Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
02:26:50 (500981): wrapper (7.7.26015): starting
02:26:50 (500981): wrapper: running run_atlas (--nthreads 10)
[2025-11-24 02:26:50] Arguments: --nthreads 10
[2025-11-24 02:26:50] Threads: 10
[2025-11-24 02:26:50] Checking for CVMFS
[2025-11-24 02:26:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 02:26:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 02:26:50] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 02:26:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 02:26:51] 2.13.3.0 7351 8331 51396 153242 2 56 2731672 4096001 10543 130560 0 25580741 99.978 592636 744 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-24 02:26:51] CVMFS is ok
[2025-11-24 02:26:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 02:26:51] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-24 02:26:51] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-24 02:26:51] Further information can be found at the LHC@home message board.
[2025-11-24 02:26:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 02:26:51] Checking for apptainer binary...
[2025-11-24 02:26:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 02:26:51] Running /usr/bin/apptainer --version
[2025-11-24 02:26:51] apptainer version 1.4.2
[2025-11-24 02:26:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 02:26:52] 3950x-linux
[2025-11-24 02:26:52] apptainer works
[2025-11-24 02:26:52] Set ATHENA_PROC_NUMBER=10
[2025-11-24 02:26:52] Set ATHENA_CORE_NUMBER=10
[2025-11-24 02:26:52] Starting ATLAS job with PandaID=6895350365
[2025-11-24 02:26:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/multiboinc/boinc225/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 00:29:46]  *** The last 200 lines of the pilot log: ***
[2025-11-25 00:29:46] 2025-11-25 08:28:33,160 | INFO     | time since job start (79267s) is within the limit (172800.0s)
[2025-11-25 00:29:46] 2025-11-25 08:28:35,165 | INFO     | time since job start (79269s) is within the limit (172800.0s)
[2025-11-25 00:29:46] 2025-11-25 08:28:35,439 | INFO     | monitor loop #5162: job 0:6895350365 is in state 'finished'
[2025-11-25 00:29:46] 2025-11-25 08:28:35,439 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 00:29:46] 2025-11-25 08:28:37,170 | INFO     | time since job start (79271s) is within the limit (172800.0s)
[2025-11-25 00:29:46] 2025-11-25 08:28:37,942 | INFO     | monitor loop #5163: job 0:6895350365 is in state 'finished'
[2025-11-25 00:29:46] 2025-11-25 08:28:37,942 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 00:29:46] 2025-11-25 08:28:39,178 | INFO     | time since job start (79273s) is within the limit (172800.0s)
[2025-11-25 00:29:46] 2025-11-25 08:28:40,447 | INFO     | monitor loop #5164: job 0:6895350365 is in state 'finished'
[2025-11-25 00:29:46] 2025-11-25 08:28:40,448 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 00:29:46] 2025-11-25 08:28:41,187 | INFO     | time since job start (79275s) is within the limit (172800.0s)
[2025-11-25 00:29:46] 2025-11-25 08:28:42,952 | INFO     | monitor loop #5165: job 0:6895350365 is in state 'finished'
[2025-11-25 00:29:46] 2025-11-25 08:28:42,952 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 00:29:46] 2025-11-25 08:28:43,195 | INFO     | time since job start (79277s) is within the limit (172800.0s)
[2025-11-25 00:29:46] 2025-11-25 08:28:45,086 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 00:29:46] 2025-11-25 08:28:45,094 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3249.7851250000003
