Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:18 (1400312): wrapper (7.7.26015): starting
00:02:18 (1400312): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 00:02:18] Arguments: --nthreads 12
[2025-11-25 00:02:18] Threads: 12
[2025-11-25 00:02:18] Checking for CVMFS
[2025-11-25 00:02:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:02:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:02:20] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:02:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:02:22] 2.13.2.0 9369 31014 166424 153270 3 367 37475462 39288833 9816 16776704 0 21873363 99.632 20096434 37960 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 00:02:22] CVMFS is ok
[2025-11-25 00:02:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:02:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:02:22] Further information can be found at the LHC@home message board.
[2025-11-25 00:02:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:02:22] Checking for apptainer binary...
[2025-11-25 00:02:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:02:22] Running /usr/bin/apptainer --version
[2025-11-25 00:02:23] apptainer version 1.4.4-1.el9
[2025-11-25 00:02:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:02:24] c-210-23.aglt2.org
[2025-11-25 00:02:24] apptainer works
[2025-11-25 00:02:24] Set ATHENA_PROC_NUMBER=12
[2025-11-25 00:02:24] Set ATHENA_CORE_NUMBER=12
[2025-11-25 00:02:25] Starting ATLAS job with PandaID=6895350369
[2025-11-25 00:02:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 20:31:11]  *** The last 200 lines of the pilot log: ***
[2025-11-26 20:31:11] 2025-11-27 01:30:16,290 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:31:11] 2025-11-27 01:30:16,821 | INFO     | time since job start (159873s) is within the limit (172800.0s)
[2025-11-26 20:31:11] 2025-11-27 01:30:18,795 | INFO     | monitor loop #8387: job 0:6895350369 is in state 'finished'
[2025-11-26 20:31:11] 2025-11-27 01:30:18,796 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:31:11] 2025-11-27 01:30:18,841 | INFO     | time since job start (159875s) is within the limit (172800.0s)
[2025-11-26 20:31:11] 2025-11-27 01:30:20,668 | INFO     | PID=1406050 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 20:31:11] 2025-11-27 01:30:20,668 | INFO     | .. there are 9 such processes running
[2025-11-26 20:31:11] 2025-11-27 01:30:21,300 | INFO     | monitor loop #8388: job 0:6895350369 is in state 'finished'
[2025-11-26 20:31:11] 2025-11-27 01:30:21,301 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:31:11] 2025-11-27 01:30:21,670 | INFO     | time since job start (159878s) is within the limit (172800.0s)
[2025-11-26 20:31:11] 2025-11-27 01:30:23,681 | INFO     | time since job start (159880s) is within the limit (172800.0s)
[2025-11-26 20:31:11] 2025-11-27 01:30:23,805 | INFO     | monitor loop #8389: job 0:6895350369 is in state 'finished'
[2025-11-26 20:31:11] 2025-11-27 01:30:23,806 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:31:11] 2025-11-27 01:30:25,690 | INFO     | time since job start (159882s) is within the limit (172800.0s)
[2025-11-26 20:31:11] 2025-11-27 01:30:26,328 | INFO     | monitor loop #8390: job 0:6895350369 is in state 'finished'
[2025-11-26 20:31:11] 2025-11-27 01:30:26,329 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:31:11] 2025-11-27 01:30:27,398 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 20:31:11] 2025-11-27 01:30:27,414 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.0477749999995
[2025-11-26 20:31:11] 2025-11-27 01:30:27,428 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895350369/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 20:31:11] 2025-11-27 01:30:27,431 | INFO     | extracted standard info from prmon json
