Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
15:46:48 (4052482): wrapper (7.7.26015): starting
15:46:48 (4052482): wrapper: running run_atlas (--nthreads 10)
[2025-11-23 15:46:48] Arguments: --nthreads 10
[2025-11-23 15:46:48] Threads: 10
[2025-11-23 15:46:48] Checking for CVMFS
[2025-11-23 15:46:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 15:46:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 15:46:49] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 15:46:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 15:46:50] 2.13.3.0 7351 7691 50992 153226 1 56 2668546 4096000 9506 130560 0 23763457 99.976 570270 735 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-23 15:46:50] CVMFS is ok
[2025-11-23 15:46:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 15:46:50] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-23 15:46:50] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-23 15:46:50] Further information can be found at the LHC@home message board.
[2025-11-23 15:46:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 15:46:50] Checking for apptainer binary...
[2025-11-23 15:46:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 15:46:50] Running /usr/bin/apptainer --version
[2025-11-23 15:46:50] apptainer version 1.4.2
[2025-11-23 15:46:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 15:46:51] 3950x-linux
[2025-11-23 15:46:51] apptainer works
[2025-11-23 15:46:51] Set ATHENA_PROC_NUMBER=10
[2025-11-23 15:46:51] Set ATHENA_CORE_NUMBER=10
[2025-11-23 15:46:51] Starting ATLAS job with PandaID=6895350492
[2025-11-23 15:46:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/multiboinc/boinc224/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 12:33:34]  *** The last 200 lines of the pilot log: ***
[2025-11-24 12:33:34] 2025-11-24 20:32:30,166 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 12:33:34] 2025-11-24 20:32:31,586 | INFO     | time since job start (74708s) is within the limit (172800.0s)
[2025-11-24 12:33:34] 2025-11-24 20:32:32,668 | INFO     | monitor loop #4887: job 0:6895350492 is in state 'finished'
[2025-11-24 12:33:34] 2025-11-24 20:32:32,668 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 12:33:34] 2025-11-24 20:32:33,594 | INFO     | time since job start (74710s) is within the limit (172800.0s)
[2025-11-24 12:33:34] 2025-11-24 20:32:35,171 | INFO     | monitor loop #4888: job 0:6895350492 is in state 'finished'
[2025-11-24 12:33:34] 2025-11-24 20:32:35,171 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 12:33:34] 2025-11-24 20:32:35,604 | INFO     | time since job start (74712s) is within the limit (172800.0s)
[2025-11-24 12:33:34] 2025-11-24 20:32:37,608 | INFO     | time since job start (74714s) is within the limit (172800.0s)
[2025-11-24 12:33:34] 2025-11-24 20:32:37,674 | INFO     | monitor loop #4889: job 0:6895350492 is in state 'finished'
[2025-11-24 12:33:34] 2025-11-24 20:32:37,674 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 12:33:34] 2025-11-24 20:32:39,615 | INFO     | time since job start (74716s) is within the limit (172800.0s)
[2025-11-24 12:33:34] 2025-11-24 20:32:40,177 | INFO     | monitor loop #4890: job 0:6895350492 is in state 'finished'
[2025-11-24 12:33:34] 2025-11-24 20:32:40,178 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 12:33:34] 2025-11-24 20:32:41,623 | INFO     | time since job start (74718s) is within the limit (172800.0s)
[2025-11-24 12:33:34] 2025-11-24 20:32:42,680 | INFO     | monitor loop #4891: job 0:6895350492 is in state 'finished'