[2025-11-25 00:29:46] 2025-11-25 08:28:45,105 | INFO     | using path: /var/lib/multiboinc/boinc225/slots/2/PanDA_Pilot-6895350365/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 00:29:46] 2025-11-25 08:28:45,105 | INFO     | extracted standard info from prmon json
[2025-11-25 00:29:46] 2025-11-25 08:28:45,105 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 00:29:46] 2025-11-25 08:28:45,106 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 00:29:46] 2025-11-25 08:28:45,139 | INFO     | fitting pss+swap vs Time
[2025-11-25 00:29:46] 2025-11-25 08:28:45,143 | INFO     | sum of square deviations: 678114839091.4489
[2025-11-25 00:29:46] 2025-11-25 08:28:45,206 | INFO     | time since job start (79279s) is within the limit (172800.0s)
[2025-11-25 00:29:46] 2025-11-25 08:28:45,206 | INFO     | sum of deviations: 2595083532772.3955
[2025-11-25 00:29:46] 2025-11-25 08:28:45,206 | INFO     | mean x: 1764019683.9237287
[2025-11-25 00:29:46] 2025-11-25 08:28:45,206 | INFO     | mean y: 3134161.8929121727
[2025-11-25 00:29:46] 2025-11-25 08:28:45,206 | INFO     | intersect: -6747607997.606545
[2025-11-25 00:29:46] 2025-11-25 08:28:45,209 | INFO     | chi2: 16.181143251954175
[2025-11-25 00:29:46] 2025-11-25 08:28:45,210 | INFO     | sum of square deviations: 670309899250.1127
[2025-11-25 00:29:46] 2025-11-25 08:28:45,276 | INFO     | sum of deviations: 3065324639606.909
[2025-11-25 00:29:46] 2025-11-25 08:28:45,276 | INFO     | mean x: 1764019531.4369683
[2025-11-25 00:29:46] 2025-11-25 08:28:45,276 | INFO     | mean y: 3143347.5081206495
[2025-11-25 00:29:46] 2025-11-25 08:28:45,276 | INFO     | intersect: -8063711312.568966
[2025-11-25 00:29:46] 2025-11-25 08:28:45,280 | INFO     | chi2: 12.998484457328018
[2025-11-25 00:29:46] 2025-11-25 08:28:45,280 | INFO     | current chi2=12.998484457328018 (change=19.66893652116819 %)
[2025-11-25 00:29:46] 2025-11-25 08:28:45,280 | INFO     | right removable region: 1292
[2025-11-25 00:29:46] 2025-11-25 08:28:45,282 | INFO     | sum of square deviations: 670307188410.1139
[2025-11-25 00:29:46] 2025-11-25 08:28:45,352 | INFO     | sum of deviations: 2077563040212.124
[2025-11-25 00:29:46] 2025-11-25 08:28:45,353 | INFO     | mean x: 1764019836.4369683
[2025-11-25 00:29:46] 2025-11-25 08:28:45,353 | INFO     | mean y: 3144268.449342614
[2025-11-25 00:29:46] 2025-11-25 08:28:45,353 | INFO     | intersect: -5464292867.46305
[2025-11-25 00:29:46] 2025-11-25 08:28:45,354 | INFO     | chi2: 12.75753123259039
[2025-11-25 00:29:46] 2025-11-25 08:28:45,354 | INFO     | current chi2=12.75753123259039 (change=21.158035412302034 %)
[2025-11-25 00:29:46] 2025-11-25 08:28:45,354 | INFO     | left removable region: 10
[2025-11-25 00:29:46] 2025-11-25 08:28:45,358 | INFO     | sum of square deviations: 653344977601.5579
[2025-11-25 00:29:46] 2025-11-25 08:28:45,444 | INFO     | sum of deviations: 2282564344669.2773
[2025-11-25 00:29:46] 2025-11-25 08:28:45,447 | INFO     | mean x: 1764019805.9664586
[2025-11-25 00:29:46] 2025-11-25 08:28:45,447 | INFO     | mean y: 3162321.9134165365
[2025-11-25 00:29:46] 2025-11-25 08:28:45,448 | INFO     | intersect: -6159720765.013759
[2025-11-25 00:29:46] 2025-11-25 08:28:45,452 | INFO     | chi2: 7.499850445645222
[2025-11-25 00:29:46] 2025-11-25 08:28:45,452 | INFO     | current memory leak: 3.49 B/s (using 1282 data points, chi2=7.50)
[2025-11-25 00:29:46] 2025-11-25 08:28:45,453 | INFO     | could have reported an average CPU frequency of 3249 MHz (47 samples)
[2025-11-25 00:29:46] 2025-11-25 08:28:45,453 | INFO     | ..............................