[2025-11-26 20:31:11] 2025-11-27 01:30:27,431 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 20:31:11] 2025-11-27 01:30:27,431 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 20:31:11] 2025-11-27 01:30:27,542 | INFO     | fitting pss+swap vs Time
[2025-11-26 20:31:11] 2025-11-27 01:30:27,554 | INFO     | sum of square deviations: 5540865494774.992
[2025-11-26 20:31:11] 2025-11-27 01:30:27,707 | INFO     | time since job start (159884s) is within the limit (172800.0s)
[2025-11-26 20:31:11] 2025-11-27 01:30:28,236 | INFO     | sum of deviations: 30517328440884.277
[2025-11-26 20:31:11] 2025-11-27 01:30:28,236 | INFO     | mean x: 1764127235.9988523
[2025-11-26 20:31:11] 2025-11-27 01:30:28,236 | INFO     | mean y: 3437019.409716909
[2025-11-26 20:31:11] 2025-11-27 01:30:28,237 | INFO     | intersect: -9712815851.780504
[2025-11-26 20:31:11] 2025-11-27 01:30:28,253 | INFO     | chi2: 74.91772712504631
[2025-11-26 20:31:11] 2025-11-27 01:30:28,266 | INFO     | sum of square deviations: 5509145471736.252
[2025-11-26 20:31:11] 2025-11-27 01:30:28,504 | INFO     | sum of deviations: 31639656882434.793
[2025-11-26 20:31:11] 2025-11-27 01:30:28,505 | INFO     | mean x: 1764127083.5017247
[2025-11-26 20:31:11] 2025-11-27 01:30:28,505 | INFO     | mean y: 3442414.497508624
[2025-11-26 20:31:11] 2025-11-27 01:30:28,505 | INFO     | intersect: -10128142584.548447
[2025-11-26 20:31:11] 2025-11-27 01:30:28,508 | INFO     | chi2: 71.12095581469289
[2025-11-26 20:31:11] 2025-11-27 01:30:28,508 | INFO     | current chi2=71.12095581469289 (change=5.067921113004633 %)
[2025-11-26 20:31:11] 2025-11-27 01:30:28,508 | INFO     | right removable region: 2608
[2025-11-26 20:31:11] 2025-11-27 01:30:28,511 | INFO     | sum of square deviations: 5509114373003.207
[2025-11-26 20:31:11] 2025-11-27 01:30:28,668 | INFO     | sum of deviations: 29151767658647.766
[2025-11-26 20:31:11] 2025-11-27 01:30:28,669 | INFO     | mean x: 1764127388.5707169
[2025-11-26 20:31:11] 2025-11-27 01:30:28,669 | INFO     | mean y: 3443581.2479877346
[2025-11-26 20:31:11] 2025-11-27 01:30:28,669 | INFO     | intersect: -9331529024.128458
[2025-11-26 20:31:11] 2025-11-27 01:30:28,672 | INFO     | chi2: 69.72854724384344
[2025-11-26 20:31:11] 2025-11-27 01:30:28,672 | INFO     | current chi2=69.72854724384344 (change=6.926504687657617 %)
[2025-11-26 20:31:11] 2025-11-27 01:30:28,672 | INFO     | left removable region: 10
[2025-11-26 20:31:11] 2025-11-27 01:30:28,676 | INFO     | sum of square deviations: 5439726183783.126
[2025-11-26 20:31:11] 2025-11-27 01:30:28,839 | INFO     | sum of deviations: 29178239673060.188
[2025-11-26 20:31:11] 2025-11-27 01:30:28,840 | INFO     | mean x: 1764127358.1466513
[2025-11-26 20:31:11] 2025-11-27 01:30:28,840 | INFO     | mean y: 3456271.621247113
[2025-11-26 20:31:11] 2025-11-27 01:30:28,840 | INFO     | intersect: -9459176429.131191
[2025-11-26 20:31:11] 2025-11-27 01:30:28,847 | INFO     | chi2: 60.67114327352888
[2025-11-26 20:31:11] 2025-11-27 01:30:28,847 | INFO     | current memory leak: 5.36 B/s (using 2598 data points, chi2=60.67)
[2025-11-26 20:31:11] 2025-11-27 01:30:28,853 | INFO     | could have reported an average CPU frequency of 2598 MHz (89 samples)
[2025-11-26 20:31:11] 2025-11-27 01:30:28,854 | INFO     | ..............................
[2025-11-26 20:31:11] 2025-11-27 01:30:28,854 | INFO     | . Timing measurements:
[2025-11-26 20:31:11] 2025-11-27 01:30:28,854 | INFO     | . get job = 1 s
[2025-11-26 20:31:11] 2025-11-27 01:30:28,854 | INFO     | . initial setup = 26 s
[2025-11-26 20:31:11] 2025-11-27 01:30:28,854 | INFO     | . payload setup = 120 s
[2025-11-26 20:31:11] 2025-11-27 01:30:28,854 | INFO     | . stage-in = 2 s
[2025-11-26 20:31:11] 2025-11-27 01:30:28,854 | INFO     | . payload execution = 159560 s
[2025-11-26 20:31:11] 2025-11-27 01:30:28,854 | INFO     | . stage-out = 5 s
[2025-11-26 20:31:11] 2025-11-27 01:30:28,854 | INFO     | . log creation = 1 s
[2025-11-26 20:31:11] 2025-11-27 01:30:28,855 | INFO     | ..............................