[2025-11-24 12:33:34] 2025-11-24 20:32:42,680 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 12:33:34] 2025-11-24 20:32:42,932 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 12:33:34] 2025-11-24 20:32:42,943 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3249.7841875000004
[2025-11-24 12:33:34] 2025-11-24 20:32:42,955 | INFO     | using path: /var/lib/multiboinc/boinc224/slots/3/PanDA_Pilot-6895350492/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 12:33:34] 2025-11-24 20:32:42,956 | INFO     | extracted standard info from prmon json
[2025-11-24 12:33:34] 2025-11-24 20:32:42,956 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 12:33:34] 2025-11-24 20:32:42,956 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 12:33:34] 2025-11-24 20:32:42,998 | INFO     | fitting pss+swap vs Time
[2025-11-24 12:33:34] 2025-11-24 20:32:43,000 | INFO     | sum of square deviations: 568619293704.4673
[2025-11-24 12:33:34] 2025-11-24 20:32:43,064 | INFO     | sum of deviations: 2751998206949.5474
[2025-11-24 12:33:34] 2025-11-24 20:32:43,064 | INFO     | mean x: 1763979019.245098
[2025-11-24 12:33:34] 2025-11-24 20:32:43,064 | INFO     | mean y: 3138350.0081699346
[2025-11-24 12:33:34] 2025-11-24 20:32:43,064 | INFO     | intersect: -8534150398.027487
[2025-11-24 12:33:34] 2025-11-24 20:32:43,068 | INFO     | chi2: 13.4760085858848
[2025-11-24 12:33:34] 2025-11-24 20:32:43,070 | INFO     | sum of square deviations: 561680355786.6392
[2025-11-24 12:33:34] 2025-11-24 20:32:43,134 | INFO     | sum of deviations: 3205600267977.4463
[2025-11-24 12:33:34] 2025-11-24 20:32:43,134 | INFO     | mean x: 1763978866.7563577
[2025-11-24 12:33:34] 2025-11-24 20:32:43,134 | INFO     | mean y: 3148316.4257588186
[2025-11-24 12:33:34] 2025-11-24 20:32:43,135 | INFO     | intersect: -10064163224.24828
[2025-11-24 12:33:34] 2025-11-24 20:32:43,140 | INFO     | chi2: 10.203846547623451
[2025-11-24 12:33:34] 2025-11-24 20:32:43,141 | INFO     | current chi2=10.203846547623451 (change=24.281388791104778 %)
[2025-11-24 12:33:34] 2025-11-24 20:32:43,141 | INFO     | right removable region: 1218
[2025-11-24 12:33:34] 2025-11-24 20:32:43,142 | INFO     | sum of square deviations: 561678306186.6384
[2025-11-24 12:33:34] 2025-11-24 20:32:43,220 | INFO     | sum of deviations: 2271586038730.1294
[2025-11-24 12:33:34] 2025-11-24 20:32:43,220 | INFO     | mean x: 1763979171.7563577
[2025-11-24 12:33:34] 2025-11-24 20:32:43,221 | INFO     | mean y: 3148903.2091878587
[2025-11-24 12:33:34] 2025-11-24 20:32:43,221 | INFO     | intersect: -7130882116.03583
[2025-11-24 12:33:34] 2025-11-24 20:32:43,222 | INFO     | chi2: 10.175733741668356
[2025-11-24 12:33:34] 2025-11-24 20:32:43,222 | INFO     | current chi2=10.175733741668356 (change=24.490002534379926 %)
[2025-11-24 12:33:34] 2025-11-24 20:32:43,222 | INFO     | left removable region: 10
[2025-11-24 12:33:34] 2025-11-24 20:32:43,226 | INFO     | sum of square deviations: 546609992779.42615
[2025-11-24 12:33:34] 2025-11-24 20:32:43,289 | INFO     | sum of deviations: 2507361354376.1416
[2025-11-24 12:33:34] 2025-11-24 20:32:43,289 | INFO     | mean x: 1763979141.2798014
[2025-11-24 12:33:34] 2025-11-24 20:32:43,289 | INFO     | mean y: 3167598.259933775
[2025-11-24 12:33:34] 2025-11-24 20:32:43,289 | INFO     | intersect: -8088402602.059063
[2025-11-24 12:33:34] 2025-11-24 20:32:43,290 | INFO     | chi2: 4.999400529410585
[2025-11-24 12:33:34] 2025-11-24 20:32:43,290 | INFO     | current memory leak: 4.59 B/s (using 1208 data points, chi2=5.00)
[2025-11-24 12:33:34] 2025-11-24 20:32:43,291 | INFO     | could have reported an average CPU frequency of 3249 MHz (44 samples)
[2025-11-24 12:33:34] 2025-11-24 20:32:43,291 | INFO     | ..............................