[2025-11-25 00:29:46] 2025-11-25 08:28:45,453 | INFO     | . Timing measurements:
[2025-11-25 00:29:46] 2025-11-25 08:28:45,453 | INFO     | . get job = 0 s
[2025-11-25 00:29:46] 2025-11-25 08:28:45,453 | INFO     | . initial setup = 4 s
[2025-11-25 00:29:46] 2025-11-25 08:28:45,453 | INFO     | . payload setup = 21 s
[2025-11-25 00:29:46] 2025-11-25 08:28:45,453 | INFO     | . stage-in = 0 s
[2025-11-25 00:29:46] 2025-11-25 08:28:45,453 | INFO     | . payload execution = 79183 s
[2025-11-25 00:29:46] 2025-11-25 08:28:45,453 | INFO     | . stage-out = 8 s
[2025-11-25 00:29:46] 2025-11-25 08:28:45,453 | INFO     | . log creation = 2 s
[2025-11-25 00:29:46] 2025-11-25 08:28:45,454 | INFO     | ..............................
[2025-11-25 00:29:46] 2025-11-25 08:28:45,456 | INFO     | monitor loop #5166: job 0:6895350365 is in state 'finished'
[2025-11-25 00:29:46] 2025-11-25 08:28:45,456 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 00:29:46] 2025-11-25 08:28:45,980 | INFO     | 
[2025-11-25 00:29:46] 2025-11-25 08:28:45,980 | INFO     | job summary report
[2025-11-25 00:29:46] 2025-11-25 08:28:45,981 | INFO     | --------------------------------------------------
[2025-11-25 00:29:46] 2025-11-25 08:28:45,981 | INFO     | PanDA job id: 6895350365
[2025-11-25 00:29:46] 2025-11-25 08:28:45,981 | INFO     | task id: 47556137
[2025-11-25 00:29:46] 2025-11-25 08:28:45,981 | INFO     | errors: (none)
[2025-11-25 00:29:46] 2025-11-25 08:28:45,981 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 00:29:46] 2025-11-25 08:28:45,981 | INFO     | pilot state: finished 
[2025-11-25 00:29:46] 2025-11-25 08:28:45,981 | INFO     | transexitcode: 0
[2025-11-25 00:29:46] 2025-11-25 08:28:45,981 | INFO     | exeerrorcode: 0
[2025-11-25 00:29:46] 2025-11-25 08:28:45,981 | INFO     | exeerrordiag: 
[2025-11-25 00:29:46] 2025-11-25 08:28:45,981 | INFO     | exitcode: 0
[2025-11-25 00:29:46] 2025-11-25 08:28:45,981 | INFO     | exitmsg: OK
[2025-11-25 00:29:46] 2025-11-25 08:28:45,981 | INFO     | cpuconsumptiontime: 222935 s
[2025-11-25 00:29:46] 2025-11-25 08:28:45,981 | INFO     | nevents: 1000
[2025-11-25 00:29:46] 2025-11-25 08:28:45,981 | INFO     | neventsw: 0
[2025-11-25 00:29:46] 2025-11-25 08:28:45,981 | INFO     | pid: 511650
[2025-11-25 00:29:46] 2025-11-25 08:28:45,982 | INFO     | pgrp: 511650
[2025-11-25 00:29:46] 2025-11-25 08:28:45,982 | INFO     | corecount: 10
[2025-11-25 00:29:46] 2025-11-25 08:28:45,982 | INFO     | event service: False
[2025-11-25 00:29:46] 2025-11-25 08:28:45,982 | INFO     | sizes: {0: 2298599, 1: 2298627, 2: 2298798, 12: 2298826, 17: 2299116, 23: 2299144, 79208: 2363361, 79217: 2373174, 79220: 2373230, 79240: 2373476}
[2025-11-25 00:29:46] 2025-11-25 08:28:45,982 | INFO     | --------------------------------------------------
[2025-11-25 00:29:46] 2025-11-25 08:28:45,982 | INFO     | 
[2025-11-25 00:29:46] 2025-11-25 08:28:45,982 | INFO     | executing command: ls -lF /var/lib/multiboinc/boinc225/slots/2