[2025-11-26 20:31:11] 2025-11-27 01:30:29,042 | INFO     | 
[2025-11-26 20:31:11] 2025-11-27 01:30:29,042 | INFO     | job summary report
[2025-11-26 20:31:11] 2025-11-27 01:30:29,042 | INFO     | --------------------------------------------------
[2025-11-26 20:31:11] 2025-11-27 01:30:29,042 | INFO     | PanDA job id: 6895350369
[2025-11-26 20:31:11] 2025-11-27 01:30:29,042 | INFO     | task id: 47556137
[2025-11-26 20:31:11] 2025-11-27 01:30:29,042 | INFO     | errors: (none)
[2025-11-26 20:31:11] 2025-11-27 01:30:29,042 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 20:31:11] 2025-11-27 01:30:29,042 | INFO     | pilot state: finished 
[2025-11-26 20:31:11] 2025-11-27 01:30:29,043 | INFO     | transexitcode: 0
[2025-11-26 20:31:11] 2025-11-27 01:30:29,043 | INFO     | exeerrorcode: 0
[2025-11-26 20:31:11] 2025-11-27 01:30:29,043 | INFO     | exeerrordiag: 
[2025-11-26 20:31:11] 2025-11-27 01:30:29,043 | INFO     | exitcode: 0
[2025-11-26 20:31:11] 2025-11-27 01:30:29,043 | INFO     | exitmsg: OK
[2025-11-26 20:31:11] 2025-11-27 01:30:29,043 | INFO     | cpuconsumptiontime: 308585 s
[2025-11-26 20:31:11] 2025-11-27 01:30:29,043 | INFO     | nevents: 1000
[2025-11-26 20:31:11] 2025-11-27 01:30:29,043 | INFO     | neventsw: 0
[2025-11-26 20:31:11] 2025-11-27 01:30:29,043 | INFO     | pid: 1420224
[2025-11-26 20:31:11] 2025-11-27 01:30:29,043 | INFO     | pgrp: 1420224
[2025-11-26 20:31:11] 2025-11-27 01:30:29,043 | INFO     | corecount: 12
[2025-11-26 20:31:11] 2025-11-27 01:30:29,044 | INFO     | event service: False
[2025-11-26 20:31:11] 2025-11-27 01:30:29,044 | INFO     | sizes: {0: 2283431, 1: 2284032, 2: 2284116, 4: 2284144, 5: 2284144, 7: 2284371, 8: 2284527, 11: 2284555, 24: 2284583, 36: 2284611, 48: 2284639, 59: 2284947, 73: 22
[2025-11-26 20:31:11] 2025-11-27 01:30:29,044 | INFO     | --------------------------------------------------
[2025-11-26 20:31:11] 2025-11-27 01:30:29,044 | INFO     | 
[2025-11-26 20:31:11] 2025-11-27 01:30:29,044 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-26 20:31:11] 2025-11-27 01:30:29,109 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 20:31:11] 2025-11-27 01:30:29,109 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 20:31:11] 2025-11-27 01:30:29,109 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 20:31:11] 2025-11-27 01:30:29,109 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 20:31:11] 2025-11-27 01:30:29,109 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 20:31:11] 2025-11-27 01:30:29,110 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 20:31:11] 2025-11-27 01:30:29,110 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 20:31:11] 2025-11-27 01:30:29,110 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 20:31:11] 2025-11-27 01:30:29,110 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 20:31:11] 2025-11-27 01:30:29,110 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 20:31:11] 2025-11-27 01:30:29,110 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 20:31:11] 2025-11-27 01:30:29,110 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 20:31:11] 2025-11-27 01:30:29,110 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 20:31:11] 2025-11-27 01:30:29,110 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 20:31:11] 2025-11-27 01:30:29,110 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 20:31:11] 2025-11-27 01:30:29,110 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 20:31:11] 2025-11-27 01:30:29,111 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 20:31:11] 2025-11-27 01:30:29,111 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 20:31:11] 2025-11-27 01:30:29,111 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 20:31:11] 2025-11-27 01:30:29,111 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 20:31:11] 2025-11-27 01:30:29,111 | INFO     | job 6895350369 has completed (purged errors)
[2025-11-26 20:31:11] 2025-11-27 01:30:29,111 | INFO     | overall cleanup function is called