[2025-11-24 12:33:34] 2025-11-24 20:32:43,291 | INFO     | . Timing measurements:
[2025-11-24 12:33:34] 2025-11-24 20:32:43,292 | INFO     | . get job = 0 s
[2025-11-24 12:33:34] 2025-11-24 20:32:43,292 | INFO     | . initial setup = 4 s
[2025-11-24 12:33:34] 2025-11-24 20:32:43,292 | INFO     | . payload setup = 19 s
[2025-11-24 12:33:34] 2025-11-24 20:32:43,292 | INFO     | . stage-in = 0 s
[2025-11-24 12:33:34] 2025-11-24 20:32:43,292 | INFO     | . payload execution = 74630 s
[2025-11-24 12:33:34] 2025-11-24 20:32:43,292 | INFO     | . stage-out = 8 s
[2025-11-24 12:33:34] 2025-11-24 20:32:43,292 | INFO     | . log creation = 2 s
[2025-11-24 12:33:34] 2025-11-24 20:32:43,292 | INFO     | ..............................
[2025-11-24 12:33:34] 2025-11-24 20:32:43,521 | INFO     | 
[2025-11-24 12:33:34] 2025-11-24 20:32:43,521 | INFO     | job summary report
[2025-11-24 12:33:34] 2025-11-24 20:32:43,522 | INFO     | --------------------------------------------------
[2025-11-24 12:33:34] 2025-11-24 20:32:43,522 | INFO     | PanDA job id: 6895350492
[2025-11-24 12:33:34] 2025-11-24 20:32:43,522 | INFO     | task id: 47556137
[2025-11-24 12:33:34] 2025-11-24 20:32:43,522 | INFO     | errors: (none)
[2025-11-24 12:33:34] 2025-11-24 20:32:43,522 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 12:33:34] 2025-11-24 20:32:43,522 | INFO     | pilot state: finished 
[2025-11-24 12:33:34] 2025-11-24 20:32:43,522 | INFO     | transexitcode: 0
[2025-11-24 12:33:34] 2025-11-24 20:32:43,522 | INFO     | exeerrorcode: 0
[2025-11-24 12:33:34] 2025-11-24 20:32:43,522 | INFO     | exeerrordiag: 
[2025-11-24 12:33:34] 2025-11-24 20:32:43,522 | INFO     | exitcode: 0
[2025-11-24 12:33:34] 2025-11-24 20:32:43,522 | INFO     | exitmsg: OK
[2025-11-24 12:33:34] 2025-11-24 20:32:43,522 | INFO     | cpuconsumptiontime: 218157 s
[2025-11-24 12:33:34] 2025-11-24 20:32:43,522 | INFO     | nevents: 1000
[2025-11-24 12:33:34] 2025-11-24 20:32:43,522 | INFO     | neventsw: 0
[2025-11-24 12:33:34] 2025-11-24 20:32:43,523 | INFO     | pid: 4063129
[2025-11-24 12:33:34] 2025-11-24 20:32:43,523 | INFO     | pgrp: 4063129
[2025-11-24 12:33:34] 2025-11-24 20:32:43,523 | INFO     | corecount: 10
[2025-11-24 12:33:34] 2025-11-24 20:32:43,523 | INFO     | event service: False
[2025-11-24 12:33:34] 2025-11-24 20:32:43,523 | INFO     | sizes: {0: 2298598, 1: 2298797, 12: 2298797, 15: 2299087, 23: 2299115, 74653: 2361601, 74663: 2371414, 74667: 2371470, 74681: 2371716}
[2025-11-24 12:33:34] 2025-11-24 20:32:43,523 | INFO     | --------------------------------------------------
[2025-11-24 12:33:34] 2025-11-24 20:32:43,523 | INFO     | 
[2025-11-24 12:33:34] 2025-11-24 20:32:43,523 | INFO     | executing command: ls -lF /var/lib/multiboinc/boinc224/slots/3
[2025-11-24 12:33:34] 2025-11-24 20:32:43,574 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 12:33:34] 2025-11-24 20:32:43,574 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 12:33:34] 2025-11-24 20:32:43,574 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 12:33:34] 2025-11-24 20:32:43,574 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 12:33:34] 2025-11-24 20:32:43,574 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 12:33:34] 2025-11-24 20:32:43,574 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 