 13:22:38] -rw-r--r-- 1 root root       105 Nov 23 16:26 job.xml
[2025-11-24 13:22:38] -rw-r--r-- 2 root root 413033286 Nov 23 16:26 EVNT.47483658._000508.pool.root.1
[2025-11-24 13:22:38] drwxrwx--x 2 root root      4096 Nov 23 16:26 shared
[2025-11-24 13:22:38] -rw-r--r-- 2 root root    590103 Nov 23 16:26 input.tar.gz
[2025-11-24 13:22:38] -rw-r--r-- 2 root root     15847 Nov 23 16:26 start_atlas.sh
[2025-11-24 13:22:38] -rw-r--r-- 1 root root         0 Nov 23 16:26 boinc_setup_complete
[2025-11-24 13:22:38] -rw-r--r-- 1 root root         0 Nov 23 16:26 boinc_lockfile
[2025-11-24 13:22:38] -rw-r--r-- 1 root root      2785 Nov 23 16:26 pandaJob.out
[2025-11-24 13:22:38] -rw------- 1 root root    989786 Nov 23 16:27 agis_schedconf.cvmfs.json
[2025-11-24 13:22:38] drwxr-xr-x 5  320  320      4096 Nov 23 16:27 pilot3
[2025-11-24 13:22:38] -rw-r--r-- 1 root root      9244 Nov 24 05:06 init_data.xml
[2025-11-24 13:22:38] -rw-r--r-- 1 root root       533 Nov 24 12:55 boinc_task_state.xml
[2025-11-24 13:22:38] -rw------- 1 root root 923076456 Nov 24 13:19 HITS.47556137._005037.pool.root.1
[2025-11-24 13:22:38] -rw------- 1 root root      1042 Nov 24 13:20 memory_monitor_summary.json
[2025-11-24 13:22:38] -rw------- 1 root root   1516227 Nov 24 13:21 agis_ddmendpoints.agis.ALL.json
[2025-11-24 13:22:38] -rw------- 1 root root   2582570 Nov 24 13:21 log.47556137._005037.job.log.tgz.1
[2025-11-24 13:22:38] -rw------- 1 root root      8580 Nov 24 13:21 heartbeat.json
[2025-11-24 13:22:38] -rw------- 1 root root        95 Nov 24 13:22 pilot_heartbeat.json
[2025-11-24 13:22:38] -rw-r--r-- 1 root root      8192 Nov 24 13:22 boinc_mmap_file
[2025-11-24 13:22:38] -rw-r--r-- 1 root root        29 Nov 24 13:22 wrapper_checkpoint.txt
[2025-11-24 13:22:38] -rw------- 1 root root      4838 Nov 24 13:22 pilotlog.txt
[2025-11-24 13:22:38] -rw------- 1 root root  10307409 Nov 24 13:22 log.47556137._005037.job.log.1
[2025-11-24 13:22:38] -rw------- 1 root root       353 Nov 24 13:22 output.list
[2025-11-24 13:22:38] -rw-r--r-- 1 root root       620 Nov 24 13:22 runtime_log
[2025-11-24 13:22:38] -rw------- 1 root root  12912640 Nov 24 13:22 result.tar.gz
[2025-11-24 13:22:38] -rw-r--r-- 1 root root      9021 Nov 24 13:22 runtime_log.err
[2025-11-24 13:22:38] -rw------- 1 root root       659 Nov 24 13:22 pBqKDmx19g8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmoPKKDmveKNrn.diag
[2025-11-24 13:22:38] -rw-r--r-- 1 root root     21924 Nov 24 13:22 stderr.txt
[2025-11-24 13:22:38] HITS file was successfully produced:
[2025-11-24 13:22:38] -rw------- 1 root root 923076456 Nov 24 13:19 shared/HITS.pool.root.1
[2025-11-24 13:22:38]  *** Contents of shared directory: ***
[2025-11-24 13:22:38] total 1318016
[2025-11-24 13:22:38] -rw-r--r-- 2 root root 413033286 Nov 23 16:26 ATLAS.root_0
[2025-11-24 13:22:38] -rw-r--r-- 2 root root    590103 Nov 23 16:26 input.tar.gz
[2025-11-24 13:22:38] -rw-r--r-- 2 root root     15847 Nov 23 16:26 start_atlas.sh
[2025-11-24 13:22:38] -rw------- 1 root root 923076456 Nov 24 13:19 HITS.pool.root.1
[2025-11-24 13:22:38] -rw------- 1 root root  12912640 Nov 24 13:22 result.tar.gz
13:22:40 (4102065): run_atlas exited; CPU time 219689.996042
13:22:40 (4102065): called boinc_finish(0)

</stderr_txt>
]]>

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