[2025-11-26 20:31:11] 2025-11-27 01:30:30,142 | INFO     | --- collectZombieJob: --- 10, [1420224]
[2025-11-26 20:31:11] 2025-11-27 01:30:30,143 | INFO     | zombie collector waiting for pid 1420224
[2025-11-26 20:31:11] 2025-11-27 01:30:30,143 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 20:31:11] 2025-11-27 01:30:30,143 | INFO     | collected zombie processes
[2025-11-26 20:31:11] 2025-11-27 01:30:30,143 | INFO     | will attempt to kill all subprocesses of pid=1420224
[2025-11-26 20:31:11] 2025-11-27 01:30:30,889 | INFO     | process IDs to be killed: [1420224] (in reverse order)
[2025-11-26 20:31:11] 2025-11-27 01:30:31,233 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 20:31:11] 2025-11-27 01:30:31,233 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 20:31:11] 2025-11-27 01:30:31,248 | INFO     | did not find any defunct processes belonging to 1420224
[2025-11-26 20:31:11] 2025-11-27 01:30:31,266 | INFO     | did not find any defunct processes belonging to 1420224
[2025-11-26 20:31:11] 2025-11-27 01:30:31,274 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 20:31:11] 2025-11-27 01:30:31,274 | INFO     | ready for new job
[2025-11-26 20:31:11] 2025-11-27 01:30:31,275 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 20:31:11] 2025-11-27 01:30:31,298 | INFO     | ***************************************
[2025-11-26 20:31:11] 2025-11-27 01:30:31,298 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 20:31:11] 2025-11-27 01:30:31,298 | INFO     | ***************************************
[2025-11-26 20:31:11] 2025-11-27 01:30:31,298 | INFO     | 
[2025-11-26 20:31:11] 2025-11-27 01:30:31,300 | INFO     | architecture information:
[2025-11-26 20:31:11] 2025-11-27 01:30:31,305 | INFO     | executing command: cat /etc/os-release
[2025-11-26 20:31:11] 2025-11-27 01:30:31,383 | INFO     | cat /etc/os-release:
[2025-11-26 20:31:11] NAME="CentOS Linux"
[2025-11-26 20:31:11] VERSION="7 (Core)"
[2025-11-26 20:31:11] ID="centos"
[2025-11-26 20:31:11] ID_LIKE="rhel fedora"
[2025-11-26 20:31:11] VERSION_ID="7"
[2025-11-26 20:31:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 20:31:11] ANSI_COLOR="0;31"
[2025-11-26 20:31:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 20:31:11] HOME_URL="https://www.centos.org/"
[2025-11-26 20:31:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 20:31:11] 
[2025-11-26 20:31:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 20:31:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 20:31:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 20:31:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 20:31:11] 
[2025-11-26 20:31:11] 2025-11-27 01:30:31,384 | INFO     | ***************************************
[2025-11-26 20:31:11] 2025-11-27 01:30:31,888 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-26 20:31:11] 2025-11-27 01:30:31,956 | INFO     | sufficient remaining disk space (48523902976 B)
[2025-11-26 20:31:11] 2025-11-27 01:30:31,956 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 20:31:11] 2025-11-27 01:30:31,957 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 20:31:11] 2025-11-27 01:30:31,957 | INFO     | update_server=False
[2025-11-26 20:31:11] 2025-11-27 01:30:31,957 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 20:31:11] 2025-11-27 01:30:32,093 | INFO     | all data control threads have been joined
[2025-11-26 20:31:11] 2025-11-27 01:30:32,238 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 20:31:11] 2025-11-27 01:30:32,331 | INFO     | all job control threads have been joined
[2025-11-26 20:31:11] 2025-11-27 01:30:32,376 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:31:11] 2025-11-27 01:30:32,377 | INFO     | aborting loop
[2025-11-26 20:31:11] 2025-11-27 01:30:32,652 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 20:31:11] 2025-11-27 01:30:32,963 | INFO     | [job] retrieve thread has finished
[2025-11-26 20:31:11] 2025-11-27 01:30:32,963 | INFO     | [payload] failed_post thread has finished