12:33:34] 2025-11-24 20:32:43,574 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 12:33:34] 2025-11-24 20:32:43,574 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 12:33:34] 2025-11-24 20:32:43,575 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 12:33:34] 2025-11-24 20:32:43,575 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 12:33:34] 2025-11-24 20:32:43,575 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 12:33:34] 2025-11-24 20:32:43,575 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 12:33:34] 2025-11-24 20:32:43,575 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 12:33:34] 2025-11-24 20:32:43,575 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 12:33:34] 2025-11-24 20:32:43,575 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 12:33:34] 2025-11-24 20:32:43,575 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 12:33:34] 2025-11-24 20:32:43,578 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 12:33:34] 2025-11-24 20:32:43,578 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 12:33:34] 2025-11-24 20:32:43,578 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 12:33:34] 2025-11-24 20:32:43,579 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 12:33:34] 2025-11-24 20:32:43,579 | INFO     | job 6895350492 has completed (purged errors)
[2025-11-24 12:33:34] 2025-11-24 20:32:43,579 | INFO     | overall cleanup function is called
[2025-11-24 12:33:34] 2025-11-24 20:32:44,632 | INFO     | --- collectZombieJob: --- 10, [4063129]
[2025-11-24 12:33:34] 2025-11-24 20:32:44,632 | INFO     | zombie collector waiting for pid 4063129
[2025-11-24 12:33:34] 2025-11-24 20:32:44,633 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 12:33:34] 2025-11-24 20:32:44,633 | INFO     | collected zombie processes
[2025-11-24 12:33:34] 2025-11-24 20:32:44,633 | INFO     | will attempt to kill all subprocesses of pid=4063129
[2025-11-24 12:33:34] 2025-11-24 20:32:45,604 | INFO     | process IDs to be killed: [4063129] (in reverse order)
[2025-11-24 12:33:34] 2025-11-24 20:32:45,864 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 12:33:34] 2025-11-24 20:32:45,865 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 12:33:34] 2025-11-24 20:32:45,880 | INFO     | did not find any defunct processes belonging to 4063129
[2025-11-24 12:33:34] 2025-11-24 20:32:45,896 | INFO     | did not find any defunct processes belonging to 4063129
[2025-11-24 12:33:34] 2025-11-24 20:32:45,899 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 12:33:34] 2025-11-24 20:32:45,900 | INFO     | ready for new job
[2025-11-24 12:33:34] 2025-11-24 20:32:45,900 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 12:33:34] 2025-11-24 20:32:45,918 | INFO     | ***************************************
[2025-11-24 12:33:34] 2025-11-24 20:32:45,919 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 12:33:34] 2025-11-24 20:32:45,919 | INFO     | ***************************************
[2025-11-24 12:33:34] 2025-11-24 20:32:45,919 | INFO     | 
[2025-11-24 12:33:34] 2025-11-24 20:32:45,921 | INFO     | architecture information:
[2025-11-24 12:33:34] 2025-11-24 20:32:45,927 | INFO     | executing command: cat /etc/os-release
[2025-11-24 12:33:34] 2025-11-24 20:32:45,974 | INFO     | cat /etc/os-release:
[2025-11-24 12:33:34] NAME="CentOS Linux"
[2025-11-24 12:33:34] VERSION="7 (Core)"
[2025-11-24 12:33:34] ID="centos"
[2025-11-24 12:33:34] ID_LIKE="rhel fedora"
[2025-11-24 12:33:34] VERSION_ID="7"
[2025-11-24 12:33:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 12:33:34] ANSI_COLOR="0;31"
[2025-11-24 12:33:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 12:33:34] HOME_URL="https://www.centos.org/"
[2025-11-24 12:33:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 12:33:34] 
[2025-11-24 12:33:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 12:33:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 12:33:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 12:33:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 12:33:34] 
[2025-11-24 12:33:34] 2025-11-24 20:32:45,974 | INFO     | ***************************************
[2025-11-24 12:33:34] 2025-11-24 20:32:46,476 | INFO     | executing command: df -mP /var/lib/multiboinc/boinc224/slots/3
[2025-11-24 12:33:34] 2025-11-24 20:32:46,521 | INFO     | sufficient remaining disk space (65400733696 B)
[2025-11-24 12:33:34] 2025-11-24 20:32:46,521 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 12:33:34] 2025-11-24 20:32:46,521 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 12:33:34] 2025-11-24 20:32:46,521 | INFO     | update_server=False
[2025-11-24 12:33:34] 2025-11-24 20:32:46,521 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 12:33:34] 2025-11-24 20:32:46,522 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 12:33:34] 2025-11-24 20:32:46,522 | INFO     | aborting loop
[2025-11-24 12:33:34] 2025-11-24 20:32:46,522 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 12:33:34] 2025-11-24 20:32:46,526 | INFO     | all data control threads have been joined
[2025-11-24 12:33:34] 2025-11-24 20:32:46,827 | INFO     | all job control threads have been joined
[2025-11-24 12:33:34] 2025-11-24 20:32:47,090 | INFO     | all payload control threads have been joined
[2025-11-24 12:33:34] 2025-11-24 20:32:47,526 | INFO     | [job] job monitor thread has finished
[2025-11-24 12:33:34] 2025-11-24 20:32:47,530 | INFO     | [job] retrieve thread has finished
[2025-11-24 12:33:34] 2025-11-24 20:32:47,531 | INFO     | [data] control thread has finished
[2025-11-24 12:33:34] 2025-11-24 20:32:47,700 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 12:33:34] 2025-11-24 20:32:47,832 | INFO     | [job] control thread has finished
[2025-11-24 12:33:34] 2025-11-24 20:32:48,095 | INFO     | [payload] control thread has finished
[2025-11-24 12:33:34] 2025-11-24 20:32:48,096 | INFO     | [job] validate thread has finished
[2025-11-24 12:33:34] 2025-11-24 20:32:48,222 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 12:33:34] 2025-11-24 20:32:48,298 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 12:33:34] 2025-11-24 20:32:48,371 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 12:33:34] 2025-11-24 20:32:48,501 | INFO     | [payload] validate_post thread has finished
[2025-11-24 12:33:34] 2025-11-24 20:32:48,526 | INFO     | [data] copytool_in thread has finished
[2025-11-24 12:33:34] 2025-11-24 20:32:48,527 | INFO     | [data] copytool_out thread has finished