[2025-11-25 00:29:46] 2025-11-25 08:28:46,073 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 00:29:46] 2025-11-25 08:28:46,073 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 00:29:46] 2025-11-25 08:28:46,073 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 00:29:46] 2025-11-25 08:28:46,073 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 00:29:46] 2025-11-25 08:28:46,073 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 00:29:46] 2025-11-25 08:28:46,073 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 00:29:46] 2025-11-25 08:28:46,073 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 00:29:46] 2025-11-25 08:28:46,073 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 00:29:46] 2025-11-25 08:28:46,074 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 00:29:46] 2025-11-25 08:28:46,074 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 00:29:46] 2025-11-25 08:28:46,074 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 00:29:46] 2025-11-25 08:28:46,074 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 00:29:46] 2025-11-25 08:28:46,074 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 00:29:46] 2025-11-25 08:28:46,074 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 00:29:46] 2025-11-25 08:28:46,074 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 00:29:46] 2025-11-25 08:28:46,074 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 00:29:46] 2025-11-25 08:28:46,074 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 00:29:46] 2025-11-25 08:28:46,074 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 00:29:46] 2025-11-25 08:28:46,074 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 00:29:46] 2025-11-25 08:28:46,074 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 00:29:46] 2025-11-25 08:28:46,075 | INFO     | job 6895350365 has completed (purged errors)
[2025-11-25 00:29:46] 2025-11-25 08:28:46,075 | INFO     | overall cleanup function is called
[2025-11-25 00:29:46] 2025-11-25 08:28:47,135 | INFO     | --- collectZombieJob: --- 10, [511650]
[2025-11-25 00:29:46] 2025-11-25 08:28:47,136 | INFO     | zombie collector waiting for pid 511650
[2025-11-25 00:29:46] 2025-11-25 08:28:47,136 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 00:29:46] 2025-11-25 08:28:47,136 | INFO     | collected zombie processes
[2025-11-25 00:29:46] 2025-11-25 08:28:47,136 | INFO     | will attempt to kill all subprocesses of pid=511650
[2025-11-25 00:29:46] 2025-11-25 08:28:47,939 | INFO     | process IDs to be killed: [511650] (in reverse order)
[2025-11-25 00:29:46] 2025-11-25 08:28:48,109 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 00:29:46] 2025-11-25 08:28:48,109 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 00:29:46] 2025-11-25 08:28:48,126 | INFO     | did not find any defunct processes belonging to 511650
[2025-11-25 00:29:46] 2025-11-25 08:28:48,144 | INFO     | did not find any defunct processes belonging to 511650
[2025-11-25 00:29:46] 2025-11-25 08:28:48,145 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 00:29:46] 2025-11-25 08:28:48,145 | INFO     | ready for new job
[2025-11-25 00:29:46] 2025-11-25 08:28:48,145 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 00:29:46] 2025-11-25 08:28:48,157 | INFO     | ***************************************
[2025-11-25 00:29:46] 2025-11-25 08:28:48,160 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 00:29:46] 2025-11-25 08:28:48,160 | INFO     | ***************************************
[2025-11-25 00:29:46] 2025-11-25 08:28:48,161 | INFO     | 
[2025-11-25 00:29:46] 2025-11-25 08:28:48,163 | INFO     | architecture information:
[2025-11-25 00:29:46] 2025-11-25 08:28:48,163 | INFO     | executing command: cat /etc/os-release
[2025-11-25 00:29:46] 2025-11-25 08:28:48,230 | INFO     | cat /etc/os-release:
[2025-11-25 00:29:46] NAME="CentOS Linux"
[2025-11-25 00:29:46] VERSION="7 (Core)"
[2025-11-25 00:29:46] ID="centos"
[2025-11-25 00:29:46] ID_LIKE="rhel fedora"
[2025-11-25 00:29:46] VERSION_ID="7"
[2025-11-25 00:29:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 00:29:46] ANSI_COLOR="0;31"
[2025-11-25 00:29:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 00:29:46] HOME_URL="https://www.centos.org/"
[2025-11-25 00:29:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 00:29:46] 
[2025-11-25 00:29:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 00:29:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 00:29:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 00:29:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 00:29:46] 
[2025-11-25 00:29:46] 2025-11-25 08:28:48,231 | INFO     | ***************************************
[2025-11-25 00:29:46] 2025-11-25 08:28:48,734 | INFO     | executing command: df -mP /var/lib/multiboinc/boinc225/slots/2
[2025-11-25 00:29:46] 2025-11-25 08:28:48,813 | INFO     | sufficient remaining disk space (62347280384 B)
[2025-11-25 00:29:46] 2025-11-25 08:28:48,813 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 00:29:46] 2025-11-25 08:28:48,813 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 00:29:46] 2025-11-25 08:28:48,813 | INFO     | update_server=False
[2025-11-25 00:29:46] 2025-11-25 08:28:48,813 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 00:29:46] 2025-11-25 08:28:48,967 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 00:29:46] 2025-11-25 08:28:48,968 | INFO     | aborting loop
[2025-11-25 00:29:46] 2025-11-25 08:28:49,022 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 00:29:46] 2025-11-25 08:28:49,468 | INFO     | all job control threads have been joined
[2025-11-25 00:29:46] 2025-11-25 08:28:49,569 | INFO     | all data control threads have been joined
[2025-11-25 00:29:46] 2025-11-25 08:28:49,822 | INFO     | [job] retrieve thread has finished
[2025-11-25 00:29:46] 2025-11-25 08:28:49,972 | INFO     | [job] job monitor thread has finished
[2025-11-25 00:29:46] 2025-11-25 08:28:49,991 | INFO     | all payload control threads have been joined
[2025-11-25 00:29:46] 2025-11-25 08:28:50,283 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 00:29:46] 2025-11-25 08:28:50,413 | INFO     | [payload] validate_post thread has finished
[2025-11-25 00:29:46] 2025-11-25 08:28:50,429 | INFO     | [data] copytool_in thread has finished
[2025-11-25 00:29:46] 2025-11-25 08:28:50,430 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 00:29:46] 2025-11-25 08:28:50,473 | INFO     | [job] control thread has finished
[2025-11-25 00:29:46] 2025-11-25 08:28:50,574 | INFO     | [data] control thread has finished
[2025-11-25 00:29:46] 2025-11-25 08:28:50,577 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 00:29:46] 2025-11-25 08:28:50,578 | INFO     | [job] validate thread has finished
[2025-11-25 00:29:46] 2025-11-25 08:28:50,719 | INFO     | [payload] failed_post thread has finished
[2025-11-25 00:29:46] 2025-11-25 08:28:50,722 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 00:29:46] 2025-11-25 08:28:50,944 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 00:29:46] 2025-11-25 08:28:50,996 | INFO     | [payload] control thread has finished