[2025-11-26 20:31:11] 2025-11-27 01:30:33,099 | INFO     | [data] control thread has finished
[2025-11-26 20:31:11] 2025-11-27 01:30:33,139 | INFO     | all payload control threads have been joined
[2025-11-26 20:31:11] 2025-11-27 01:30:33,175 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 20:31:11] 2025-11-27 01:30:33,339 | INFO     | [job] control thread has finished
[2025-11-26 20:31:11] 2025-11-27 01:30:33,382 | INFO     | [job] job monitor thread has finished
[2025-11-26 20:31:11] 2025-11-27 01:30:33,598 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 20:31:11] 2025-11-27 01:30:33,603 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 20:31:11] 2025-11-27 01:30:33,632 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 20:31:11] 2025-11-27 01:30:33,664 | INFO     | [job] validate thread has finished
[2025-11-26 20:31:11] 2025-11-27 01:30:33,816 | INFO     | [payload] validate_post thread has finished
[2025-11-26 20:31:11] 2025-11-27 01:30:33,850 | INFO     | [data] copytool_in thread has finished
[2025-11-26 20:31:11] 2025-11-27 01:30:34,067 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:31:11] 2025-11-27 01:30:34,145 | INFO     | [payload] control thread has finished
[2025-11-26 20:31:11] 2025-11-27 01:30:34,245 | INFO     | [data] copytool_out thread has finished
[2025-11-26 20:31:11] 2025-11-27 01:30:35,074 | INFO     | [job] queue monitor thread has finished
[2025-11-26 20:31:11] 2025-11-27 01:30:36,661 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 20:31:11] 2025-11-27 01:31:01,742 | INFO     | PID=1406050 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 20:31:11] 2025-11-27 01:31:01,743 | INFO     | .. there are 9 such processes running
[2025-11-26 20:31:11] 2025-11-27 01:31:01,743 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 20:31:11] 2025-11-27 01:31:01,743 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 20:31:11] 2025-11-27 01:31:01,743 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 20:31:11] 2025-11-27 01:31:03,835 | INFO     | [monitor] cgroup control has ended
[2025-11-26 20:31:11] 2025-11-27 01:31:04,914 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140530310285120)>', '<ExcThread(monitor, started 140529434089216)>']
[2025-11-26 20:31:11] 2025-11-27 01:31:05,777 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 20:31:11] 2025-11-27 01:31:05,778 | INFO     | [monitor] control thread has ended
[2025-11-26 20:31:11] 2025-11-27 01:31:09,990 | INFO     | all workflow threads have been joined
[2025-11-26 20:31:11] 2025-11-27 01:31:09,991 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 20:31:11] 2025-11-27 01:31:09,991 | INFO     | traces error code: 0
[2025-11-26 20:31:11] 2025-11-27 01:31:09,991 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 20:31:11] 2025-11-27 01:31:10,471 [wrapper] ==== pilot stdout END ====
[2025-11-26 20:31:11] 2025-11-27 01:31:10,474 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 20:31:11] 2025-11-27 01:31:10,476 [wrapper] pilotpid: 1406050
[2025-11-26 20:31:11] 2025-11-27 01:31:10,479 [wrapper] Pilot exit status: 0
[2025-11-26 20:31:11] 2025-11-27 01:31:10,543 [wrapper] pandaids: 6895350369
[2025-11-26 20:31:11] 2025-11-27 01:31:10,927 [wrapper] cleanup supervisor_pilot 1020001 1406051
[2025-11-26 20:31:11] 2025-11-27 01:31:10,949 [wrapper] Test setup, not cleaning
[2025-11-26 20:31:11] 2025-11-27 01:31:10,978 [wrapper] apfmon messages muted
[2025-11-26 20:31:11] 2025-11-27 01:31:11,000 [wrapper] ==== wrapper stdout END ====
[2025-11-26 20:31:11] 2025-11-27 01:31:11,052 [wrapper] ==== wrapper stderr END ====
[2025-11-26 20:31:11]  *** Error codes and diagnostics ***
[2025-11-26 20:31:11]     "exeErrorCode": 0,
[2025-11-26 20:31:11]     "exeErrorDiag": "",
[2025-11-26 20:31:11]     "pilotErrorCode": 0,
[2025-11-26 20:31:11]     "pilotErrorDiag": "",
[2025-11-26 20:31:11]  *** Listing of results directory ***
[2025-11-26 20:31:11] total 1358860