[2025-11-24 12:33:34] 2025-11-24 20:32:48,548 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 12:33:34] 2025-11-24 20:32:48,593 | INFO     | [payload] failed_post thread has finished
[2025-11-24 12:33:34] 2025-11-24 20:32:48,678 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 12:33:34] 2025-11-24 20:32:49,553 | INFO     | [job] queue monitor thread has finished
[2025-11-24 12:33:34] 2025-11-24 20:32:52,379 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 12:33:34] 2025-11-24 20:33:15,269 | INFO     | PID=4056374 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 12:33:34] 2025-11-24 20:33:15,269 | INFO     | .. there are 12 such processes running
[2025-11-24 12:33:34] 2025-11-24 20:33:15,269 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 12:33:34] 2025-11-24 20:33:15,269 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 12:33:34] 2025-11-24 20:33:15,269 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 12:33:34] 2025-11-24 20:33:28,450 | INFO     | [monitor] cgroup control has ended
[2025-11-24 12:33:34] 2025-11-24 20:33:28,958 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139389297170240)>', '<ExcThread(monitor, started 139388667295488)>']
[2025-11-24 12:33:34] 2025-11-24 20:33:29,349 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 12:33:34] 2025-11-24 20:33:29,349 | INFO     | [monitor] control thread has ended
[2025-11-24 12:33:34] 2025-11-24 20:33:33,983 | INFO     | all workflow threads have been joined
[2025-11-24 12:33:34] 2025-11-24 20:33:33,983 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 12:33:34] 2025-11-24 20:33:33,984 | INFO     | traces error code: 0
[2025-11-24 12:33:34] 2025-11-24 20:33:33,984 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 12:33:34] 2025-11-24 20:33:34,329 [wrapper] ==== pilot stdout END ====
[2025-11-24 12:33:34] 2025-11-24 20:33:34,333 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 12:33:34] 2025-11-24 20:33:34,342 [wrapper] pilotpid: 4056374
[2025-11-24 12:33:34] 2025-11-24 20:33:34,347 [wrapper] Pilot exit status: 0
[2025-11-24 12:33:34] 2025-11-24 20:33:34,392 [wrapper] pandaids: 6895350492
[2025-11-24 12:33:34] 2025-11-24 20:33:34,513 [wrapper] cleanup supervisor_pilot 1194602 4056375
[2025-11-24 12:33:34] 2025-11-24 20:33:34,526 [wrapper] Test setup, not cleaning
[2025-11-24 12:33:34] 2025-11-24 20:33:34,552 [wrapper] apfmon messages muted
[2025-11-24 12:33:34] 2025-11-24 20:33:34,563 [wrapper] ==== wrapper stdout END ====
[2025-11-24 12:33:34] 2025-11-24 20:33:34,582 [wrapper] ==== wrapper stderr END ====
[2025-11-24 12:33:34]  *** Error codes and diagnostics ***
[2025-11-24 12:33:34]     "exeErrorCode": 0,
[2025-11-24 12:33:34]     "exeErrorDiag": "",
[2025-11-24 12:33:34]     "pilotErrorCode": 0,
[2025-11-24 12:33:34]     "pilotErrorDiag": "",
[2025-11-24 12:33:34]  *** Listing of results directory ***
[2025-11-24 12:33:34] total 1318908
[2025-11-24 12:33:34] -rw-r--r-- 1 root root    576529 Nov 22 13:27 pilot3.tar.gz
[2025-11-24 12:33:34] -rwx------ 1 4871 1028     36292 Nov 22 13:30 runpilot2-wrapper.sh
[2025-11-24 12:33:34] -rw-r--r-- 1 root root      5112 Nov 22 13:30 queuedata.json
[2025-11-24 12:33:34] -rw-r--r-- 1 root root       100 Nov 23 15:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 12:33:34] -rwxr-xr-x 1 root root      7986 Nov 23 15:46 run_atlas