[2025-11-25 00:29:46] 2025-11-25 08:28:51,027 | INFO     | [data] copytool_out thread has finished
[2025-11-25 00:29:46] 2025-11-25 08:28:51,233 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 00:29:46] 2025-11-25 08:28:51,727 | INFO     | [job] queue monitor thread has finished
[2025-11-25 00:29:46] 2025-11-25 08:28:54,288 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 00:29:46] 2025-11-25 08:29:19,130 | INFO     | PID=504885 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 00:29:46] 2025-11-25 08:29:19,130 | INFO     | .. there are 12 such processes running
[2025-11-25 00:29:46] 2025-11-25 08:29:19,131 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 00:29:46] 2025-11-25 08:29:19,131 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 00:29:46] 2025-11-25 08:29:19,131 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 00:29:46] 2025-11-25 08:29:38,744 | INFO     | [monitor] cgroup control has ended
[2025-11-25 00:29:46] 2025-11-25 08:29:40,496 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 126107483162432)>', '<ExcThread(monitor, started 126106992625408)>']
[2025-11-25 00:29:46] 2025-11-25 08:29:41,255 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 00:29:46] 2025-11-25 08:29:41,255 | INFO     | [monitor] control thread has ended
[2025-11-25 00:29:46] 2025-11-25 08:29:45,521 | INFO     | all workflow threads have been joined
[2025-11-25 00:29:46] 2025-11-25 08:29:45,521 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 00:29:46] 2025-11-25 08:29:45,522 | INFO     | traces error code: 0
[2025-11-25 00:29:46] 2025-11-25 08:29:45,522 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 00:29:46] 2025-11-25 08:29:45,996 [wrapper] ==== pilot stdout END ====
[2025-11-25 00:29:46] 2025-11-25 08:29:46,013 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 00:29:46] 2025-11-25 08:29:46,028 [wrapper] pilotpid: 504885
[2025-11-25 00:29:46] 2025-11-25 08:29:46,047 [wrapper] Pilot exit status: 0
[2025-11-25 00:29:46] 2025-11-25 08:29:46,111 [wrapper] pandaids: 6895350365
[2025-11-25 00:29:46] 2025-11-25 08:29:46,290 [wrapper] cleanup supervisor_pilot 1966044 504886
[2025-11-25 00:29:46] 2025-11-25 08:29:46,305 [wrapper] Test setup, not cleaning
[2025-11-25 00:29:46] 2025-11-25 08:29:46,318 [wrapper] apfmon messages muted
[2025-11-25 00:29:46] 2025-11-25 08:29:46,336 [wrapper] ==== wrapper stdout END ====
[2025-11-25 00:29:46] 2025-11-25 08:29:46,349 [wrapper] ==== wrapper stderr END ====
[2025-11-25 00:29:46]  *** Error codes and diagnostics ***
[2025-11-25 00:29:46]     "exeErrorCode": 0,
[2025-11-25 00:29:46]     "exeErrorDiag": "",
[2025-11-25 00:29:46]     "pilotErrorCode": 0,
[2025-11-25 00:29:46]     "pilotErrorDiag": "",
[2025-11-25 00:29:46]  *** Listing of results directory ***
[2025-11-25 00:29:46] total 1350968
[2025-11-25 00:29:46] -rw-r--r-- 1 root root    576529 Nov 22 12:41 pilot3.tar.gz
[2025-11-25 00:29:46] -rw-r--r-- 1 root root      5112 Nov 22 13:08 queuedata.json
[2025-11-25 00:29:46] -rwx------ 1 4871 1028     36292 Nov 22 13:08 runpilot2-wrapper.sh
[2025-11-25 00:29:46] -rw-r--r-- 1 root root       100 Nov 24 02:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 00:29:46] -rwxr-xr-x 1 root root      7986 Nov 24 02:26 run_atlas