[2025-11-26 20:31:11] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 15:41 pilot3.tar.gz
[2025-11-26 20:31:11] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 16:08 queuedata.json
[2025-11-26 20:31:11] -rwx------. 1 boincer umatlas     36292 Nov 22 16:08 runpilot2-wrapper.sh
[2025-11-26 20:31:11] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 20:31:11] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:02 run_atlas
[2025-11-26 20:31:11] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:02 job.xml
[2025-11-26 20:31:11] -rw-r--r--. 2 boincer umatlas 413033286 Nov 25 00:02 EVNT.47483658._000508.pool.root.1
[2025-11-26 20:31:11] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:02 start_atlas.sh
[2025-11-26 20:31:11] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:02 shared
[2025-11-26 20:31:11] -rw-r--r--. 2 boincer umatlas    590103 Nov 25 00:02 input.tar.gz
[2025-11-26 20:31:11] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:02 boinc_lockfile
[2025-11-26 20:31:11] -rw-r--r--. 1 boincer umatlas      2785 Nov 25 00:02 pandaJob.out
[2025-11-26 20:31:11] -rw-------. 1 boincer umatlas        57 Nov 25 00:02 setup.sh.local
[2025-11-26 20:31:11] -rw-------. 1 boincer umatlas    991801 Nov 25 00:05 agis_schedconf.cvmfs.json
[2025-11-26 20:31:11] drwx------. 5 boincer umatlas      4096 Nov 25 00:05 pilot3
[2025-11-26 20:31:11] -rw-r--r--. 1 boincer umatlas       534 Nov 26 19:00 boinc_task_state.xml
[2025-11-26 20:31:11] -rw-------. 1 boincer umatlas 930588588 Nov 26 20:26 HITS.47556137._005036.pool.root.1
[2025-11-26 20:31:11] -rw-r--r--. 1 boincer umatlas      6661 Nov 26 20:27 init_data.xml
[2025-11-26 20:31:11] -rw-------. 1 boincer umatlas      1073 Nov 26 20:29 memory_monitor_summary.json
[2025-11-26 20:31:11] -rw-------. 1 boincer umatlas   1516240 Nov 26 20:29 agis_ddmendpoints.agis.ALL.json
[2025-11-26 20:31:11] -rw-------. 1 boincer umatlas   3610352 Nov 26 20:29 log.47556137._005036.job.log.tgz.1
[2025-11-26 20:31:11] -rw-------. 1 boincer umatlas        95 Nov 26 20:30 pilot_heartbeat.json
[2025-11-26 20:31:11] -rw-------. 1 boincer umatlas      8662 Nov 26 20:30 heartbeat.json
[2025-11-26 20:31:11] -rw-------. 1 boincer umatlas      4823 Nov 26 20:31 pilotlog.txt
[2025-11-26 20:31:11] -rw-------. 1 boincer umatlas  18354067 Nov 26 20:31 log.47556137._005036.job.log.1
[2025-11-26 20:31:11] -rw-------. 1 boincer umatlas       353 Nov 26 20:31 output.list
[2025-11-26 20:31:11] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 20:31 boinc_mmap_file
[2025-11-26 20:31:11] -rw-r--r--. 1 boincer umatlas        30 Nov 26 20:31 wrapper_checkpoint.txt
[2025-11-26 20:31:11] -rw-r--r--. 1 boincer umatlas       620 Nov 26 20:31 runtime_log
[2025-11-26 20:31:11] -rw-------. 1 boincer umatlas  21985280 Nov 26 20:31 result.tar.gz
[2025-11-26 20:31:11] -rw-r--r--. 1 boincer umatlas      9346 Nov 26 20:31 runtime_log.err
[2025-11-26 20:31:11] -rw-------. 1 boincer umatlas       668 Nov 26 20:31 ojoKDmx19g8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmnPKKDmR3JXTn.diag
[2025-11-26 20:31:11] -rw-r--r--. 1 boincer umatlas     21906 Nov 26 20:31 stderr.txt
[2025-11-26 20:31:11] HITS file was successfully produced:
[2025-11-26 20:31:11] -rw-------. 1 boincer umatlas 930588588 Nov 26 20:26 shared/HITS.pool.root.1
[2025-11-26 20:31:11]  *** Contents of shared directory: ***
[2025-11-26 20:31:11] total 1334208
[2025-11-26 20:31:11] -rw-r--r--. 2 boincer umatlas 413033286 Nov 25 00:02 ATLAS.root_0
[2025-11-26 20:31:11] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:02 start_atlas.sh
[2025-11-26 20:31:11] -rw-r--r--. 2 boincer umatlas    590103 Nov 25 00:02 input.tar.gz
[2025-11-26 20:31:11] -rw-------. 1 boincer umatlas 930588588 Nov 26 20:26 HITS.pool.root.1
[2025-11-26 20:31:11] -rw-------. 1 boincer umatlas  21985280 Nov 26 20:31 result.tar.gz
20:31:13 (1400312): run_atlas exited; CPU time 310184.669657
20:31:13 (1400312): called boinc_finish(0)

</stderr_txt>
]]>

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