[2025-11-24 12:33:34] -rw-r--r-- 1 root root       105 Nov 23 15:46 job.xml
[2025-11-24 12:33:34] -rw-r--r-- 2 root root 409701484 Nov 23 15:46 EVNT.47483658._000514.pool.root.1
[2025-11-24 12:33:34] drwxrwx--x 2 root root      4096 Nov 23 15:46 shared
[2025-11-24 12:33:34] -rw-r--r-- 2 root root    590104 Nov 23 15:46 input.tar.gz
[2025-11-24 12:33:34] -rw-r--r-- 2 root root     15847 Nov 23 15:46 start_atlas.sh
[2025-11-24 12:33:34] -rw-r--r-- 1 root root         0 Nov 23 15:46 boinc_setup_complete
[2025-11-24 12:33:34] -rw-r--r-- 1 root root      9235 Nov 23 15:46 init_data.xml
[2025-11-24 12:33:34] -rw-r--r-- 1 root root         0 Nov 23 15:46 boinc_lockfile
[2025-11-24 12:33:34] -rw-r--r-- 1 root root      2784 Nov 23 15:46 pandaJob.out
[2025-11-24 12:33:34] -rw------- 1 root root    989786 Nov 23 15:47 agis_schedconf.cvmfs.json
[2025-11-24 12:33:34] drwxr-xr-x 5  320  320      4096 Nov 23 15:47 pilot3
[2025-11-24 12:33:34] -rw-r--r-- 1 root root       533 Nov 24 12:11 boinc_task_state.xml
[2025-11-24 12:33:34] -rw------- 1 root root 911394922 Nov 24 12:31 HITS.47556137._005098.pool.root.1
[2025-11-24 12:33:34] -rw------- 1 root root      1044 Nov 24 12:32 memory_monitor_summary.json
[2025-11-24 12:33:34] -rw------- 1 root root   1516227 Nov 24 12:32 agis_ddmendpoints.agis.ALL.json
[2025-11-24 12:33:34] -rw------- 1 root root        95 Nov 24 12:32 pilot_heartbeat.json
[2025-11-24 12:33:34] -rw------- 1 root root   2560208 Nov 24 12:32 log.47556137._005098.job.log.tgz.1
[2025-11-24 12:33:34] -rw------- 1 root root      8595 Nov 24 12:32 heartbeat.json
[2025-11-24 12:33:34] -rw-r--r-- 1 root root      8192 Nov 24 12:33 boinc_mmap_file
[2025-11-24 12:33:34] -rw-r--r-- 1 root root        29 Nov 24 12:33 wrapper_checkpoint.txt
[2025-11-24 12:33:34] -rw------- 1 root root      4838 Nov 24 12:33 pilotlog.txt
[2025-11-24 12:33:34] -rw------- 1 root root  10214027 Nov 24 12:33 log.47556137._005098.job.log.1
[2025-11-24 12:33:34] -rw------- 1 root root       353 Nov 24 12:33 output.list
[2025-11-24 12:33:34] -rw-r--r-- 1 root root       620 Nov 24 12:33 runtime_log
[2025-11-24 12:33:34] -rw------- 1 root root  12789760 Nov 24 12:33 result.tar.gz
[2025-11-24 12:33:34] -rw-r--r-- 1 root root      9021 Nov 24 12:33 runtime_log.err
[2025-11-24 12:33:34] -rw------- 1 root root       658 Nov 24 12:33 k33NDmMMAh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm3IIKDmtGd4Eo.diag
[2025-11-24 12:33:34] -rw-r--r-- 1 root root     21916 Nov 24 12:33 stderr.txt
[2025-11-24 12:33:35] HITS file was successfully produced:
[2025-11-24 12:33:35] -rw------- 1 root root 911394922 Nov 24 12:31 shared/HITS.pool.root.1
[2025-11-24 12:33:35]  *** Contents of shared directory: ***
[2025-11-24 12:33:35] total 1303232
[2025-11-24 12:33:35] -rw-r--r-- 2 root root 409701484 Nov 23 15:46 ATLAS.root_0
[2025-11-24 12:33:35] -rw-r--r-- 2 root root    590104 Nov 23 15:46 input.tar.gz
[2025-11-24 12:33:35] -rw-r--r-- 2 root root     15847 Nov 23 15:46 start_atlas.sh
[2025-11-24 12:33:35] -rw------- 1 root root 911394922 Nov 24 12:31 HITS.pool.root.1
[2025-11-24 12:33:35] -rw------- 1 root root  12789760 Nov 24 12:33 result.tar.gz
12:33:36 (4052482): run_atlas exited; CPU time 218715.443852
12:33:36 (4052482): called boinc_finish(0)

</stderr_txt>
]]>

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