[2025-11-25 00:29:46] -rw-r--r-- 1 root root       105 Nov 24 02:26 job.xml
[2025-11-25 00:29:46] -rw-r--r-- 2 root root 413033286 Nov 24 02:26 EVNT.47483658._000508.pool.root.1
[2025-11-25 00:29:46] drwxrwx--x 2 root root      4096 Nov 24 02:26 shared
[2025-11-25 00:29:46] -rw-r--r-- 2 root root    590097 Nov 24 02:26 input.tar.gz
[2025-11-25 00:29:46] -rw-r--r-- 2 root root     15847 Nov 24 02:26 start_atlas.sh
[2025-11-25 00:29:46] -rw-r--r-- 1 root root         0 Nov 24 02:26 boinc_setup_complete
[2025-11-25 00:29:46] -rw-r--r-- 1 root root         0 Nov 24 02:26 boinc_lockfile
[2025-11-25 00:29:46] -rw-r--r-- 1 root root      2785 Nov 24 02:26 pandaJob.out
[2025-11-25 00:29:46] -rw------- 1 root root    989824 Nov 24 02:27 agis_schedconf.cvmfs.json
[2025-11-25 00:29:46] drwxr-xr-x 5  320  320      4096 Nov 24 02:27 pilot3
[2025-11-25 00:29:46] -rw-r--r-- 1 root root      9242 Nov 24 05:06 init_data.xml
[2025-11-25 00:29:46] -rw-r--r-- 1 root root       533 Nov 24 23:54 boinc_task_state.xml
[2025-11-25 00:29:46] -rw------- 1 root root 939563366 Nov 25 00:26 HITS.47556137._005032.pool.root.1
[2025-11-25 00:29:46] -rw------- 1 root root      1049 Nov 25 00:28 memory_monitor_summary.json
[2025-11-25 00:29:46] -rw------- 1 root root   1516227 Nov 25 00:28 agis_ddmendpoints.agis.ALL.json
[2025-11-25 00:29:46] -rw------- 1 root root   2630880 Nov 25 00:28 log.47556137._005032.job.log.tgz.1
[2025-11-25 00:29:46] -rw------- 1 root root      8603 Nov 25 00:28 heartbeat.json
[2025-11-25 00:29:46] -rw------- 1 root root        95 Nov 25 00:29 pilot_heartbeat.json
[2025-11-25 00:29:46] -rw-r--r-- 1 root root      8192 Nov 25 00:29 boinc_mmap_file
[2025-11-25 00:29:46] -rw-r--r-- 1 root root        29 Nov 25 00:29 wrapper_checkpoint.txt
[2025-11-25 00:29:46] -rw------- 1 root root      4837 Nov 25 00:29 pilotlog.txt
[2025-11-25 00:29:46] -rw------- 1 root root  10808232 Nov 25 00:29 log.47556137._005032.job.log.1
[2025-11-25 00:29:46] -rw------- 1 root root       353 Nov 25 00:29 output.list
[2025-11-25 00:29:46] -rw-r--r-- 1 root root       620 Nov 25 00:29 runtime_log
[2025-11-25 00:29:46] -rw------- 1 root root  13455360 Nov 25 00:29 result.tar.gz
[2025-11-25 00:29:46] -rw-r--r-- 1 root root      9021 Nov 25 00:29 runtime_log.err
[2025-11-25 00:29:46] -rw------- 1 root root       663 Nov 25 00:29 QviKDmx19g8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmjPKKDmZtTPjm.diag
[2025-11-25 00:29:46] -rw-r--r-- 1 root root     21896 Nov 25 00:29 stderr.txt
[2025-11-25 00:29:46] HITS file was successfully produced:
[2025-11-25 00:29:46] -rw------- 1 root root 939563366 Nov 25 00:26 shared/HITS.pool.root.1
[2025-11-25 00:29:46]  *** Contents of shared directory: ***
[2025-11-25 00:29:46] total 1334644
[2025-11-25 00:29:46] -rw-r--r-- 2 root root 413033286 Nov 24 02:26 ATLAS.root_0
[2025-11-25 00:29:46] -rw-r--r-- 2 root root    590097 Nov 24 02:26 input.tar.gz
[2025-11-25 00:29:46] -rw-r--r-- 2 root root     15847 Nov 24 02:26 start_atlas.sh
[2025-11-25 00:29:46] -rw------- 1 root root 939563366 Nov 25 00:26 HITS.pool.root.1
[2025-11-25 00:29:46] -rw------- 1 root root  13455360 Nov 25 00:29 result.tar.gz
00:29:48 (500981): run_atlas exited; CPU time 223200.548792
00:29:48 (500981): called boinc_finish(0)

</stderr_txt>
]]>

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